Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02457

Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02455 and BACOVA_02456 are separated by 162 nucleotidesBACOVA_02456 and BACOVA_02457 are separated by 51 nucleotidesBACOVA_02457 and BACOVA_02458 are separated by 80 nucleotides BACOVA_02455: BACOVA_02455 - site-specific recombinase, phage integrase family, at 217,865 to 218,818 _02455 BACOVA_02456: BACOVA_02456 - hypothetical protein, at 218,981 to 219,121 _02456 BACOVA_02457: BACOVA_02457 - transcription termination/antitermination factor NusG, at 219,173 to 219,748 _02457 BACOVA_02458: BACOVA_02458 - polysaccharide biosynthesis protein, at 219,829 to 221,364 _02458 Position (kb) 219 220Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 219.597 kb on + strand, within BACOVA_02457at 219.630 kb on + strand, within BACOVA_02457at 219.644 kb on - strand, within BACOVA_02457at 219.644 kb on - strand, within BACOVA_02457at 219.648 kb on + strand, within BACOVA_02457at 219.648 kb on + strand, within BACOVA_02457at 219.648 kb on + strand, within BACOVA_02457at 219.655 kb on + strand, within BACOVA_02457at 219.662 kb on - strand, within BACOVA_02457at 219.683 kb on - strand, within BACOVA_02457at 219.719 kb on + strandat 219.768 kb on + strandat 219.768 kb on + strandat 219.769 kb on - strandat 219.776 kb on - strandat 219.776 kb on - strandat 219.776 kb on - strandat 219.803 kb on - strandat 219.807 kb on + strandat 219.807 kb on + strandat 219.808 kb on - strandat 219.808 kb on - strandat 219.814 kb on - strandat 219.814 kb on - strandat 219.815 kb on + strandat 219.816 kb on - strandat 219.870 kb on + strandat 219.891 kb on + strandat 219.892 kb on - strandat 219.917 kb on + strandat 219.918 kb on - strandat 219.920 kb on - strandat 219.922 kb on - strandat 219.936 kb on - strandat 219.939 kb on - strandat 219.969 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.971 kb on - strandat 219.973 kb on - strandat 219.981 kb on - strandat 219.981 kb on - strandat 219.981 kb on - strandat 219.993 kb on - strand, within BACOVA_02458at 220.119 kb on - strand, within BACOVA_02458at 220.137 kb on - strand, within BACOVA_02458at 220.146 kb on - strand, within BACOVA_02458at 220.189 kb on - strand, within BACOVA_02458at 220.275 kb on + strand, within BACOVA_02458at 220.285 kb on - strand, within BACOVA_02458at 220.290 kb on - strand, within BACOVA_02458at 220.319 kb on - strand, within BACOVA_02458at 220.319 kb on - strand, within BACOVA_02458at 220.320 kb on + strand, within BACOVA_02458at 220.321 kb on - strand, within BACOVA_02458at 220.321 kb on - strand, within BACOVA_02458at 220.327 kb on - strand, within BACOVA_02458at 220.327 kb on - strand, within BACOVA_02458at 220.328 kb on + strand, within BACOVA_02458at 220.339 kb on - strand, within BACOVA_02458at 220.339 kb on - strand, within BACOVA_02458at 220.350 kb on + strand, within BACOVA_02458at 220.351 kb on - strand, within BACOVA_02458at 220.354 kb on - strand, within BACOVA_02458at 220.374 kb on - strand, within BACOVA_02458at 220.380 kb on + strand, within BACOVA_02458at 220.422 kb on - strand, within BACOVA_02458at 220.422 kb on - strand, within BACOVA_02458at 220.441 kb on - strand, within BACOVA_02458at 220.441 kb on - strand, within BACOVA_02458at 220.445 kb on - strand, within BACOVA_02458at 220.454 kb on - strand, within BACOVA_02458at 220.620 kb on - strand, within BACOVA_02458at 220.642 kb on - strand, within BACOVA_02458at 220.642 kb on - strand, within BACOVA_02458at 220.642 kb on - strand, within BACOVA_02458at 220.695 kb on - strand, within BACOVA_02458

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C)
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219,597 + BACOVA_02457 0.74 -0.0
219,630 + BACOVA_02457 0.79 -0.6
219,644 - BACOVA_02457 0.82 +0.9
219,644 - BACOVA_02457 0.82 +1.8
219,648 + BACOVA_02457 0.82 -0.9
219,648 + BACOVA_02457 0.82 +1.7
219,648 + BACOVA_02457 0.82 +2.3
219,655 + BACOVA_02457 0.84 +0.1
219,662 - BACOVA_02457 0.85 -0.8
219,683 - BACOVA_02457 0.89 -0.3
219,719 + +0.1
219,768 + +0.5
219,768 + -0.3
219,769 - +2.5
219,776 - +2.1
219,776 - -1.4
219,776 - +3.1
219,803 - +0.5
219,807 + -2.3
219,807 + +0.2
219,808 - +2.7
219,808 - -2.0
219,814 - +1.1
219,814 - +0.3
219,815 + +0.1
219,816 - +1.9
219,870 + -0.9
219,891 + +0.9
219,892 - +1.7
219,917 + -1.3
219,918 - +3.7
219,920 - -0.0
219,922 - +1.9
219,936 - +2.6
219,939 - -2.0
219,969 - +2.1
219,971 - +2.7
219,971 - -1.9
219,971 - +2.3
219,971 - +3.7
219,971 - +1.3
219,973 - +3.3
219,981 - +1.4
219,981 - +1.7
219,981 - +1.5
219,993 - BACOVA_02458 0.11 +2.2
220,119 - BACOVA_02458 0.19 -0.0
220,137 - BACOVA_02458 0.20 +4.2
220,146 - BACOVA_02458 0.21 -1.6
220,189 - BACOVA_02458 0.23 +1.3
220,275 + BACOVA_02458 0.29 -0.7
220,285 - BACOVA_02458 0.30 -1.6
220,290 - BACOVA_02458 0.30 +1.5
220,319 - BACOVA_02458 0.32 +2.5
220,319 - BACOVA_02458 0.32 +2.5
220,320 + BACOVA_02458 0.32 -0.3
220,321 - BACOVA_02458 0.32 -1.0
220,321 - BACOVA_02458 0.32 +2.0
220,327 - BACOVA_02458 0.32 +2.7
220,327 - BACOVA_02458 0.32 +1.5
220,328 + BACOVA_02458 0.32 -0.3
220,339 - BACOVA_02458 0.33 +1.4
220,339 - BACOVA_02458 0.33 +2.4
220,350 + BACOVA_02458 0.34 +2.9
220,351 - BACOVA_02458 0.34 +1.5
220,354 - BACOVA_02458 0.34 +4.5
220,374 - BACOVA_02458 0.35 +2.3
220,380 + BACOVA_02458 0.36 +0.6
220,422 - BACOVA_02458 0.39 +2.1
220,422 - BACOVA_02458 0.39 +3.0
220,441 - BACOVA_02458 0.40 -1.3
220,441 - BACOVA_02458 0.40 +0.1
220,445 - BACOVA_02458 0.40 -0.1
220,454 - BACOVA_02458 0.41 +2.0
220,620 - BACOVA_02458 0.51 +3.3
220,642 - BACOVA_02458 0.53 +1.2
220,642 - BACOVA_02458 0.53 -0.9
220,642 - BACOVA_02458 0.53 +0.6
220,695 - BACOVA_02458 0.56 +2.1

Or see this region's nucleotide sequence