Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1097

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
16,220	-				-0.5
16,221	-				-0.1
16,331	+				+0.2
16,377	-				+2.4
16,377	-				-0.7
16,436	-				+0.1
16,457	+				+0.6
16,457	+				-0.7
16,465	+				+0.9
16,466	-				-0.2
16,466	-				+0.3
16,474	+				+0.2
16,597	+				+0.6
16,597	+				-0.0
16,597	+				-0.2
16,598	-				-0.2
16,632	+				+0.0
16,672	+				-0.3
16,743	+				+1.5
16,785	-				-1.9
16,836	+				+0.3
17,009	+				+0.8
17,010	-				-0.3
17,010	-				+0.6
17,010	-				-0.3
17,016	+				-0.1
17,017	-				-0.1
17,020	+				+1.5
17,020	+				+0.8
17,021	-				+0.7
17,082	-				+0.4
17,166	+				+1.3
17,166	+				-0.0
17,167	-				-0.1
17,167	-				-0.3
17,167	-				+0.9
17,167	-				-0.2
17,197	-				+0.7
17,324	+				+0.4
17,325	-				+0.1
17,325	-				+0.7
17,360	+				+0.4
17,360	+				+0.5
17,360	+				+0.2
17,360	+				-0.9
17,361	-				-0.1
17,361	-				-0.3
17,361	-				-0.4
17,363	-				+0.2
17,369	+				-0.9
17,399	+		GFF1097	0.11	-0.2
17,400	-		GFF1097	0.11	+0.5
17,400	-		GFF1097	0.11	-0.1
17,427	+		GFF1097	0.13	+1.2
17,427	+		GFF1097	0.13	+0.9
17,428	-		GFF1097	0.13	+0.1
17,507	-		GFF1097	0.16	-0.1
17,527	-		GFF1097	0.17	-1.5
17,586	+		GFF1097	0.20	+0.1
17,587	-		GFF1097	0.20	-0.2
17,619	-		GFF1097	0.22	-0.3
17,630	+		GFF1097	0.22	-1.3
17,631	-		GFF1097	0.22	+2.0
17,717	+		GFF1097	0.27	+0.7
17,718	-		GFF1097	0.27	+0.8
17,718	-		GFF1097	0.27	-0.3
17,743	-		GFF1097	0.28	-0.2
17,752	+		GFF1097	0.28	-0.2
17,753	-		GFF1097	0.28	-0.3
17,788	-		GFF1097	0.30	+0.3
17,837	-		GFF1097	0.32	-0.2
17,838	+		GFF1097	0.32	-0.4
17,839	-		GFF1097	0.33	+0.6
17,839	-		GFF1097	0.33	+2.0
17,839	-		GFF1097	0.33	+0.1
18,024	+		GFF1097	0.41	-0.1
18,025	-		GFF1097	0.41	-0.1
18,059	+		GFF1097	0.43	-0.5
18,128	+		GFF1097	0.46	+0.5
18,128	+		GFF1097	0.46	-0.3
18,128	+		GFF1097	0.46	+0.3
18,128	+		GFF1097	0.46	+0.6
18,200	+		GFF1097	0.50	+0.6
18,201	-		GFF1097	0.50	+0.3
18,204	+		GFF1097	0.50	-0.2
18,205	-		GFF1097	0.50	+2.1
18,208	+		GFF1097	0.50	+0.5
18,208	+		GFF1097	0.50	-0.6
18,209	-		GFF1097	0.50	+0.5
18,279	-		GFF1097	0.54	+0.5
18,279	-		GFF1097	0.54	+0.1
18,324	+		GFF1097	0.56	-0.5
18,325	-		GFF1097	0.56	+0.2
18,680	+		GFF1097	0.73	-0.4
18,680	+		GFF1097	0.73	+0.1
18,680	+		GFF1097	0.73	-0.1
18,681	-		GFF1097	0.73	-0.2
18,852	+		GFF1097	0.81	+0.2
18,890	-		GFF1097	0.83	+0.7
18,890	-		GFF1097	0.83	+1.6
18,890	-		GFF1097	0.83	+0.2
18,890	-		GFF1097	0.83	+1.0
18,890	-		GFF1097	0.83	-0.5
18,906	+		GFF1097	0.84	-0.4
18,906	+		GFF1097	0.84	+0.2
18,909	+		GFF1097	0.84	+0.3
18,910	-		GFF1097	0.84	+0.3
19,011	+		GFF1097	0.89	+0.1
19,011	+		GFF1097	0.89	+0.4
19,162	+				+0.3
19,163	-				+0.4
19,185	+				-0.5
19,185	+				+0.3
19,186	-				-0.1
19,249	-				+0.1
19,252	+				-0.1
19,253	-				-0.3
19,253	-				-0.1
19,291	+				+0.1
19,291	+				-0.1
19,345	-				+0.3
19,345	-				-1.8
19,358	-				-0.4
19,407	-				-0.8
19,505	-				-0.5
19,514	+				+0.3
19,514	+				+0.4
19,545	-				+0.9
19,600	-				+0.3
19,654	+				+0.8
19,655	-				+0.4
19,807	+				-0.4
19,808	-				-0.4
19,880	+				+0.8
19,881	-				-0.9
19,951	+				+0.1
19,952	-				+0.2
20,110	-				+1.3
20,206	-				+1.5