Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05424

Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05423 and BACOVA_05424 are separated by 28 nucleotidesBACOVA_05424 and BACOVA_05425 are separated by 140 nucleotidesBACOVA_05425 and BACOVA_05426 are separated by 2 nucleotidesBACOVA_05426 and BACOVA_05427 are separated by 64 nucleotides BACOVA_05423: BACOVA_05423 - site-specific recombinase, phage integrase family, at 905,025 to 906,197 _05423 BACOVA_05424: BACOVA_05424 - site-specific recombinase, phage integrase family, at 906,226 to 907,494 _05424 BACOVA_05425: BACOVA_05425 - DNA binding domain, excisionase family, at 907,635 to 907,952 _05425 BACOVA_05426: BACOVA_05426 - hypothetical protein, at 907,955 to 908,272 _05426 BACOVA_05427: BACOVA_05427 - hypothetical protein, at 908,337 to 909,167 _05427 Position (kb) 906 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 905.269 kb on + strand, within BACOVA_05423at 905.269 kb on + strand, within BACOVA_05423at 905.312 kb on + strand, within BACOVA_05423at 905.312 kb on + strand, within BACOVA_05423at 905.313 kb on - strand, within BACOVA_05423at 905.328 kb on + strand, within BACOVA_05423at 905.486 kb on + strand, within BACOVA_05423at 905.528 kb on + strand, within BACOVA_05423at 905.554 kb on - strand, within BACOVA_05423at 905.679 kb on - strand, within BACOVA_05423at 905.679 kb on - strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.682 kb on - strand, within BACOVA_05423at 905.682 kb on - strand, within BACOVA_05423at 905.683 kb on + strand, within BACOVA_05423at 905.704 kb on + strand, within BACOVA_05423at 905.705 kb on - strand, within BACOVA_05423at 905.705 kb on - strand, within BACOVA_05423at 905.708 kb on + strand, within BACOVA_05423at 905.708 kb on + strand, within BACOVA_05423at 905.784 kb on + strand, within BACOVA_05423at 905.784 kb on + strand, within BACOVA_05423at 905.784 kb on + strand, within BACOVA_05423at 905.785 kb on - strand, within BACOVA_05423at 905.835 kb on + strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.839 kb on + strand, within BACOVA_05423at 905.840 kb on - strand, within BACOVA_05423at 905.840 kb on - strand, within BACOVA_05423at 905.840 kb on - strand, within BACOVA_05423at 905.874 kb on - strand, within BACOVA_05423at 905.875 kb on + strand, within BACOVA_05423at 905.875 kb on + strand, within BACOVA_05423at 905.939 kb on - strand, within BACOVA_05423at 905.968 kb on + strand, within BACOVA_05423at 905.968 kb on + strand, within BACOVA_05423at 905.969 kb on - strand, within BACOVA_05423at 906.018 kb on - strand, within BACOVA_05423at 906.083 kb on + strandat 906.133 kb on - strandat 906.220 kb on - strandat 906.220 kb on - strandat 906.220 kb on - strandat 906.220 kb on - strandat 906.233 kb on + strandat 906.234 kb on - strandat 906.234 kb on - strandat 906.234 kb on - strandat 906.234 kb on - strandat 906.238 kb on - strandat 906.269 kb on + strandat 906.269 kb on + strandat 906.269 kb on + strandat 906.270 kb on - strandat 906.277 kb on + strandat 906.289 kb on + strandat 906.289 kb on + strandat 906.290 kb on - strandat 906.348 kb on - strandat 906.398 kb on + strand, within BACOVA_05424at 906.440 kb on + strand, within BACOVA_05424at 906.511 kb on + strand, within BACOVA_05424at 906.511 kb on + strand, within BACOVA_05424at 906.584 kb on + strand, within BACOVA_05424at 906.584 kb on + strand, within BACOVA_05424at 906.584 kb on + strand, within BACOVA_05424at 906.685 kb on + strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.700 kb on + strand, within BACOVA_05424at 906.701 kb on - strand, within BACOVA_05424at 906.701 kb on - strand, within BACOVA_05424at 906.704 kb on + strand, within BACOVA_05424at 906.864 kb on + strand, within BACOVA_05424at 906.864 kb on + strand, within BACOVA_05424at 906.966 kb on - strand, within BACOVA_05424at 907.012 kb on - strand, within BACOVA_05424at 907.188 kb on + strand, within BACOVA_05424at 907.188 kb on + strand, within BACOVA_05424at 907.213 kb on - strand, within BACOVA_05424at 907.236 kb on + strand, within BACOVA_05424at 907.237 kb on - strand, within BACOVA_05424at 907.237 kb on - strand, within BACOVA_05424at 907.327 kb on + strand, within BACOVA_05424at 907.328 kb on - strand, within BACOVA_05424at 907.492 kb on + strandat 907.523 kb on - strandat 907.536 kb on + strandat 907.602 kb on - strandat 907.676 kb on - strand, within BACOVA_05425at 907.736 kb on - strand, within BACOVA_05425at 907.759 kb on + strand, within BACOVA_05425at 907.760 kb on - strand, within BACOVA_05425at 907.769 kb on + strand, within BACOVA_05425at 907.788 kb on + strand, within BACOVA_05425at 907.841 kb on + strand, within BACOVA_05425at 907.841 kb on + strand, within BACOVA_05425at 907.841 kb on + strand, within BACOVA_05425at 907.842 kb on - strand, within BACOVA_05425at 908.042 kb on - strand, within BACOVA_05426at 908.054 kb on + strand, within BACOVA_05426at 908.187 kb on + strand, within BACOVA_05426at 908.200 kb on + strand, within BACOVA_05426at 908.225 kb on + strand, within BACOVA_05426at 908.266 kb on + strandat 908.266 kb on + strandat 908.266 kb on + strandat 908.267 kb on - strandat 908.267 kb on - strandat 908.313 kb on + strandat 908.315 kb on + strandat 908.315 kb on + strandat 908.315 kb on + strandat 908.353 kb on + strandat 908.354 kb on - strandat 908.359 kb on - strandat 908.380 kb on + strandat 908.380 kb on + strandat 908.380 kb on + strandat 908.380 kb on + strandat 908.381 kb on - strandat 908.381 kb on - strandat 908.381 kb on - strandat 908.392 kb on - strandat 908.392 kb on - strandat 908.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C)
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905,269 + BACOVA_05423 0.21 +1.1
905,269 + BACOVA_05423 0.21 -0.2
905,312 + BACOVA_05423 0.24 -0.3
905,312 + BACOVA_05423 0.24 +1.1
905,313 - BACOVA_05423 0.25 +0.7
905,328 + BACOVA_05423 0.26 -0.0
905,486 + BACOVA_05423 0.39 +0.5
905,528 + BACOVA_05423 0.43 +0.4
905,554 - BACOVA_05423 0.45 +1.6
905,679 - BACOVA_05423 0.56 -0.4
905,679 - BACOVA_05423 0.56 -1.2
905,681 + BACOVA_05423 0.56 +0.7
905,681 + BACOVA_05423 0.56 +1.1
905,681 + BACOVA_05423 0.56 +0.2
905,681 + BACOVA_05423 0.56 -1.3
905,681 + BACOVA_05423 0.56 +0.2
905,682 - BACOVA_05423 0.56 +0.3
905,682 - BACOVA_05423 0.56 +1.4
905,683 + BACOVA_05423 0.56 +0.4
905,704 + BACOVA_05423 0.58 -0.4
905,705 - BACOVA_05423 0.58 -0.3
905,705 - BACOVA_05423 0.58 -0.1
905,708 + BACOVA_05423 0.58 -0.6
905,708 + BACOVA_05423 0.58 -0.5
905,784 + BACOVA_05423 0.65 -1.5
905,784 + BACOVA_05423 0.65 -2.1
905,784 + BACOVA_05423 0.65 -2.4
905,785 - BACOVA_05423 0.65 +0.0
905,835 + BACOVA_05423 0.69 -1.7
905,836 - BACOVA_05423 0.69 -0.0
905,836 - BACOVA_05423 0.69 -0.1
905,836 - BACOVA_05423 0.69 -1.5
905,836 - BACOVA_05423 0.69 -2.4
905,839 + BACOVA_05423 0.69 -1.2
905,840 - BACOVA_05423 0.69 -1.2
905,840 - BACOVA_05423 0.69 -0.4
905,840 - BACOVA_05423 0.69 -1.5
905,874 - BACOVA_05423 0.72 -0.0
905,875 + BACOVA_05423 0.72 +0.9
905,875 + BACOVA_05423 0.72 -0.5
905,939 - BACOVA_05423 0.78 +2.1
905,968 + BACOVA_05423 0.80 -0.7
905,968 + BACOVA_05423 0.80 -0.3
905,969 - BACOVA_05423 0.80 +2.1
906,018 - BACOVA_05423 0.85 -1.5
906,083 + -1.5
906,133 - +0.5
906,220 - -0.9
906,220 - -0.0
906,220 - -0.9
906,220 - -2.3
906,233 + +1.3
906,234 - -2.2
906,234 - +0.5
906,234 - -0.2
906,234 - -2.2
906,238 - +2.0
906,269 + -2.0
906,269 + +0.2
906,269 + +0.8
906,270 - -1.0
906,277 + -0.5
906,289 + +0.1
906,289 + -1.8
906,290 - -0.5
906,348 - -0.7
906,398 + BACOVA_05424 0.14 -1.7
906,440 + BACOVA_05424 0.17 -1.6
906,511 + BACOVA_05424 0.22 +0.7
906,511 + BACOVA_05424 0.22 +1.7
906,584 + BACOVA_05424 0.28 -2.8
906,584 + BACOVA_05424 0.28 -1.1
906,584 + BACOVA_05424 0.28 +0.3
906,685 + BACOVA_05424 0.36 +1.9
906,686 - BACOVA_05424 0.36 +1.6
906,686 - BACOVA_05424 0.36 -0.5
906,686 - BACOVA_05424 0.36 -1.3
906,686 - BACOVA_05424 0.36 +0.6
906,700 + BACOVA_05424 0.37 +1.2
906,701 - BACOVA_05424 0.37 +0.2
906,701 - BACOVA_05424 0.37 -1.6
906,704 + BACOVA_05424 0.38 -2.2
906,864 + BACOVA_05424 0.50 -0.4
906,864 + BACOVA_05424 0.50 +2.4
906,966 - BACOVA_05424 0.58 +1.1
907,012 - BACOVA_05424 0.62 -0.2
907,188 + BACOVA_05424 0.76 -1.3
907,188 + BACOVA_05424 0.76 -0.9
907,213 - BACOVA_05424 0.78 +0.1
907,236 + BACOVA_05424 0.80 -2.4
907,237 - BACOVA_05424 0.80 -0.6
907,237 - BACOVA_05424 0.80 -0.2
907,327 + BACOVA_05424 0.87 +1.0
907,328 - BACOVA_05424 0.87 +0.5
907,492 + -0.0
907,523 - -0.8
907,536 + +0.1
907,602 - -0.0
907,676 - BACOVA_05425 0.13 +0.4
907,736 - BACOVA_05425 0.32 -2.1
907,759 + BACOVA_05425 0.39 +0.2
907,760 - BACOVA_05425 0.39 -0.3
907,769 + BACOVA_05425 0.42 -0.7
907,788 + BACOVA_05425 0.48 +1.7
907,841 + BACOVA_05425 0.65 +1.3
907,841 + BACOVA_05425 0.65 +0.5
907,841 + BACOVA_05425 0.65 -0.5
907,842 - BACOVA_05425 0.65 +1.8
908,042 - BACOVA_05426 0.27 -0.5
908,054 + BACOVA_05426 0.31 +0.8
908,187 + BACOVA_05426 0.73 +0.8
908,200 + BACOVA_05426 0.77 +2.1
908,225 + BACOVA_05426 0.85 -0.8
908,266 + -0.5
908,266 + -0.2
908,266 + +0.4
908,267 - +0.3
908,267 - +0.1
908,313 + -0.5
908,315 + -1.0
908,315 + +0.1
908,315 + -0.5
908,353 + +2.1
908,354 - +0.3
908,359 - -0.7
908,380 + +1.5
908,380 + -0.1
908,380 + +0.0
908,380 + +1.0
908,381 - +0.3
908,381 - -1.0
908,381 - -0.3
908,392 - -0.2
908,392 - -1.1
908,392 - -0.2

Or see this region's nucleotide sequence