Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03278 and BACOVA_03279 are separated by 52 nucleotides BACOVA_03279 and BACOVA_03280 are separated by 90 nucleotides
BACOVA_03278: BACOVA_03278 - hypothetical protein, at 371,575 to 374,331
_03278
BACOVA_03279: BACOVA_03279 - hypothetical protein, at 374,384 to 375,016
_03279
BACOVA_03280: BACOVA_03280 - TrkA C-terminal domain protein, at 375,107 to 376,771
_03280
Position (kb) 374
375
376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 373.410 kb on + strand, within BACOVA_03278 at 373.410 kb on + strand, within BACOVA_03278 at 373.411 kb on - strand, within BACOVA_03278 at 373.419 kb on + strand, within BACOVA_03278 at 373.419 kb on + strand, within BACOVA_03278 at 373.419 kb on + strand, within BACOVA_03278 at 373.419 kb on + strand, within BACOVA_03278 at 373.420 kb on - strand, within BACOVA_03278 at 373.420 kb on - strand, within BACOVA_03278 at 373.420 kb on - strand, within BACOVA_03278 at 373.420 kb on - strand, within BACOVA_03278 at 373.420 kb on - strand, within BACOVA_03278 at 373.420 kb on - strand, within BACOVA_03278 at 373.437 kb on + strand, within BACOVA_03278 at 373.442 kb on + strand, within BACOVA_03278 at 373.487 kb on - strand, within BACOVA_03278 at 373.495 kb on - strand, within BACOVA_03278 at 373.495 kb on - strand, within BACOVA_03278 at 373.495 kb on - strand, within BACOVA_03278 at 373.540 kb on - strand, within BACOVA_03278 at 373.556 kb on - strand, within BACOVA_03278 at 373.556 kb on - strand, within BACOVA_03278 at 373.557 kb on + strand, within BACOVA_03278 at 373.558 kb on - strand, within BACOVA_03278 at 373.637 kb on + strand, within BACOVA_03278 at 373.686 kb on - strand, within BACOVA_03278 at 373.691 kb on + strand, within BACOVA_03278 at 373.692 kb on - strand, within BACOVA_03278 at 373.693 kb on + strand, within BACOVA_03278 at 373.693 kb on + strand, within BACOVA_03278 at 373.693 kb on + strand, within BACOVA_03278 at 373.693 kb on + strand, within BACOVA_03278 at 373.694 kb on - strand, within BACOVA_03278 at 373.694 kb on - strand, within BACOVA_03278 at 373.694 kb on - strand, within BACOVA_03278 at 373.694 kb on - strand, within BACOVA_03278 at 373.694 kb on - strand, within BACOVA_03278 at 373.728 kb on + strand, within BACOVA_03278 at 373.728 kb on + strand, within BACOVA_03278 at 373.735 kb on - strand, within BACOVA_03278 at 373.754 kb on + strand, within BACOVA_03278 at 373.755 kb on - strand, within BACOVA_03278 at 373.756 kb on + strand, within BACOVA_03278 at 373.757 kb on - strand, within BACOVA_03278 at 373.810 kb on - strand, within BACOVA_03278 at 373.819 kb on - strand, within BACOVA_03278 at 373.839 kb on + strand, within BACOVA_03278 at 373.941 kb on + strand, within BACOVA_03278 at 373.942 kb on - strand, within BACOVA_03278 at 373.967 kb on - strand, within BACOVA_03278 at 373.981 kb on - strand, within BACOVA_03278 at 373.986 kb on + strand, within BACOVA_03278 at 374.005 kb on + strand, within BACOVA_03278 at 374.005 kb on + strand, within BACOVA_03278 at 374.005 kb on + strand, within BACOVA_03278 at 374.005 kb on + strand, within BACOVA_03278 at 374.006 kb on - strand, within BACOVA_03278 at 374.006 kb on - strand, within BACOVA_03278 at 374.006 kb on - strand, within BACOVA_03278 at 374.013 kb on + strand, within BACOVA_03278 at 374.100 kb on + strand at 374.194 kb on + strand at 374.258 kb on - strand at 374.280 kb on - strand at 374.310 kb on + strand at 374.359 kb on - strand at 374.368 kb on + strand at 374.384 kb on - strand at 374.392 kb on + strand at 374.396 kb on + strand at 374.396 kb on + strand at 374.397 kb on - strand at 374.397 kb on - strand at 374.422 kb on - strand at 374.481 kb on - strand, within BACOVA_03279 at 374.497 kb on + strand, within BACOVA_03279 at 374.570 kb on - strand, within BACOVA_03279 at 374.572 kb on + strand, within BACOVA_03279 at 374.572 kb on + strand, within BACOVA_03279 at 374.573 kb on - strand, within BACOVA_03279 at 374.621 kb on - strand, within BACOVA_03279 at 374.629 kb on + strand, within BACOVA_03279 at 374.716 kb on - strand, within BACOVA_03279 at 374.716 kb on - strand, within BACOVA_03279 at 374.716 kb on - strand, within BACOVA_03279 at 374.782 kb on + strand, within BACOVA_03279 at 374.783 kb on - strand, within BACOVA_03279 at 374.821 kb on + strand, within BACOVA_03279 at 374.821 kb on + strand, within BACOVA_03279 at 374.888 kb on + strand, within BACOVA_03279 at 374.889 kb on - strand, within BACOVA_03279 at 374.898 kb on - strand, within BACOVA_03279 at 374.899 kb on + strand, within BACOVA_03279 at 374.900 kb on - strand, within BACOVA_03279 at 374.920 kb on + strand, within BACOVA_03279 at 374.921 kb on - strand, within BACOVA_03279 at 374.921 kb on - strand, within BACOVA_03279 at 375.013 kb on - strand at 375.059 kb on - strand at 375.090 kb on + strand at 375.092 kb on + strand at 375.098 kb on - strand at 375.123 kb on - strand at 375.123 kb on - strand at 375.123 kb on - strand at 375.180 kb on + strand at 375.222 kb on + strand at 375.245 kb on - strand at 375.248 kb on - strand at 375.280 kb on - strand, within BACOVA_03280 at 375.285 kb on - strand, within BACOVA_03280 at 375.289 kb on + strand, within BACOVA_03280 at 375.291 kb on + strand, within BACOVA_03280 at 375.291 kb on + strand, within BACOVA_03280 at 375.291 kb on + strand, within BACOVA_03280 at 375.294 kb on + strand, within BACOVA_03280 at 375.296 kb on + strand, within BACOVA_03280 at 375.296 kb on + strand, within BACOVA_03280 at 375.319 kb on + strand, within BACOVA_03280 at 375.320 kb on - strand, within BACOVA_03280 at 375.323 kb on + strand, within BACOVA_03280 at 375.324 kb on - strand, within BACOVA_03280 at 375.360 kb on + strand, within BACOVA_03280 at 375.360 kb on + strand, within BACOVA_03280 at 375.365 kb on + strand, within BACOVA_03280 at 375.413 kb on + strand, within BACOVA_03280 at 375.413 kb on + strand, within BACOVA_03280 at 375.481 kb on + strand, within BACOVA_03280 at 375.481 kb on + strand, within BACOVA_03280 at 375.483 kb on + strand, within BACOVA_03280 at 375.483 kb on + strand, within BACOVA_03280 at 375.483 kb on + strand, within BACOVA_03280 at 375.502 kb on + strand, within BACOVA_03280 at 375.502 kb on + strand, within BACOVA_03280 at 375.502 kb on + strand, within BACOVA_03280 at 375.502 kb on + strand, within BACOVA_03280 at 375.503 kb on - strand, within BACOVA_03280 at 375.558 kb on - strand, within BACOVA_03280 at 375.563 kb on + strand, within BACOVA_03280 at 375.563 kb on + strand, within BACOVA_03280 at 375.563 kb on + strand, within BACOVA_03280 at 375.564 kb on - strand, within BACOVA_03280 at 375.564 kb on - strand, within BACOVA_03280 at 375.617 kb on + strand, within BACOVA_03280 at 375.626 kb on - strand, within BACOVA_03280 at 375.641 kb on - strand, within BACOVA_03280 at 375.684 kb on - strand, within BACOVA_03280 at 375.720 kb on - strand, within BACOVA_03280 at 375.740 kb on + strand, within BACOVA_03280 at 375.749 kb on + strand, within BACOVA_03280 at 375.749 kb on + strand, within BACOVA_03280 at 375.813 kb on + strand, within BACOVA_03280 at 375.813 kb on + strand, within BACOVA_03280 at 375.813 kb on + strand, within BACOVA_03280 at 375.814 kb on - strand, within BACOVA_03280 at 375.817 kb on + strand, within BACOVA_03280 at 375.818 kb on - strand, within BACOVA_03280 at 375.818 kb on - strand, within BACOVA_03280 at 375.818 kb on - strand, within BACOVA_03280 at 375.818 kb on - strand, within BACOVA_03280 at 375.818 kb on - strand, within BACOVA_03280 at 375.820 kb on + strand, within BACOVA_03280 at 375.832 kb on + strand, within BACOVA_03280 at 375.832 kb on + strand, within BACOVA_03280 at 375.848 kb on - strand, within BACOVA_03280 at 375.878 kb on - strand, within BACOVA_03280 at 375.941 kb on + strand, within BACOVA_03280 at 375.944 kb on + strand, within BACOVA_03280 at 375.980 kb on - strand, within BACOVA_03280 at 375.983 kb on + strand, within BACOVA_03280 at 375.984 kb on - strand, within BACOVA_03280 at 375.998 kb on - strand, within BACOVA_03280 at 376.001 kb on - strand, within BACOVA_03280 at 376.001 kb on - strand, within BACOVA_03280
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C) remove 373,410 + BACOVA_03278 0.67 -0.6 373,410 + BACOVA_03278 0.67 +0.3 373,411 - BACOVA_03278 0.67 +0.1 373,419 + BACOVA_03278 0.67 +0.2 373,419 + BACOVA_03278 0.67 -0.7 373,419 + BACOVA_03278 0.67 +2.6 373,419 + BACOVA_03278 0.67 +0.3 373,420 - BACOVA_03278 0.67 -1.7 373,420 - BACOVA_03278 0.67 +1.6 373,420 - BACOVA_03278 0.67 +1.5 373,420 - BACOVA_03278 0.67 -0.4 373,420 - BACOVA_03278 0.67 -1.0 373,420 - BACOVA_03278 0.67 -0.9 373,437 + BACOVA_03278 0.68 -0.7 373,442 + BACOVA_03278 0.68 -0.7 373,487 - BACOVA_03278 0.69 +1.4 373,495 - BACOVA_03278 0.70 -0.3 373,495 - BACOVA_03278 0.70 -2.0 373,495 - BACOVA_03278 0.70 -1.0 373,540 - BACOVA_03278 0.71 -2.2 373,556 - BACOVA_03278 0.72 +0.7 373,556 - BACOVA_03278 0.72 -0.4 373,557 + BACOVA_03278 0.72 +0.4 373,558 - BACOVA_03278 0.72 -1.7 373,637 + BACOVA_03278 0.75 -0.3 373,686 - BACOVA_03278 0.77 +0.4 373,691 + BACOVA_03278 0.77 +0.5 373,692 - BACOVA_03278 0.77 +2.1 373,693 + BACOVA_03278 0.77 +0.8 373,693 + BACOVA_03278 0.77 +0.9 373,693 + BACOVA_03278 0.77 -0.6 373,693 + BACOVA_03278 0.77 -0.3 373,694 - BACOVA_03278 0.77 -0.5 373,694 - BACOVA_03278 0.77 +0.7 373,694 - BACOVA_03278 0.77 +0.4 373,694 - BACOVA_03278 0.77 -0.9 373,694 - BACOVA_03278 0.77 +2.1 373,728 + BACOVA_03278 0.78 +0.1 373,728 + BACOVA_03278 0.78 -1.1 373,735 - BACOVA_03278 0.78 +0.6 373,754 + BACOVA_03278 0.79 +0.3 373,755 - BACOVA_03278 0.79 +1.8 373,756 + BACOVA_03278 0.79 -2.2 373,757 - BACOVA_03278 0.79 -1.9 373,810 - BACOVA_03278 0.81 -1.7 373,819 - BACOVA_03278 0.81 +1.9 373,839 + BACOVA_03278 0.82 -1.2 373,941 + BACOVA_03278 0.86 -0.5 373,942 - BACOVA_03278 0.86 -1.6 373,967 - BACOVA_03278 0.87 +0.2 373,981 - BACOVA_03278 0.87 +0.4 373,986 + BACOVA_03278 0.87 +0.8 374,005 + BACOVA_03278 0.88 -0.2 374,005 + BACOVA_03278 0.88 +2.1 374,005 + BACOVA_03278 0.88 +0.4 374,005 + BACOVA_03278 0.88 -1.1 374,006 - BACOVA_03278 0.88 -1.0 374,006 - BACOVA_03278 0.88 -1.2 374,006 - BACOVA_03278 0.88 -0.6 374,013 + BACOVA_03278 0.88 -1.4 374,100 + -2.6 374,194 + -1.1 374,258 - -0.6 374,280 - -0.1 374,310 + +0.6 374,359 - -1.0 374,368 + -0.6 374,384 - +0.3 374,392 + +1.5 374,396 + -0.9 374,396 + -1.2 374,397 - +0.4 374,397 - -0.6 374,422 - -0.9 374,481 - BACOVA_03279 0.15 +2.3 374,497 + BACOVA_03279 0.18 -0.7 374,570 - BACOVA_03279 0.29 -0.7 374,572 + BACOVA_03279 0.30 +2.4 374,572 + BACOVA_03279 0.30 -0.4 374,573 - BACOVA_03279 0.30 -1.1 374,621 - BACOVA_03279 0.37 +0.6 374,629 + BACOVA_03279 0.39 -1.5 374,716 - BACOVA_03279 0.52 +1.2 374,716 - BACOVA_03279 0.52 -0.2 374,716 - BACOVA_03279 0.52 +1.3 374,782 + BACOVA_03279 0.63 +0.5 374,783 - BACOVA_03279 0.63 +1.5 374,821 + BACOVA_03279 0.69 -1.2 374,821 + BACOVA_03279 0.69 -0.6 374,888 + BACOVA_03279 0.80 +0.0 374,889 - BACOVA_03279 0.80 -0.1 374,898 - BACOVA_03279 0.81 -0.9 374,899 + BACOVA_03279 0.81 +0.7 374,900 - BACOVA_03279 0.82 -0.3 374,920 + BACOVA_03279 0.85 +1.0 374,921 - BACOVA_03279 0.85 -0.9 374,921 - BACOVA_03279 0.85 +0.5 375,013 - -2.8 375,059 - -4.1 375,090 + -1.7 375,092 + -1.2 375,098 - +0.6 375,123 - -2.6 375,123 - -0.6 375,123 - -1.2 375,180 + -0.8 375,222 + -0.3 375,245 - -0.6 375,248 - -2.6 375,280 - BACOVA_03280 0.10 -1.1 375,285 - BACOVA_03280 0.11 +0.4 375,289 + BACOVA_03280 0.11 -0.7 375,291 + BACOVA_03280 0.11 -1.5 375,291 + BACOVA_03280 0.11 -0.8 375,291 + BACOVA_03280 0.11 -0.5 375,294 + BACOVA_03280 0.11 -0.5 375,296 + BACOVA_03280 0.11 -1.2 375,296 + BACOVA_03280 0.11 +1.0 375,319 + BACOVA_03280 0.13 -0.2 375,320 - BACOVA_03280 0.13 -0.6 375,323 + BACOVA_03280 0.13 -0.2 375,324 - BACOVA_03280 0.13 -0.8 375,360 + BACOVA_03280 0.15 -0.7 375,360 + BACOVA_03280 0.15 -4.6 375,365 + BACOVA_03280 0.15 -1.6 375,413 + BACOVA_03280 0.18 -1.4 375,413 + BACOVA_03280 0.18 -1.0 375,481 + BACOVA_03280 0.22 +1.6 375,481 + BACOVA_03280 0.22 +1.2 375,483 + BACOVA_03280 0.23 -1.5 375,483 + BACOVA_03280 0.23 -0.2 375,483 + BACOVA_03280 0.23 -0.5 375,502 + BACOVA_03280 0.24 -0.6 375,502 + BACOVA_03280 0.24 +0.3 375,502 + BACOVA_03280 0.24 -1.6 375,502 + BACOVA_03280 0.24 +0.1 375,503 - BACOVA_03280 0.24 +1.3 375,558 - BACOVA_03280 0.27 -0.8 375,563 + BACOVA_03280 0.27 +1.3 375,563 + BACOVA_03280 0.27 +1.2 375,563 + BACOVA_03280 0.27 -0.3 375,564 - BACOVA_03280 0.27 -0.7 375,564 - BACOVA_03280 0.27 -1.2 375,617 + BACOVA_03280 0.31 -0.5 375,626 - BACOVA_03280 0.31 +0.9 375,641 - BACOVA_03280 0.32 -1.4 375,684 - BACOVA_03280 0.35 -0.5 375,720 - BACOVA_03280 0.37 -1.8 375,740 + BACOVA_03280 0.38 +0.8 375,749 + BACOVA_03280 0.39 +1.2 375,749 + BACOVA_03280 0.39 -1.1 375,813 + BACOVA_03280 0.42 -0.1 375,813 + BACOVA_03280 0.42 -2.0 375,813 + BACOVA_03280 0.42 +1.2 375,814 - BACOVA_03280 0.42 -0.8 375,817 + BACOVA_03280 0.43 -0.9 375,818 - BACOVA_03280 0.43 -0.7 375,818 - BACOVA_03280 0.43 +0.6 375,818 - BACOVA_03280 0.43 -0.9 375,818 - BACOVA_03280 0.43 -0.1 375,818 - BACOVA_03280 0.43 -1.9 375,820 + BACOVA_03280 0.43 +1.4 375,832 + BACOVA_03280 0.44 -1.1 375,832 + BACOVA_03280 0.44 -0.7 375,848 - BACOVA_03280 0.45 +0.2 375,878 - BACOVA_03280 0.46 -1.1 375,941 + BACOVA_03280 0.50 -0.7 375,944 + BACOVA_03280 0.50 -1.5 375,980 - BACOVA_03280 0.52 -1.5 375,983 + BACOVA_03280 0.53 -0.6 375,984 - BACOVA_03280 0.53 +0.3 375,998 - BACOVA_03280 0.54 +1.5 376,001 - BACOVA_03280 0.54 -0.0 376,001 - BACOVA_03280 0.54 -1.3
Or see this region's nucleotide sequence