Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03895 and BACOVA_03896 overlap by 4 nucleotides BACOVA_03896 and BACOVA_03897 are separated by 151 nucleotides BACOVA_03897 and BACOVA_03898 are separated by 60 nucleotides BACOVA_03898 and BACOVA_03899 overlap by 32 nucleotides
BACOVA_03895: BACOVA_03895 - hypothetical protein, at 236,648 to 237,412
_03895
BACOVA_03896: BACOVA_03896 - hypothetical protein, at 237,409 to 237,846
_03896
BACOVA_03897: BACOVA_03897 - hypothetical protein, at 237,998 to 238,249
_03897
BACOVA_03898: BACOVA_03898 - hypothetical protein, at 238,310 to 238,966
_03898
BACOVA_03899: BACOVA_03899 - hypothetical protein, at 238,935 to 239,687
_03899
Position (kb)
237
238
239 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 237.021 kb on - strand, within BACOVA_03895 at 237.023 kb on - strand, within BACOVA_03895 at 237.065 kb on - strand, within BACOVA_03895 at 237.170 kb on - strand, within BACOVA_03895 at 237.197 kb on - strand, within BACOVA_03895 at 237.221 kb on - strand, within BACOVA_03895 at 237.233 kb on - strand, within BACOVA_03895 at 237.273 kb on - strand, within BACOVA_03895 at 237.273 kb on - strand, within BACOVA_03895 at 237.281 kb on - strand, within BACOVA_03895 at 237.318 kb on - strand, within BACOVA_03895 at 237.430 kb on - strand at 237.483 kb on - strand, within BACOVA_03896 at 237.536 kb on - strand, within BACOVA_03896 at 237.544 kb on - strand, within BACOVA_03896 at 237.649 kb on - strand, within BACOVA_03896 at 237.733 kb on - strand, within BACOVA_03896 at 237.818 kb on - strand at 237.849 kb on - strand at 237.852 kb on - strand at 237.852 kb on - strand at 237.855 kb on - strand at 237.867 kb on - strand at 237.874 kb on - strand at 237.906 kb on - strand at 237.909 kb on - strand at 237.931 kb on - strand at 237.931 kb on - strand at 237.961 kb on - strand at 237.970 kb on + strand at 237.970 kb on + strand at 237.995 kb on - strand at 238.027 kb on + strand, within BACOVA_03897 at 238.095 kb on - strand, within BACOVA_03897 at 238.114 kb on + strand, within BACOVA_03897 at 238.152 kb on + strand, within BACOVA_03897 at 238.158 kb on - strand, within BACOVA_03897 at 238.158 kb on - strand, within BACOVA_03897 at 238.170 kb on - strand, within BACOVA_03897 at 238.216 kb on + strand, within BACOVA_03897 at 238.216 kb on + strand, within BACOVA_03897 at 238.217 kb on - strand, within BACOVA_03897 at 238.234 kb on + strand at 238.235 kb on - strand at 238.247 kb on + strand at 238.248 kb on - strand at 238.297 kb on - strand at 238.302 kb on - strand at 238.306 kb on - strand at 238.345 kb on + strand at 238.346 kb on - strand at 238.465 kb on - strand, within BACOVA_03898 at 238.490 kb on + strand, within BACOVA_03898 at 238.491 kb on - strand, within BACOVA_03898 at 238.491 kb on - strand, within BACOVA_03898 at 238.493 kb on - strand, within BACOVA_03898 at 238.536 kb on + strand, within BACOVA_03898 at 238.541 kb on + strand, within BACOVA_03898 at 238.544 kb on - strand, within BACOVA_03898 at 238.615 kb on + strand, within BACOVA_03898 at 238.666 kb on + strand, within BACOVA_03898 at 238.757 kb on - strand, within BACOVA_03898 at 238.822 kb on + strand, within BACOVA_03898 at 238.830 kb on + strand, within BACOVA_03898 at 238.831 kb on - strand, within BACOVA_03898 at 238.835 kb on - strand, within BACOVA_03898 at 238.911 kb on + strand at 238.920 kb on + strand at 238.921 kb on - strand at 238.948 kb on + strand at 238.949 kb on - strand at 238.952 kb on - strand at 238.954 kb on + strand at 238.954 kb on + strand at 239.009 kb on + strand at 239.041 kb on + strand, within BACOVA_03899 at 239.041 kb on + strand, within BACOVA_03899 at 239.185 kb on - strand, within BACOVA_03899 at 239.226 kb on + strand, within BACOVA_03899 at 239.231 kb on - strand, within BACOVA_03899 at 239.231 kb on - strand, within BACOVA_03899 at 239.234 kb on + strand, within BACOVA_03899 at 239.234 kb on + strand, within BACOVA_03899 at 239.235 kb on - strand, within BACOVA_03899 at 239.237 kb on + strand, within BACOVA_03899 at 239.237 kb on + strand, within BACOVA_03899
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C) remove 237,021 - BACOVA_03895 0.49 -1.5 237,023 - BACOVA_03895 0.49 +1.2 237,065 - BACOVA_03895 0.55 -0.6 237,170 - BACOVA_03895 0.68 -0.8 237,197 - BACOVA_03895 0.72 -1.0 237,221 - BACOVA_03895 0.75 -1.6 237,233 - BACOVA_03895 0.76 +0.3 237,273 - BACOVA_03895 0.82 -0.1 237,273 - BACOVA_03895 0.82 -1.2 237,281 - BACOVA_03895 0.83 +0.4 237,318 - BACOVA_03895 0.88 -0.3 237,430 - -1.6 237,483 - BACOVA_03896 0.17 +0.6 237,536 - BACOVA_03896 0.29 -0.6 237,544 - BACOVA_03896 0.31 -0.8 237,649 - BACOVA_03896 0.55 -0.8 237,733 - BACOVA_03896 0.74 -0.8 237,818 - -1.0 237,849 - +1.1 237,852 - -0.1 237,852 - -0.2 237,855 - -1.2 237,867 - +0.7 237,874 - -0.2 237,906 - +2.2 237,909 - +1.2 237,931 - -0.8 237,931 - -1.0 237,961 - -1.6 237,970 + +0.3 237,970 + -0.4 237,995 - -0.7 238,027 + BACOVA_03897 0.12 +1.5 238,095 - BACOVA_03897 0.38 +0.2 238,114 + BACOVA_03897 0.46 -2.0 238,152 + BACOVA_03897 0.61 +0.5 238,158 - BACOVA_03897 0.63 +0.5 238,158 - BACOVA_03897 0.63 +0.4 238,170 - BACOVA_03897 0.68 -0.4 238,216 + BACOVA_03897 0.87 +1.6 238,216 + BACOVA_03897 0.87 +0.5 238,217 - BACOVA_03897 0.87 -0.6 238,234 + -3.0 238,235 - +0.8 238,247 + -0.6 238,248 - -0.6 238,297 - +3.5 238,302 - +0.5 238,306 - -1.6 238,345 + -1.2 238,346 - -0.6 238,465 - BACOVA_03898 0.24 -1.2 238,490 + BACOVA_03898 0.27 -0.7 238,491 - BACOVA_03898 0.28 -0.1 238,491 - BACOVA_03898 0.28 +0.2 238,493 - BACOVA_03898 0.28 +0.6 238,536 + BACOVA_03898 0.34 +1.8 238,541 + BACOVA_03898 0.35 -0.2 238,544 - BACOVA_03898 0.36 +0.2 238,615 + BACOVA_03898 0.46 -1.9 238,666 + BACOVA_03898 0.54 -1.0 238,757 - BACOVA_03898 0.68 +0.4 238,822 + BACOVA_03898 0.78 -0.4 238,830 + BACOVA_03898 0.79 -1.4 238,831 - BACOVA_03898 0.79 -1.5 238,835 - BACOVA_03898 0.80 -0.4 238,911 + -0.4 238,920 + -0.4 238,921 - -0.3 238,948 + +0.4 238,949 - +0.2 238,952 - +0.7 238,954 + -0.2 238,954 + -0.8 239,009 + -0.2 239,041 + BACOVA_03899 0.14 -1.8 239,041 + BACOVA_03899 0.14 -0.2 239,185 - BACOVA_03899 0.33 -1.4 239,226 + BACOVA_03899 0.39 -0.5 239,231 - BACOVA_03899 0.39 -0.8 239,231 - BACOVA_03899 0.39 +4.2 239,234 + BACOVA_03899 0.40 +0.7 239,234 + BACOVA_03899 0.40 +1.2 239,235 - BACOVA_03899 0.40 -0.9 239,237 + BACOVA_03899 0.40 -0.6 239,237 + BACOVA_03899 0.40 +2.0
Or see this region's nucleotide sequence