Strain Fitness in Escherichia fergusonii Becca around EFB2_01486

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community
1,550,431	-		EFB2_01485	0.37	-0.2
1,550,485	+		EFB2_01485	0.42	+0.6
1,550,485	+		EFB2_01485	0.42	-1.5
1,550,485	+		EFB2_01485	0.42	+0.6
1,550,486	-		EFB2_01485	0.42	-0.8
1,550,494	+		EFB2_01485	0.42	-1.2
1,550,494	+		EFB2_01485	0.42	+0.5
1,550,494	+		EFB2_01485	0.42	+1.1
1,550,494	+		EFB2_01485	0.42	-0.2
1,550,494	+		EFB2_01485	0.42	-0.2
1,550,494	+		EFB2_01485	0.42	-1.2
1,550,494	+		EFB2_01485	0.42	-2.7
1,550,494	+		EFB2_01485	0.42	-1.3
1,550,495	-		EFB2_01485	0.43	+0.1
1,550,495	-		EFB2_01485	0.43	+0.1
1,550,495	-		EFB2_01485	0.43	+0.4
1,550,495	-		EFB2_01485	0.43	-0.0
1,550,495	-		EFB2_01485	0.43	-1.1
1,550,573	+		EFB2_01485	0.49	-0.9
1,550,573	+		EFB2_01485	0.49	-0.9
1,550,574	-		EFB2_01485	0.49	-1.9
1,550,622	+		EFB2_01485	0.53	+0.1
1,550,622	+		EFB2_01485	0.53	-2.5
1,550,622	+		EFB2_01485	0.53	+0.2
1,550,622	+		EFB2_01485	0.53	+1.0
1,550,622	+		EFB2_01485	0.53	+0.3
1,550,622	+		EFB2_01485	0.53	-0.2
1,550,622	+		EFB2_01485	0.53	+1.1
1,550,622	+		EFB2_01485	0.53	+0.0
1,550,623	-		EFB2_01485	0.53	+0.6
1,550,623	-		EFB2_01485	0.53	+1.6
1,550,623	-		EFB2_01485	0.53	+0.1
1,550,685	+		EFB2_01485	0.58	-0.8
1,550,695	+		EFB2_01485	0.58	-0.2
1,550,695	+		EFB2_01485	0.58	-1.1
1,550,695	+		EFB2_01485	0.58	-1.8
1,550,695	+		EFB2_01485	0.58	-0.0
1,550,695	+		EFB2_01485	0.58	-1.2
1,550,695	+		EFB2_01485	0.58	-0.4
1,550,696	-		EFB2_01485	0.59	+0.7
1,550,696	-		EFB2_01485	0.59	-1.9
1,550,696	-		EFB2_01485	0.59	+0.7
1,550,710	+		EFB2_01485	0.60	-1.7
1,550,711	-		EFB2_01485	0.60	-1.0
1,550,751	+		EFB2_01485	0.63	+1.3
1,550,751	+		EFB2_01485	0.63	+0.3
1,550,751	+		EFB2_01485	0.63	-0.2
1,550,751	+		EFB2_01485	0.63	-0.7
1,550,751	+		EFB2_01485	0.63	+0.6
1,550,751	+		EFB2_01485	0.63	-0.3
1,550,752	-		EFB2_01485	0.63	+2.0
1,550,768	-		EFB2_01485	0.64	+1.4
1,550,772	+		EFB2_01485	0.65	-0.3
1,550,772	+		EFB2_01485	0.65	+0.1
1,550,772	+		EFB2_01485	0.65	-0.7
1,550,773	-		EFB2_01485	0.65	+1.5
1,550,896	+		EFB2_01485	0.74	-1.8
1,550,896	+		EFB2_01485	0.74	+0.5
1,550,896	+		EFB2_01485	0.74	-0.8
1,550,896	+		EFB2_01485	0.74	+0.4
1,550,897	-		EFB2_01485	0.75	+0.8
1,550,897	-		EFB2_01485	0.75	-1.7
1,550,897	-		EFB2_01485	0.75	-0.1
1,550,897	-		EFB2_01485	0.75	-0.9
1,550,897	-		EFB2_01485	0.75	-2.2
1,550,897	-		EFB2_01485	0.75	+0.9
1,550,897	-		EFB2_01485	0.75	-1.5
1,550,897	-		EFB2_01485	0.75	-0.0
1,550,897	-		EFB2_01485	0.75	-1.5
1,550,897	-		EFB2_01485	0.75	-1.3
1,550,902	+		EFB2_01485	0.75	+0.7
1,550,902	+		EFB2_01485	0.75	-0.2
1,550,902	+		EFB2_01485	0.75	-0.6
1,550,902	+		EFB2_01485	0.75	+0.3
1,550,902	+		EFB2_01485	0.75	+0.9
1,550,902	+		EFB2_01485	0.75	-0.3
1,550,902	+		EFB2_01485	0.75	-0.3
1,550,903	-		EFB2_01485	0.75	+0.1
1,550,903	-		EFB2_01485	0.75	+0.3
1,550,903	-		EFB2_01485	0.75	+0.1
1,550,903	-		EFB2_01485	0.75	+0.7
1,550,903	-		EFB2_01485	0.75	+3.1
1,550,903	-		EFB2_01485	0.75	-0.1
1,550,907	+		EFB2_01485	0.75	-1.5
1,550,907	+		EFB2_01485	0.75	+0.9
1,550,907	+		EFB2_01485	0.75	+1.8
1,550,908	-		EFB2_01485	0.75	+1.5
1,550,908	-		EFB2_01485	0.75	-1.0
1,550,908	-		EFB2_01485	0.75	-1.9
1,550,997	+		EFB2_01485	0.82	-0.5
1,551,031	+		EFB2_01485	0.85	-1.7
1,551,031	+		EFB2_01485	0.85	-0.8
1,551,031	+		EFB2_01485	0.85	+0.9
1,551,031	+		EFB2_01485	0.85	-0.5
1,551,031	+		EFB2_01485	0.85	+1.1
1,551,031	+		EFB2_01485	0.85	+1.0
1,551,031	+		EFB2_01485	0.85	+1.1
1,551,031	+		EFB2_01485	0.85	+0.5
1,551,032	-		EFB2_01485	0.85	+0.0
1,551,032	-		EFB2_01485	0.85	+0.5
1,551,032	-		EFB2_01485	0.85	+0.8
1,551,032	-		EFB2_01485	0.85	+0.1
1,551,032	-		EFB2_01485	0.85	-0.1
1,551,032	-		EFB2_01485	0.85	-0.4
1,551,032	-		EFB2_01485	0.85	-1.1
1,551,032	-		EFB2_01485	0.85	-1.6
1,551,032	-		EFB2_01485	0.85	-1.5
1,551,064	+		EFB2_01485	0.88	+0.5
1,551,106	+				-2.7
1,551,106	+				+1.2
1,551,107	-				-0.0
1,551,109	+				-1.6
1,551,109	+				-1.5
1,551,109	+				+0.4
1,551,132	+				+0.4
1,551,132	+				+1.8
1,551,132	+				+1.5
1,551,132	+				+0.2
1,551,132	+				+0.7
1,551,132	+				+0.8
1,551,133	-				-1.0
1,551,141	+				+1.2
1,551,141	+				-0.6
1,551,141	+				-0.5
1,551,141	+				+0.2
1,551,141	+				+0.4
1,551,141	+				+0.9
1,551,142	-				-1.8
1,551,142	-				-0.9
1,551,142	-				-2.1
1,551,184	+				-0.9
1,551,184	+				+1.5
1,551,184	+				+0.9
1,551,185	-				+0.2
1,551,185	-				+0.2
1,551,185	-				+0.7
1,551,185	-				+0.5
1,551,221	+				-0.9
1,551,221	+				+0.8
1,551,221	+				-0.1
1,551,221	+				+0.9
1,551,221	+				-0.1
1,551,222	-				+1.1
1,551,222	-				+0.9
1,551,222	-				-0.6
1,551,222	-				-2.5
1,551,222	-				-0.6
1,551,222	-				+0.5
1,551,242	+				+4.8
1,551,242	+				-0.0
1,551,242	+				+0.3
1,551,242	+				+0.1
1,551,242	+				+1.9
1,551,242	+				-0.3
1,551,242	+				-0.5
1,551,242	+				+0.6
1,551,243	-				+0.5
1,551,243	-				+1.0
1,551,243	-				-0.6
1,551,243	-				+1.0
1,551,243	-				+0.8
1,551,243	-				-0.1
1,551,243	-				+1.0
1,551,243	-				-0.2
1,551,243	-				-0.2
1,551,246	+				+0.9
1,551,246	+				-1.9
1,551,246	+				-0.1
1,551,246	+				+1.5
1,551,246	+				+1.5
1,551,246	+				+0.0
1,551,246	+				+1.0
1,551,246	+				-0.1
1,551,246	+				+0.2
1,551,246	+				+1.5
1,551,246	+				+0.6
1,551,246	+				-0.0
1,551,246	+				+2.0
1,551,246	+				-1.0
1,551,246	+				+0.3
1,551,246	+				+0.7
1,551,246	+				+1.8
1,551,247	-				+0.3
1,551,247	-				+0.6
1,551,247	-				+0.6
1,551,247	-				+1.8
1,551,247	-				+1.2
1,551,247	-				+0.2
1,551,247	-				+1.2
1,551,247	-				-0.1
1,551,247	-				-1.3
1,551,247	-				+0.0
1,551,297	-				+0.2
1,551,297	-				-0.2
1,551,301	+				-0.9
1,551,302	-				+2.4
1,551,302	-				+0.8
1,551,302	-				-2.6
1,551,322	+				+2.1
1,551,322	+				-0.8
1,551,323	-				-0.6
1,551,323	-				+2.4
1,551,326	+				-2.7
1,551,326	+				-1.0
1,551,357	+				+0.4
1,551,357	+				-0.6
1,551,357	+				-0.1
1,551,357	+				+1.0
1,551,357	+				-0.8
1,551,357	+				+0.7
1,551,358	-				+1.4
1,551,358	-				-0.1
1,551,358	-				-0.0
1,551,358	-				+0.2
1,551,369	+				-0.3
1,551,369	+				+0.1
1,551,369	+				-0.1
1,551,369	+				+1.4
1,551,369	+				+0.2
1,551,370	-				+1.2
1,551,370	-				+1.7
1,551,370	-				-1.0
1,551,370	-				-0.8
1,551,373	+				-1.1
1,551,373	+				+0.3
1,551,373	+				-0.9
1,551,373	+				+0.6
1,551,373	+				+1.1
1,551,373	+				+0.9
1,551,373	+				+0.3
1,551,373	+				+1.2
1,551,374	-				+0.6
1,551,374	-				+1.4
1,551,374	-				-2.5
1,551,374	-				+0.6
1,551,374	-				+0.1
1,551,374	-				+0.1
1,551,374	-				+0.7
1,551,374	-				-1.2
1,551,374	-				+0.9
1,551,374	-				+0.8
1,551,374	-				-0.3
1,551,374	-				-0.3
1,551,391	+				+0.5
1,551,391	+				-1.0
1,551,392	-				-2.5
1,551,402	+				-2.2
1,551,402	+				-2.8
1,551,403	-				-0.2
1,551,429	+				+0.2
1,551,429	+				-0.9
1,551,429	+				-0.2
1,551,429	+				-0.0
1,551,429	+				-2.7
1,551,429	+				+1.6
1,551,429	+				+0.5
1,551,429	+				+2.4
1,551,430	-				-0.2
1,551,430	-				+1.1
1,551,430	-				-0.2
1,551,430	-				-0.5
1,551,430	-				-2.1
1,551,430	-				-1.1
1,551,430	-				-0.5
1,551,430	-				-0.7
1,551,430	-				+1.5
1,551,436	+				-0.5
1,551,436	+				+1.1
1,551,436	+				-0.7
1,551,436	+				+2.7
1,551,436	+				+0.8
1,551,437	-				-1.1
1,551,482	+				-2.5
1,551,509	+				-2.4
1,551,510	-				+0.9
1,551,510	-				-2.7
1,551,510	-				-0.3
1,551,510	-				-0.6
1,551,516	+				-0.8
1,551,516	+				+1.3
1,551,516	+				-2.2
1,551,516	+				+1.1
1,551,516	+				-0.4
1,551,516	+				-1.9
1,551,517	-		EFB2_01486	0.10	+0.9
1,551,517	-		EFB2_01486	0.10	+2.2
1,551,561	+		EFB2_01486	0.15	-2.3
1,551,562	-		EFB2_01486	0.15	-0.2
1,551,562	-		EFB2_01486	0.15	-1.1
1,551,562	-		EFB2_01486	0.15	-1.2
1,551,575	+		EFB2_01486	0.16	+1.0
1,551,575	+		EFB2_01486	0.16	-0.2
1,551,575	+		EFB2_01486	0.16	+0.6
1,551,575	+		EFB2_01486	0.16	-0.5
1,551,575	+		EFB2_01486	0.16	+0.4
1,551,575	+		EFB2_01486	0.16	-1.6
1,551,575	+		EFB2_01486	0.16	-0.4
1,551,575	+		EFB2_01486	0.16	+0.3
1,551,575	+		EFB2_01486	0.16	+0.2
1,551,576	-		EFB2_01486	0.16	+0.2
1,551,576	-		EFB2_01486	0.16	-2.0
1,551,576	-		EFB2_01486	0.16	-0.2
1,551,576	-		EFB2_01486	0.16	+0.9
1,551,576	-		EFB2_01486	0.16	+1.7
1,551,576	-		EFB2_01486	0.16	+3.2
1,551,576	-		EFB2_01486	0.16	-1.1
1,551,576	-		EFB2_01486	0.16	+0.4
1,551,576	-		EFB2_01486	0.16	-1.6
1,551,576	-		EFB2_01486	0.16	+0.2
1,551,576	-		EFB2_01486	0.16	+0.4
1,551,576	-		EFB2_01486	0.16	+0.6
1,551,576	-		EFB2_01486	0.16	+0.2
1,551,576	-		EFB2_01486	0.16	-1.4
1,551,599	+		EFB2_01486	0.19	-0.4
1,551,599	+		EFB2_01486	0.19	-1.7
1,551,599	+		EFB2_01486	0.19	-2.0
1,551,599	+		EFB2_01486	0.19	+0.1
1,551,599	+		EFB2_01486	0.19	+0.3
1,551,600	-		EFB2_01486	0.19	-2.1
1,551,600	-		EFB2_01486	0.19	-1.8
1,551,600	-		EFB2_01486	0.19	+1.2
1,551,600	-		EFB2_01486	0.19	+0.7
1,551,620	+		EFB2_01486	0.21	-0.1
1,551,620	+		EFB2_01486	0.21	-0.6
1,551,621	-		EFB2_01486	0.21	-2.6
1,551,621	-		EFB2_01486	0.21	-1.4
1,551,621	-		EFB2_01486	0.21	+0.6
1,551,650	+		EFB2_01486	0.24	+0.8
1,551,650	+		EFB2_01486	0.24	-0.6
1,551,650	+		EFB2_01486	0.24	+0.5
1,551,650	+		EFB2_01486	0.24	-1.6
1,551,650	+		EFB2_01486	0.24	+0.2
1,551,650	+		EFB2_01486	0.24	-2.2
1,551,651	-		EFB2_01486	0.24	-0.9
1,551,651	-		EFB2_01486	0.24	-1.1
1,551,651	-		EFB2_01486	0.24	+0.9
1,551,651	-		EFB2_01486	0.24	-0.5
1,551,651	-		EFB2_01486	0.24	-2.6
1,551,651	-		EFB2_01486	0.24	+0.8
1,551,651	-		EFB2_01486	0.24	-0.1
1,551,651	-		EFB2_01486	0.24	+1.0
1,551,651	-		EFB2_01486	0.24	+0.5
1,551,695	+		EFB2_01486	0.28	-1.0
1,551,710	+		EFB2_01486	0.30	+0.2
1,551,711	-		EFB2_01486	0.30	-1.6
1,551,711	-		EFB2_01486	0.30	-0.2
1,551,722	+		EFB2_01486	0.31	+1.0
1,551,723	-		EFB2_01486	0.31	+1.0
1,551,730	+		EFB2_01486	0.32	+1.0
1,551,730	+		EFB2_01486	0.32	-0.9
1,551,731	-		EFB2_01486	0.32	+1.2
1,551,731	-		EFB2_01486	0.32	+0.4
1,551,793	+		EFB2_01486	0.39	-1.1
1,551,800	+		EFB2_01486	0.39	+1.2
1,551,800	+		EFB2_01486	0.39	+0.4
1,551,800	+		EFB2_01486	0.39	+0.5
1,551,800	+		EFB2_01486	0.39	-0.4
1,551,800	+		EFB2_01486	0.39	+0.0
1,551,800	+		EFB2_01486	0.39	+1.4
1,551,800	+		EFB2_01486	0.39	+0.1
1,551,800	+		EFB2_01486	0.39	+2.2
1,551,800	+		EFB2_01486	0.39	-0.5
1,551,801	-		EFB2_01486	0.39	-0.0
1,551,801	-		EFB2_01486	0.39	-1.4
1,551,801	-		EFB2_01486	0.39	+1.2
1,551,801	-		EFB2_01486	0.39	+0.8
1,551,801	-		EFB2_01486	0.39	+0.0
1,551,801	-		EFB2_01486	0.39	-1.8
1,551,806	+		EFB2_01486	0.40	+0.6
1,551,806	+		EFB2_01486	0.40	-0.9
1,551,806	+		EFB2_01486	0.40	-2.0
1,551,806	+		EFB2_01486	0.40	+1.3
1,551,807	-		EFB2_01486	0.40	-1.1
1,551,807	-		EFB2_01486	0.40	-2.1
1,551,807	-		EFB2_01486	0.40	+0.9
1,551,807	-		EFB2_01486	0.40	+1.6
1,551,816	+		EFB2_01486	0.41	+0.8
1,551,864	-		EFB2_01486	0.46	+1.5
1,551,874	+		EFB2_01486	0.47	+1.2
1,551,875	-		EFB2_01486	0.47	+0.5
1,551,875	-		EFB2_01486	0.47	-1.3
1,551,875	-		EFB2_01486	0.47	-0.8
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