Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05469

Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05468 and BACOVA_05469 are separated by 34 nucleotidesBACOVA_05469 and BACOVA_05470 are separated by 143 nucleotides BACOVA_05468: BACOVA_05468 - heparinase II/III-like protein, at 956,614 to 959,235 _05468 BACOVA_05469: BACOVA_05469 - transporter, major facilitator family protein, at 959,270 to 960,538 _05469 BACOVA_05470: BACOVA_05470 - ROK family protein, at 960,682 to 961,623 _05470 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2 3at 958.303 kb on + strand, within BACOVA_05468at 958.381 kb on - strand, within BACOVA_05468at 958.450 kb on - strand, within BACOVA_05468at 958.461 kb on - strand, within BACOVA_05468at 958.464 kb on - strand, within BACOVA_05468at 958.464 kb on - strand, within BACOVA_05468at 958.466 kb on - strand, within BACOVA_05468at 958.466 kb on - strand, within BACOVA_05468at 958.487 kb on + strand, within BACOVA_05468at 958.528 kb on + strand, within BACOVA_05468at 958.539 kb on + strand, within BACOVA_05468at 958.602 kb on + strand, within BACOVA_05468at 958.662 kb on + strand, within BACOVA_05468at 958.663 kb on - strand, within BACOVA_05468at 958.664 kb on + strand, within BACOVA_05468at 958.665 kb on - strand, within BACOVA_05468at 958.665 kb on - strand, within BACOVA_05468at 958.665 kb on - strand, within BACOVA_05468at 958.705 kb on - strand, within BACOVA_05468at 958.705 kb on - strand, within BACOVA_05468at 958.798 kb on + strand, within BACOVA_05468at 958.799 kb on - strand, within BACOVA_05468at 958.799 kb on - strand, within BACOVA_05468at 958.811 kb on - strand, within BACOVA_05468at 958.811 kb on - strand, within BACOVA_05468at 958.812 kb on + strand, within BACOVA_05468at 958.824 kb on - strand, within BACOVA_05468at 958.991 kb on - strandat 959.003 kb on + strandat 959.003 kb on + strandat 959.064 kb on + strandat 959.085 kb on + strandat 959.088 kb on + strandat 959.088 kb on + strandat 959.089 kb on - strandat 959.193 kb on + strandat 959.235 kb on + strandat 959.236 kb on - strandat 959.237 kb on + strandat 959.238 kb on - strandat 959.311 kb on + strandat 959.351 kb on - strandat 959.351 kb on - strandat 959.352 kb on + strandat 959.352 kb on + strandat 959.352 kb on + strandat 959.353 kb on - strandat 959.353 kb on - strandat 959.380 kb on + strandat 959.418 kb on - strand, within BACOVA_05469at 959.418 kb on - strand, within BACOVA_05469at 959.418 kb on - strand, within BACOVA_05469at 959.462 kb on + strand, within BACOVA_05469at 959.462 kb on + strand, within BACOVA_05469at 959.462 kb on + strand, within BACOVA_05469at 959.526 kb on + strand, within BACOVA_05469at 959.573 kb on + strand, within BACOVA_05469at 959.573 kb on + strand, within BACOVA_05469at 959.582 kb on - strand, within BACOVA_05469at 959.582 kb on - strand, within BACOVA_05469at 959.600 kb on + strand, within BACOVA_05469at 959.607 kb on - strand, within BACOVA_05469at 959.674 kb on + strand, within BACOVA_05469at 959.675 kb on - strand, within BACOVA_05469at 959.675 kb on - strand, within BACOVA_05469at 959.774 kb on - strand, within BACOVA_05469at 959.808 kb on - strand, within BACOVA_05469at 959.808 kb on - strand, within BACOVA_05469at 959.811 kb on + strand, within BACOVA_05469at 959.840 kb on + strand, within BACOVA_05469at 959.840 kb on + strand, within BACOVA_05469at 959.841 kb on - strand, within BACOVA_05469at 959.844 kb on + strand, within BACOVA_05469at 959.845 kb on - strand, within BACOVA_05469at 959.869 kb on - strand, within BACOVA_05469at 959.879 kb on - strand, within BACOVA_05469at 959.940 kb on - strand, within BACOVA_05469at 959.940 kb on - strand, within BACOVA_05469at 959.954 kb on + strand, within BACOVA_05469at 959.954 kb on + strand, within BACOVA_05469at 959.955 kb on - strand, within BACOVA_05469at 959.965 kb on + strand, within BACOVA_05469at 959.969 kb on + strand, within BACOVA_05469at 959.976 kb on + strand, within BACOVA_05469at 960.040 kb on + strand, within BACOVA_05469at 960.049 kb on + strand, within BACOVA_05469at 960.052 kb on - strand, within BACOVA_05469at 960.081 kb on + strand, within BACOVA_05469at 960.081 kb on + strand, within BACOVA_05469at 960.081 kb on + strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.089 kb on + strand, within BACOVA_05469at 960.089 kb on + strand, within BACOVA_05469at 960.089 kb on + strand, within BACOVA_05469at 960.101 kb on + strand, within BACOVA_05469at 960.101 kb on + strand, within BACOVA_05469at 960.101 kb on + strand, within BACOVA_05469at 960.204 kb on - strand, within BACOVA_05469at 960.204 kb on - strand, within BACOVA_05469at 960.255 kb on + strand, within BACOVA_05469at 960.275 kb on + strand, within BACOVA_05469at 960.276 kb on - strand, within BACOVA_05469at 960.314 kb on + strand, within BACOVA_05469at 960.315 kb on - strand, within BACOVA_05469at 960.315 kb on - strand, within BACOVA_05469at 960.400 kb on + strand, within BACOVA_05469at 960.401 kb on - strand, within BACOVA_05469at 960.464 kb on + strandat 960.544 kb on + strandat 960.545 kb on - strandat 960.555 kb on + strandat 960.563 kb on - strandat 960.563 kb on - strandat 960.563 kb on - strandat 960.576 kb on + strandat 960.610 kb on - strandat 960.639 kb on + strandat 960.650 kb on + strandat 960.658 kb on - strandat 960.754 kb on - strandat 960.779 kb on + strand, within BACOVA_05470at 960.779 kb on + strand, within BACOVA_05470at 960.780 kb on - strand, within BACOVA_05470at 960.780 kb on - strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.870 kb on + strand, within BACOVA_05470at 960.871 kb on - strand, within BACOVA_05470at 960.874 kb on - strand, within BACOVA_05470at 960.939 kb on + strand, within BACOVA_05470at 960.978 kb on + strand, within BACOVA_05470at 961.003 kb on - strand, within BACOVA_05470at 961.037 kb on - strand, within BACOVA_05470at 961.058 kb on + strand, within BACOVA_05470at 961.058 kb on + strand, within BACOVA_05470at 961.059 kb on - strand, within BACOVA_05470at 961.059 kb on - strand, within BACOVA_05470at 961.202 kb on - strand, within BACOVA_05470at 961.208 kb on - strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.333 kb on + strand, within BACOVA_05470at 961.334 kb on - strand, within BACOVA_05470at 961.334 kb on - strand, within BACOVA_05470at 961.394 kb on - strand, within BACOVA_05470at 961.407 kb on + strand, within BACOVA_05470at 961.407 kb on + strand, within BACOVA_05470at 961.408 kb on - strand, within BACOVA_05470at 961.417 kb on + strand, within BACOVA_05470at 961.417 kb on + strand, within BACOVA_05470at 961.420 kb on - strand, within BACOVA_05470at 961.471 kb on - strand, within BACOVA_05470

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C)
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958,303 + BACOVA_05468 0.64 +0.6
958,381 - BACOVA_05468 0.67 +2.3
958,450 - BACOVA_05468 0.70 -0.2
958,461 - BACOVA_05468 0.70 -1.6
958,464 - BACOVA_05468 0.71 +0.0
958,464 - BACOVA_05468 0.71 -0.0
958,466 - BACOVA_05468 0.71 -0.5
958,466 - BACOVA_05468 0.71 -0.3
958,487 + BACOVA_05468 0.71 +0.0
958,528 + BACOVA_05468 0.73 -0.2
958,539 + BACOVA_05468 0.73 -1.4
958,602 + BACOVA_05468 0.76 -0.7
958,662 + BACOVA_05468 0.78 +0.4
958,663 - BACOVA_05468 0.78 +0.0
958,664 + BACOVA_05468 0.78 -1.6
958,665 - BACOVA_05468 0.78 -2.7
958,665 - BACOVA_05468 0.78 -0.0
958,665 - BACOVA_05468 0.78 -0.9
958,705 - BACOVA_05468 0.80 -1.3
958,705 - BACOVA_05468 0.80 +0.9
958,798 + BACOVA_05468 0.83 +0.3
958,799 - BACOVA_05468 0.83 -0.5
958,799 - BACOVA_05468 0.83 +0.2
958,811 - BACOVA_05468 0.84 +0.4
958,811 - BACOVA_05468 0.84 -0.3
958,812 + BACOVA_05468 0.84 +0.1
958,824 - BACOVA_05468 0.84 -1.0
958,991 - +0.9
959,003 + -1.9
959,003 + -1.7
959,064 + -1.2
959,085 + +2.7
959,088 + +0.3
959,088 + +0.6
959,089 - -1.6
959,193 + -1.5
959,235 + -0.5
959,236 - +0.5
959,237 + -0.4
959,238 - +2.8
959,311 + +0.5
959,351 - -0.2
959,351 - -1.4
959,352 + -1.0
959,352 + -1.0
959,352 + +0.9
959,353 - +0.3
959,353 - +0.5
959,380 + -0.2
959,418 - BACOVA_05469 0.12 -0.2
959,418 - BACOVA_05469 0.12 -0.7
959,418 - BACOVA_05469 0.12 +1.1
959,462 + BACOVA_05469 0.15 +0.4
959,462 + BACOVA_05469 0.15 +1.2
959,462 + BACOVA_05469 0.15 -0.4
959,526 + BACOVA_05469 0.20 +1.0
959,573 + BACOVA_05469 0.24 +0.3
959,573 + BACOVA_05469 0.24 +1.6
959,582 - BACOVA_05469 0.25 -1.2
959,582 - BACOVA_05469 0.25 +0.0
959,600 + BACOVA_05469 0.26 +2.0
959,607 - BACOVA_05469 0.27 -0.5
959,674 + BACOVA_05469 0.32 -2.1
959,675 - BACOVA_05469 0.32 +0.1
959,675 - BACOVA_05469 0.32 +0.9
959,774 - BACOVA_05469 0.40 -1.3
959,808 - BACOVA_05469 0.42 -1.2
959,808 - BACOVA_05469 0.42 +1.0
959,811 + BACOVA_05469 0.43 +0.2
959,840 + BACOVA_05469 0.45 -0.1
959,840 + BACOVA_05469 0.45 +0.2
959,841 - BACOVA_05469 0.45 -0.2
959,844 + BACOVA_05469 0.45 +2.1
959,845 - BACOVA_05469 0.45 -1.1
959,869 - BACOVA_05469 0.47 +1.2
959,879 - BACOVA_05469 0.48 -0.2
959,940 - BACOVA_05469 0.53 -0.6
959,940 - BACOVA_05469 0.53 +0.0
959,954 + BACOVA_05469 0.54 -0.2
959,954 + BACOVA_05469 0.54 -1.7
959,955 - BACOVA_05469 0.54 -1.0
959,965 + BACOVA_05469 0.55 +0.7
959,969 + BACOVA_05469 0.55 +0.4
959,976 + BACOVA_05469 0.56 -1.3
960,040 + BACOVA_05469 0.61 -0.1
960,049 + BACOVA_05469 0.61 -1.9
960,052 - BACOVA_05469 0.62 -0.5
960,081 + BACOVA_05469 0.64 +1.0
960,081 + BACOVA_05469 0.64 +1.2
960,081 + BACOVA_05469 0.64 +1.0
960,086 - BACOVA_05469 0.64 +1.0
960,086 - BACOVA_05469 0.64 -1.4
960,086 - BACOVA_05469 0.64 -1.3
960,086 - BACOVA_05469 0.64 -1.0
960,089 + BACOVA_05469 0.65 +0.9
960,089 + BACOVA_05469 0.65 -2.3
960,089 + BACOVA_05469 0.65 -0.3
960,101 + BACOVA_05469 0.65 -1.3
960,101 + BACOVA_05469 0.65 -0.8
960,101 + BACOVA_05469 0.65 -0.1
960,204 - BACOVA_05469 0.74 +1.1
960,204 - BACOVA_05469 0.74 -0.0
960,255 + BACOVA_05469 0.78 +1.1
960,275 + BACOVA_05469 0.79 -1.9
960,276 - BACOVA_05469 0.79 -0.9
960,314 + BACOVA_05469 0.82 +0.4
960,315 - BACOVA_05469 0.82 -0.7
960,315 - BACOVA_05469 0.82 -0.4
960,400 + BACOVA_05469 0.89 +2.2
960,401 - BACOVA_05469 0.89 -1.0
960,464 + +1.1
960,544 + -1.1
960,545 - -1.3
960,555 + +0.0
960,563 - +0.0
960,563 - -0.1
960,563 - +1.3
960,576 + +0.1
960,610 - +2.1
960,639 + +0.4
960,650 + -0.7
960,658 - -0.7
960,754 - +0.1
960,779 + BACOVA_05470 0.10 +1.3
960,779 + BACOVA_05470 0.10 -2.3
960,780 - BACOVA_05470 0.10 -0.2
960,780 - BACOVA_05470 0.10 +1.7
960,812 + BACOVA_05470 0.14 +1.7
960,812 + BACOVA_05470 0.14 -1.5
960,812 + BACOVA_05470 0.14 -1.7
960,812 + BACOVA_05470 0.14 -1.3
960,870 + BACOVA_05470 0.20 -0.1
960,871 - BACOVA_05470 0.20 -0.4
960,874 - BACOVA_05470 0.20 -0.2
960,939 + BACOVA_05470 0.27 -0.8
960,978 + BACOVA_05470 0.31 -1.6
961,003 - BACOVA_05470 0.34 -0.6
961,037 - BACOVA_05470 0.38 +2.1
961,058 + BACOVA_05470 0.40 -1.0
961,058 + BACOVA_05470 0.40 +1.1
961,059 - BACOVA_05470 0.40 -0.3
961,059 - BACOVA_05470 0.40 +0.1
961,202 - BACOVA_05470 0.55 -0.4
961,208 - BACOVA_05470 0.56 -0.2
961,244 + BACOVA_05470 0.60 -0.0
961,244 + BACOVA_05470 0.60 +0.5
961,244 + BACOVA_05470 0.60 +0.7
961,333 + BACOVA_05470 0.69 -1.1
961,334 - BACOVA_05470 0.69 +1.6
961,334 - BACOVA_05470 0.69 +1.0
961,394 - BACOVA_05470 0.76 +1.8
961,407 + BACOVA_05470 0.77 -2.5
961,407 + BACOVA_05470 0.77 -0.4
961,408 - BACOVA_05470 0.77 -1.7
961,417 + BACOVA_05470 0.78 +0.8
961,417 + BACOVA_05470 0.78 +0.4
961,420 - BACOVA_05470 0.78 -0.8
961,471 - BACOVA_05470 0.84 +0.9

Or see this region's nucleotide sequence