Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltX and uvrB are separated by 87 nucleotides uvrB and COO64_RS05735 are separated by 308 nucleotides
COO64_RS05725: gltX - glutamate--tRNA ligase, at 661,232 to 662,713
gltX
COO64_RS05730: uvrB - excinuclease ABC subunit UvrB, at 662,801 to 664,816
uvrB
COO64_RS05735: COO64_RS05735 - amino acid aminotransferase, at 665,125 to 666,321
_RS05735
Position (kb) 662
663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2 at 662.754 kb on - strand at 662.834 kb on - strand at 662.889 kb on + strand at 662.889 kb on + strand at 662.889 kb on + strand at 662.889 kb on + strand at 662.889 kb on + strand at 662.889 kb on + strand at 662.890 kb on - strand at 662.890 kb on - strand at 662.890 kb on - strand at 662.890 kb on - strand at 663.165 kb on + strand, within uvrB at 663.166 kb on - strand, within uvrB at 663.429 kb on + strand, within uvrB at 663.429 kb on + strand, within uvrB at 663.429 kb on + strand, within uvrB at 663.430 kb on - strand, within uvrB at 663.430 kb on - strand, within uvrB at 663.587 kb on + strand, within uvrB at 663.588 kb on - strand, within uvrB at 663.588 kb on - strand, within uvrB at 663.588 kb on - strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.624 kb on + strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.625 kb on - strand, within uvrB at 663.730 kb on - strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.768 kb on + strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.769 kb on - strand, within uvrB at 663.837 kb on + strand, within uvrB at 663.837 kb on + strand, within uvrB at 663.838 kb on - strand, within uvrB at 663.838 kb on - strand, within uvrB at 663.838 kb on - strand, within uvrB at 663.843 kb on + strand, within uvrB at 663.844 kb on - strand, within uvrB at 663.915 kb on + strand, within uvrB at 664.002 kb on + strand, within uvrB at 664.003 kb on - strand, within uvrB at 664.003 kb on - strand, within uvrB at 664.003 kb on - strand, within uvrB at 664.003 kb on - strand, within uvrB at 664.003 kb on - strand, within uvrB at 664.033 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.074 kb on + strand, within uvrB at 664.075 kb on - strand, within uvrB at 664.075 kb on - strand, within uvrB at 664.075 kb on - strand, within uvrB at 664.278 kb on + strand, within uvrB at 664.278 kb on + strand, within uvrB at 664.278 kb on + strand, within uvrB at 664.279 kb on - strand, within uvrB at 664.279 kb on - strand, within uvrB at 664.359 kb on + strand, within uvrB at 664.359 kb on + strand, within uvrB at 664.360 kb on - strand, within uvrB at 664.360 kb on - strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.383 kb on + strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.384 kb on - strand, within uvrB at 664.465 kb on + strand, within uvrB at 664.466 kb on - strand, within uvrB at 664.495 kb on + strand, within uvrB at 664.518 kb on + strand, within uvrB at 664.518 kb on + strand, within uvrB at 664.518 kb on + strand, within uvrB at 664.519 kb on - strand, within uvrB at 664.519 kb on - strand, within uvrB at 664.519 kb on - strand, within uvrB at 664.519 kb on - strand, within uvrB at 664.533 kb on + strand, within uvrB at 664.533 kb on + strand, within uvrB at 664.533 kb on + strand, within uvrB at 664.533 kb on + strand, within uvrB at 664.534 kb on - strand, within uvrB at 664.534 kb on - strand, within uvrB at 664.536 kb on + strand, within uvrB at 664.536 kb on + strand, within uvrB at 664.537 kb on - strand, within uvrB at 664.542 kb on + strand, within uvrB at 664.542 kb on + strand, within uvrB at 664.542 kb on + strand, within uvrB at 664.543 kb on - strand, within uvrB at 664.543 kb on - strand, within uvrB at 664.543 kb on - strand, within uvrB at 664.543 kb on - strand, within uvrB at 664.545 kb on + strand, within uvrB at 664.545 kb on + strand, within uvrB at 664.546 kb on - strand, within uvrB at 664.546 kb on - strand, within uvrB at 664.546 kb on - strand, within uvrB at 664.557 kb on + strand, within uvrB at 664.558 kb on - strand, within uvrB at 664.558 kb on - strand, within uvrB at 664.599 kb on + strand, within uvrB at 664.600 kb on - strand, within uvrB at 664.868 kb on - strand at 664.868 kb on - strand at 664.868 kb on - strand at 664.871 kb on + strand at 664.871 kb on + strand at 664.872 kb on - strand at 664.872 kb on - strand at 664.873 kb on + strand at 664.874 kb on - strand at 664.874 kb on - strand at 664.880 kb on + strand at 664.880 kb on + strand at 664.880 kb on + strand at 664.880 kb on + strand at 664.880 kb on + strand at 664.880 kb on + strand at 664.880 kb on + strand at 664.881 kb on - strand at 664.885 kb on - strand at 664.885 kb on - strand at 665.032 kb on - strand at 665.037 kb on + strand at 665.037 kb on + strand at 665.037 kb on + strand at 665.037 kb on + strand at 665.037 kb on + strand at 665.038 kb on - strand at 665.038 kb on - strand at 665.038 kb on - strand at 665.038 kb on - strand at 665.038 kb on - strand at 665.038 kb on - strand at 665.039 kb on + strand at 665.039 kb on + strand at 665.039 kb on + strand at 665.039 kb on + strand at 665.039 kb on + strand at 665.039 kb on + strand at 665.039 kb on + strand at 665.040 kb on - strand at 665.040 kb on - strand at 665.066 kb on + strand at 665.066 kb on + strand at 665.066 kb on + strand at 665.066 kb on + strand at 665.120 kb on + strand at 665.120 kb on + strand at 665.120 kb on + strand at 665.120 kb on + strand at 665.120 kb on + strand at 665.120 kb on + strand at 665.120 kb on + strand at 665.121 kb on - strand at 665.121 kb on - strand at 665.123 kb on + strand at 665.123 kb on + strand at 665.123 kb on + strand at 665.124 kb on - strand at 665.124 kb on - strand at 665.124 kb on - strand at 665.236 kb on + strand at 665.237 kb on - strand at 665.237 kb on - strand at 665.257 kb on - strand, within COO64_RS05735 at 665.350 kb on + strand, within COO64_RS05735 at 665.351 kb on - strand, within COO64_RS05735 at 665.351 kb on - strand, within COO64_RS05735 at 665.576 kb on - strand, within COO64_RS05735 at 665.576 kb on - strand, within COO64_RS05735 at 665.578 kb on + strand, within COO64_RS05735 at 665.578 kb on + strand, within COO64_RS05735 at 665.579 kb on - strand, within COO64_RS05735 at 665.579 kb on - strand, within COO64_RS05735 at 665.579 kb on - strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.729 kb on + strand, within COO64_RS05735 at 665.730 kb on - strand, within COO64_RS05735 at 665.730 kb on - strand, within COO64_RS05735 at 665.730 kb on - strand, within COO64_RS05735 at 665.770 kb on + strand, within COO64_RS05735 at 665.770 kb on + strand, within COO64_RS05735 at 665.770 kb on + strand, within COO64_RS05735 at 665.771 kb on - strand, within COO64_RS05735 at 665.771 kb on - strand, within COO64_RS05735 at 665.771 kb on - strand, within COO64_RS05735 at 665.813 kb on + strand, within COO64_RS05735
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X remove 662,754 - +0.3 662,834 - +0.1 662,889 + +0.7 662,889 + -0.5 662,889 + -0.1 662,889 + +0.4 662,889 + +0.3 662,889 + +0.8 662,890 - -0.3 662,890 - -0.7 662,890 - -0.7 662,890 - +0.6 663,165 + uvrB COO64_RS05730 0.18 +0.6 663,166 - uvrB COO64_RS05730 0.18 +1.2 663,429 + uvrB COO64_RS05730 0.31 -0.9 663,429 + uvrB COO64_RS05730 0.31 +0.4 663,429 + uvrB COO64_RS05730 0.31 -2.2 663,430 - uvrB COO64_RS05730 0.31 +0.2 663,430 - uvrB COO64_RS05730 0.31 +0.6 663,587 + uvrB COO64_RS05730 0.39 +0.2 663,588 - uvrB COO64_RS05730 0.39 -0.4 663,588 - uvrB COO64_RS05730 0.39 -0.4 663,588 - uvrB COO64_RS05730 0.39 -0.6 663,624 + uvrB COO64_RS05730 0.41 +0.6 663,624 + uvrB COO64_RS05730 0.41 -1.2 663,624 + uvrB COO64_RS05730 0.41 -0.8 663,624 + uvrB COO64_RS05730 0.41 -0.1 663,624 + uvrB COO64_RS05730 0.41 -0.4 663,624 + uvrB COO64_RS05730 0.41 -0.1 663,624 + uvrB COO64_RS05730 0.41 +0.1 663,624 + uvrB COO64_RS05730 0.41 +1.0 663,624 + uvrB COO64_RS05730 0.41 -1.3 663,625 - uvrB COO64_RS05730 0.41 -1.1 663,625 - uvrB COO64_RS05730 0.41 +0.5 663,625 - uvrB COO64_RS05730 0.41 +1.3 663,625 - uvrB COO64_RS05730 0.41 +0.4 663,625 - uvrB COO64_RS05730 0.41 +0.9 663,625 - uvrB COO64_RS05730 0.41 +0.7 663,625 - uvrB COO64_RS05730 0.41 -0.3 663,625 - uvrB COO64_RS05730 0.41 +0.2 663,730 - uvrB COO64_RS05730 0.46 -0.3 663,768 + uvrB COO64_RS05730 0.48 +0.7 663,768 + uvrB COO64_RS05730 0.48 -1.0 663,768 + uvrB COO64_RS05730 0.48 +0.5 663,768 + uvrB COO64_RS05730 0.48 +0.2 663,768 + uvrB COO64_RS05730 0.48 +0.3 663,768 + uvrB COO64_RS05730 0.48 +0.2 663,768 + uvrB COO64_RS05730 0.48 -0.3 663,768 + uvrB COO64_RS05730 0.48 -0.4 663,769 - uvrB COO64_RS05730 0.48 -0.0 663,769 - uvrB COO64_RS05730 0.48 -0.1 663,769 - uvrB COO64_RS05730 0.48 -1.2 663,769 - uvrB COO64_RS05730 0.48 +1.5 663,769 - uvrB COO64_RS05730 0.48 -1.8 663,769 - uvrB COO64_RS05730 0.48 -0.0 663,769 - uvrB COO64_RS05730 0.48 -1.3 663,837 + uvrB COO64_RS05730 0.51 -1.4 663,837 + uvrB COO64_RS05730 0.51 -1.6 663,838 - uvrB COO64_RS05730 0.51 -0.0 663,838 - uvrB COO64_RS05730 0.51 -0.7 663,838 - uvrB COO64_RS05730 0.51 -1.0 663,843 + uvrB COO64_RS05730 0.52 -0.5 663,844 - uvrB COO64_RS05730 0.52 +0.1 663,915 + uvrB COO64_RS05730 0.55 -0.2 664,002 + uvrB COO64_RS05730 0.60 +0.5 664,003 - uvrB COO64_RS05730 0.60 -0.5 664,003 - uvrB COO64_RS05730 0.60 +0.1 664,003 - uvrB COO64_RS05730 0.60 -1.3 664,003 - uvrB COO64_RS05730 0.60 -1.6 664,003 - uvrB COO64_RS05730 0.60 -0.9 664,033 + uvrB COO64_RS05730 0.61 -0.5 664,074 + uvrB COO64_RS05730 0.63 +0.8 664,074 + uvrB COO64_RS05730 0.63 -0.2 664,074 + uvrB COO64_RS05730 0.63 -0.7 664,074 + uvrB COO64_RS05730 0.63 -1.2 664,074 + uvrB COO64_RS05730 0.63 -0.3 664,074 + uvrB COO64_RS05730 0.63 -1.3 664,074 + uvrB COO64_RS05730 0.63 -0.9 664,075 - uvrB COO64_RS05730 0.63 +0.3 664,075 - uvrB COO64_RS05730 0.63 -1.0 664,075 - uvrB COO64_RS05730 0.63 +2.0 664,278 + uvrB COO64_RS05730 0.73 -0.1 664,278 + uvrB COO64_RS05730 0.73 -0.1 664,278 + uvrB COO64_RS05730 0.73 +0.7 664,279 - uvrB COO64_RS05730 0.73 -0.0 664,279 - uvrB COO64_RS05730 0.73 -0.0 664,359 + uvrB COO64_RS05730 0.77 -1.5 664,359 + uvrB COO64_RS05730 0.77 -0.3 664,360 - uvrB COO64_RS05730 0.77 +0.2 664,360 - uvrB COO64_RS05730 0.77 -0.1 664,383 + uvrB COO64_RS05730 0.78 +0.1 664,383 + uvrB COO64_RS05730 0.78 -0.8 664,383 + uvrB COO64_RS05730 0.78 -0.2 664,383 + uvrB COO64_RS05730 0.78 -0.2 664,383 + uvrB COO64_RS05730 0.78 +0.6 664,383 + uvrB COO64_RS05730 0.78 -0.3 664,383 + uvrB COO64_RS05730 0.78 +0.5 664,383 + uvrB COO64_RS05730 0.78 -0.1 664,383 + uvrB COO64_RS05730 0.78 -0.0 664,383 + uvrB COO64_RS05730 0.78 +0.4 664,383 + uvrB COO64_RS05730 0.78 -0.5 664,383 + uvrB COO64_RS05730 0.78 -1.8 664,384 - uvrB COO64_RS05730 0.79 +1.4 664,384 - uvrB COO64_RS05730 0.79 -0.1 664,384 - uvrB COO64_RS05730 0.79 -0.2 664,384 - uvrB COO64_RS05730 0.79 +1.1 664,384 - uvrB COO64_RS05730 0.79 +0.0 664,384 - uvrB COO64_RS05730 0.79 -0.0 664,384 - uvrB COO64_RS05730 0.79 -0.4 664,465 + uvrB COO64_RS05730 0.83 +0.2 664,466 - uvrB COO64_RS05730 0.83 -0.1 664,495 + uvrB COO64_RS05730 0.84 +0.8 664,518 + uvrB COO64_RS05730 0.85 -0.6 664,518 + uvrB COO64_RS05730 0.85 -0.1 664,518 + uvrB COO64_RS05730 0.85 +0.2 664,519 - uvrB COO64_RS05730 0.85 -0.9 664,519 - uvrB COO64_RS05730 0.85 +0.8 664,519 - uvrB COO64_RS05730 0.85 -1.0 664,519 - uvrB COO64_RS05730 0.85 -0.0 664,533 + uvrB COO64_RS05730 0.86 -0.4 664,533 + uvrB COO64_RS05730 0.86 -0.1 664,533 + uvrB COO64_RS05730 0.86 +0.4 664,533 + uvrB COO64_RS05730 0.86 -1.0 664,534 - uvrB COO64_RS05730 0.86 -0.8 664,534 - uvrB COO64_RS05730 0.86 -0.2 664,536 + uvrB COO64_RS05730 0.86 -0.1 664,536 + uvrB COO64_RS05730 0.86 +0.3 664,537 - uvrB COO64_RS05730 0.86 +1.2 664,542 + uvrB COO64_RS05730 0.86 +0.0 664,542 + uvrB COO64_RS05730 0.86 -1.0 664,542 + uvrB COO64_RS05730 0.86 -0.3 664,543 - uvrB COO64_RS05730 0.86 -1.5 664,543 - uvrB COO64_RS05730 0.86 -0.5 664,543 - uvrB COO64_RS05730 0.86 +0.7 664,543 - uvrB COO64_RS05730 0.86 +0.3 664,545 + uvrB COO64_RS05730 0.87 -0.0 664,545 + uvrB COO64_RS05730 0.87 +1.4 664,546 - uvrB COO64_RS05730 0.87 +0.2 664,546 - uvrB COO64_RS05730 0.87 -1.1 664,546 - uvrB COO64_RS05730 0.87 +0.1 664,557 + uvrB COO64_RS05730 0.87 +0.3 664,558 - uvrB COO64_RS05730 0.87 +0.8 664,558 - uvrB COO64_RS05730 0.87 -1.1 664,599 + uvrB COO64_RS05730 0.89 -0.6 664,600 - uvrB COO64_RS05730 0.89 +2.0 664,868 - -0.7 664,868 - -0.3 664,868 - +0.2 664,871 + -1.1 664,871 + -0.2 664,872 - -0.1 664,872 - -0.0 664,873 + -0.0 664,874 - +0.4 664,874 - +0.3 664,880 + +0.6 664,880 + -0.2 664,880 + +0.3 664,880 + +1.1 664,880 + +0.3 664,880 + -0.0 664,880 + +0.4 664,881 - +0.4 664,885 - -0.2 664,885 - +0.2 665,032 - -1.0 665,037 + -2.0 665,037 + +0.3 665,037 + -0.3 665,037 + -0.6 665,037 + +1.7 665,038 - -0.8 665,038 - -0.1 665,038 - +0.2 665,038 - +1.4 665,038 - +0.1 665,038 - +0.3 665,039 + -2.2 665,039 + -1.3 665,039 + -0.0 665,039 + -0.2 665,039 + -0.2 665,039 + +0.3 665,039 + -0.0 665,040 - +0.2 665,040 - +0.1 665,066 + +0.5 665,066 + -0.1 665,066 + +1.4 665,066 + -0.1 665,120 + -0.8 665,120 + -2.0 665,120 + -0.4 665,120 + +0.3 665,120 + +0.7 665,120 + +0.3 665,120 + -0.1 665,121 - +0.5 665,121 - +0.1 665,123 + -0.4 665,123 + -0.0 665,123 + -0.8 665,124 - +0.5 665,124 - -0.1 665,124 - +1.0 665,236 + -1.2 665,237 - +0.4 665,237 - +0.6 665,257 - COO64_RS05735 0.11 +0.7 665,350 + COO64_RS05735 0.19 +0.2 665,351 - COO64_RS05735 0.19 -1.3 665,351 - COO64_RS05735 0.19 -0.3 665,576 - COO64_RS05735 0.38 -0.9 665,576 - COO64_RS05735 0.38 -0.3 665,578 + COO64_RS05735 0.38 -1.6 665,578 + COO64_RS05735 0.38 -0.3 665,579 - COO64_RS05735 0.38 -0.4 665,579 - COO64_RS05735 0.38 -0.6 665,579 - COO64_RS05735 0.38 +0.2 665,729 + COO64_RS05735 0.50 -0.0 665,729 + COO64_RS05735 0.50 +0.4 665,729 + COO64_RS05735 0.50 +0.2 665,729 + COO64_RS05735 0.50 -0.4 665,729 + COO64_RS05735 0.50 +0.1 665,729 + COO64_RS05735 0.50 -0.4 665,729 + COO64_RS05735 0.50 +0.2 665,730 - COO64_RS05735 0.51 -1.3 665,730 - COO64_RS05735 0.51 +0.5 665,730 - COO64_RS05735 0.51 -0.4 665,770 + COO64_RS05735 0.54 +0.6 665,770 + COO64_RS05735 0.54 +0.3 665,770 + COO64_RS05735 0.54 +0.9 665,771 - COO64_RS05735 0.54 +0.0 665,771 - COO64_RS05735 0.54 +0.2 665,771 - COO64_RS05735 0.54 +0.9 665,813 + COO64_RS05735 0.57 -1.0
Or see this region's nucleotide sequence