Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS02870 and COO64_RS02875 are separated by 39 nucleotides COO64_RS02875 and COO64_RS02880 are separated by 94 nucleotides COO64_RS02880 and COO64_RS02885 are separated by 361 nucleotides
COO64_RS02870: COO64_RS02870 - N-acetyltransferase, at 47,989 to 48,468
_RS02870
COO64_RS02875: COO64_RS02875 - DJ-1 family glyoxalase III, at 48,508 to 49,056
_RS02875
COO64_RS02880: COO64_RS02880 - MFS transporter, at 49,151 to 50,377
_RS02880
COO64_RS02885: COO64_RS02885 - cytochrome ubiquinol oxidase subunit I, at 50,739 to 52,178
_RS02885
Position (kb) 49
50
51 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 48.386 kb on - strand, within COO64_RS02870 at 48.439 kb on + strand at 48.439 kb on + strand at 48.440 kb on - strand at 48.474 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.483 kb on + strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.488 kb on - strand at 48.488 kb on - strand at 48.602 kb on + strand, within COO64_RS02875 at 48.602 kb on + strand, within COO64_RS02875 at 48.603 kb on - strand, within COO64_RS02875 at 48.603 kb on - strand, within COO64_RS02875 at 48.844 kb on + strand, within COO64_RS02875 at 48.844 kb on + strand, within COO64_RS02875 at 48.845 kb on - strand, within COO64_RS02875 at 48.845 kb on - strand, within COO64_RS02875 at 48.942 kb on + strand, within COO64_RS02875 at 48.942 kb on + strand, within COO64_RS02875 at 48.942 kb on + strand, within COO64_RS02875 at 48.942 kb on + strand, within COO64_RS02875 at 48.943 kb on - strand, within COO64_RS02875 at 48.943 kb on - strand, within COO64_RS02875 at 48.943 kb on - strand, within COO64_RS02875 at 48.943 kb on - strand, within COO64_RS02875 at 48.943 kb on - strand, within COO64_RS02875 at 48.943 kb on - strand, within COO64_RS02875 at 49.174 kb on + strand at 49.174 kb on + strand at 49.174 kb on + strand at 49.174 kb on + strand at 49.175 kb on - strand at 49.175 kb on - strand at 49.175 kb on - strand at 49.175 kb on - strand at 49.823 kb on + strand, within COO64_RS02880 at 49.823 kb on + strand, within COO64_RS02880 at 49.839 kb on + strand, within COO64_RS02880 at 49.839 kb on + strand, within COO64_RS02880 at 49.839 kb on + strand, within COO64_RS02880 at 49.840 kb on - strand, within COO64_RS02880 at 49.860 kb on + strand, within COO64_RS02880 at 49.861 kb on - strand, within COO64_RS02880 at 49.861 kb on - strand, within COO64_RS02880 at 49.861 kb on - strand, within COO64_RS02880 at 49.861 kb on - strand, within COO64_RS02880 at 49.861 kb on - strand, within COO64_RS02880 at 49.861 kb on - strand, within COO64_RS02880 at 49.884 kb on + strand, within COO64_RS02880 at 49.885 kb on - strand, within COO64_RS02880 at 50.259 kb on + strand at 50.260 kb on - strand at 50.308 kb on + strand at 50.358 kb on - strand at 50.419 kb on + strand at 50.419 kb on + strand at 50.419 kb on + strand at 50.419 kb on + strand at 50.420 kb on - strand at 50.420 kb on - strand at 50.438 kb on + strand at 50.439 kb on - strand at 50.439 kb on - strand at 50.439 kb on - strand at 50.439 kb on - strand at 50.556 kb on + strand at 50.556 kb on + strand at 50.557 kb on - strand at 50.643 kb on + strand at 50.643 kb on + strand at 50.643 kb on + strand at 50.674 kb on + strand at 50.674 kb on + strand at 50.675 kb on - strand at 50.675 kb on - strand at 50.675 kb on - strand at 50.719 kb on + strand at 50.719 kb on + strand at 50.720 kb on - strand at 50.720 kb on - strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.738 kb on + strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.739 kb on - strand at 50.749 kb on + strand at 50.750 kb on - strand at 50.758 kb on + strand at 50.758 kb on + strand at 50.759 kb on - strand at 50.759 kb on - strand at 50.759 kb on - strand at 50.759 kb on - strand at 50.838 kb on + strand at 50.838 kb on + strand at 50.838 kb on + strand at 50.838 kb on + strand at 50.838 kb on + strand at 50.838 kb on + strand at 50.839 kb on - strand at 50.839 kb on - strand at 50.839 kb on - strand at 50.839 kb on - strand at 50.898 kb on + strand, within COO64_RS02885 at 50.899 kb on - strand, within COO64_RS02885 at 50.967 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.036 kb on + strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.037 kb on - strand, within COO64_RS02885 at 51.043 kb on + strand, within COO64_RS02885 at 51.043 kb on + strand, within COO64_RS02885 at 51.044 kb on - strand, within COO64_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X remove 48,386 - COO64_RS02870 0.83 -1.1 48,439 + +0.6 48,439 + -1.1 48,440 - -0.3 48,474 + +0.2 48,483 + +0.9 48,483 + +0.1 48,483 + -0.4 48,483 + -0.9 48,483 + +1.2 48,483 + +0.1 48,483 + -0.8 48,483 + -0.6 48,483 + +0.9 48,483 + -0.1 48,483 + +0.7 48,483 + -0.2 48,483 + +0.7 48,483 + -2.2 48,483 + -0.8 48,483 + +0.4 48,484 - -0.2 48,484 - +1.1 48,484 - +0.6 48,484 - -0.7 48,484 - +0.1 48,484 - -0.4 48,484 - -0.2 48,488 - +0.6 48,488 - -1.4 48,602 + COO64_RS02875 0.17 +1.2 48,602 + COO64_RS02875 0.17 -0.2 48,603 - COO64_RS02875 0.17 +0.7 48,603 - COO64_RS02875 0.17 +0.1 48,844 + COO64_RS02875 0.61 -0.7 48,844 + COO64_RS02875 0.61 +0.3 48,845 - COO64_RS02875 0.61 -0.2 48,845 - COO64_RS02875 0.61 +1.2 48,942 + COO64_RS02875 0.79 -1.0 48,942 + COO64_RS02875 0.79 +0.4 48,942 + COO64_RS02875 0.79 -0.2 48,942 + COO64_RS02875 0.79 -1.9 48,943 - COO64_RS02875 0.79 +0.5 48,943 - COO64_RS02875 0.79 -0.2 48,943 - COO64_RS02875 0.79 -1.4 48,943 - COO64_RS02875 0.79 +0.1 48,943 - COO64_RS02875 0.79 +0.9 48,943 - COO64_RS02875 0.79 +0.1 49,174 + +0.6 49,174 + -0.4 49,174 + -1.7 49,174 + +0.1 49,175 - +2.0 49,175 - +0.6 49,175 - -0.0 49,175 - -0.0 49,823 + COO64_RS02880 0.55 +1.2 49,823 + COO64_RS02880 0.55 -0.9 49,839 + COO64_RS02880 0.56 -0.8 49,839 + COO64_RS02880 0.56 -0.5 49,839 + COO64_RS02880 0.56 -1.4 49,840 - COO64_RS02880 0.56 -0.7 49,860 + COO64_RS02880 0.58 -0.9 49,861 - COO64_RS02880 0.58 -0.6 49,861 - COO64_RS02880 0.58 -0.6 49,861 - COO64_RS02880 0.58 -2.6 49,861 - COO64_RS02880 0.58 -0.0 49,861 - COO64_RS02880 0.58 +0.5 49,861 - COO64_RS02880 0.58 -1.4 49,884 + COO64_RS02880 0.60 +0.0 49,885 - COO64_RS02880 0.60 -0.6 50,259 + -0.8 50,260 - -0.4 50,308 + -0.2 50,358 - +0.5 50,419 + -0.3 50,419 + -1.0 50,419 + -0.9 50,419 + -1.8 50,420 - -0.3 50,420 - +0.6 50,438 + +1.7 50,439 - +0.8 50,439 - -1.0 50,439 - +1.3 50,439 - +1.0 50,556 + -0.4 50,556 + +0.8 50,557 - -0.4 50,643 + -0.4 50,643 + +2.2 50,643 + -0.8 50,674 + -0.3 50,674 + +0.3 50,675 - +0.9 50,675 - +0.3 50,675 - +0.4 50,719 + -1.4 50,719 + -0.1 50,720 - -1.0 50,720 - +0.6 50,738 + -0.4 50,738 + +0.6 50,738 + +1.6 50,738 + -1.4 50,738 + -0.8 50,738 + +0.2 50,738 + -2.2 50,738 + +0.2 50,738 + +0.3 50,738 + +1.4 50,738 + +0.6 50,738 + +0.6 50,738 + -1.2 50,739 - -0.3 50,739 - +0.4 50,739 - -0.0 50,739 - +0.8 50,739 - -0.5 50,739 - -0.6 50,739 - +0.3 50,739 - -0.3 50,739 - +1.6 50,749 + +0.8 50,750 - +0.8 50,758 + -0.2 50,758 + -0.3 50,759 - +0.2 50,759 - -0.0 50,759 - -0.9 50,759 - +0.8 50,838 + +1.2 50,838 + +1.0 50,838 + +0.5 50,838 + +0.9 50,838 + -0.6 50,838 + +0.7 50,839 - -0.2 50,839 - -0.0 50,839 - +0.8 50,839 - -0.9 50,898 + COO64_RS02885 0.11 -0.3 50,899 - COO64_RS02885 0.11 -0.4 50,967 + COO64_RS02885 0.16 -0.2 51,036 + COO64_RS02885 0.21 +1.2 51,036 + COO64_RS02885 0.21 -0.1 51,036 + COO64_RS02885 0.21 +0.2 51,036 + COO64_RS02885 0.21 -0.6 51,036 + COO64_RS02885 0.21 -0.2 51,036 + COO64_RS02885 0.21 +0.1 51,036 + COO64_RS02885 0.21 -1.0 51,036 + COO64_RS02885 0.21 -2.5 51,037 - COO64_RS02885 0.21 -1.7 51,037 - COO64_RS02885 0.21 +4.2 51,037 - COO64_RS02885 0.21 +0.2 51,037 - COO64_RS02885 0.21 +0.7 51,037 - COO64_RS02885 0.21 +0.2 51,037 - COO64_RS02885 0.21 -0.1 51,037 - COO64_RS02885 0.21 +0.6 51,037 - COO64_RS02885 0.21 -0.3 51,037 - COO64_RS02885 0.21 -1.2 51,037 - COO64_RS02885 0.21 -0.6 51,037 - COO64_RS02885 0.21 -0.3 51,037 - COO64_RS02885 0.21 -1.0 51,043 + COO64_RS02885 0.21 +1.8 51,043 + COO64_RS02885 0.21 +1.3 51,044 - COO64_RS02885 0.21 +0.4
Or see this region's nucleotide sequence