Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01540 and BACOVA_01541 are separated by 41 nucleotides BACOVA_01541 and BACOVA_01542 are separated by 31 nucleotides
BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660
_01540
BACOVA_01541: BACOVA_01541 - DNA-binding protein HU, at 38,702 to 38,968
_01541
BACOVA_01542: BACOVA_01542 - hypothetical protein, at 39,000 to 41,870
_01542
Position (kb) 38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 37.748 kb on + strand, within BACOVA_01540 at 37.749 kb on - strand, within BACOVA_01540 at 37.769 kb on + strand, within BACOVA_01540 at 37.770 kb on - strand, within BACOVA_01540 at 37.925 kb on + strand, within BACOVA_01540 at 37.925 kb on + strand, within BACOVA_01540 at 37.946 kb on - strand, within BACOVA_01540 at 37.999 kb on - strand, within BACOVA_01540 at 38.004 kb on + strand, within BACOVA_01540 at 38.004 kb on + strand, within BACOVA_01540 at 38.295 kb on + strand, within BACOVA_01540 at 38.314 kb on + strand, within BACOVA_01540 at 38.341 kb on + strand, within BACOVA_01540 at 38.454 kb on - strand, within BACOVA_01540 at 38.494 kb on + strand, within BACOVA_01540 at 38.494 kb on + strand, within BACOVA_01540 at 38.494 kb on + strand, within BACOVA_01540 at 38.494 kb on + strand, within BACOVA_01540 at 38.494 kb on + strand, within BACOVA_01540 at 38.499 kb on - strand, within BACOVA_01540 at 38.523 kb on - strand, within BACOVA_01540 at 38.525 kb on - strand, within BACOVA_01540 at 38.571 kb on - strand at 38.571 kb on - strand at 38.625 kb on + strand at 38.625 kb on + strand at 38.626 kb on - strand at 38.628 kb on + strand at 38.708 kb on + strand at 38.857 kb on + strand, within BACOVA_01541 at 38.857 kb on + strand, within BACOVA_01541 at 38.895 kb on - strand, within BACOVA_01541 at 38.895 kb on - strand, within BACOVA_01541 at 38.905 kb on + strand, within BACOVA_01541 at 38.969 kb on - strand at 38.992 kb on - strand at 38.992 kb on - strand at 38.993 kb on + strand at 38.994 kb on - strand at 38.994 kb on - strand at 38.994 kb on - strand at 38.995 kb on + strand at 39.001 kb on + strand at 39.080 kb on - strand at 39.087 kb on - strand at 39.105 kb on - strand at 39.114 kb on + strand at 39.114 kb on + strand at 39.115 kb on - strand at 39.119 kb on + strand at 39.120 kb on - strand at 39.120 kb on - strand at 39.120 kb on - strand at 39.158 kb on + strand at 39.169 kb on - strand at 39.170 kb on + strand at 39.170 kb on + strand at 39.170 kb on + strand at 39.170 kb on + strand at 39.170 kb on + strand at 39.171 kb on - strand at 39.172 kb on + strand at 39.172 kb on + strand at 39.173 kb on - strand at 39.191 kb on - strand at 39.226 kb on + strand at 39.227 kb on - strand at 39.281 kb on + strand at 39.336 kb on - strand, within BACOVA_01542 at 39.365 kb on + strand, within BACOVA_01542 at 39.367 kb on + strand, within BACOVA_01542 at 39.368 kb on - strand, within BACOVA_01542 at 39.368 kb on - strand, within BACOVA_01542 at 39.368 kb on - strand, within BACOVA_01542 at 39.372 kb on + strand, within BACOVA_01542 at 39.373 kb on - strand, within BACOVA_01542 at 39.375 kb on + strand, within BACOVA_01542 at 39.375 kb on + strand, within BACOVA_01542 at 39.377 kb on + strand, within BACOVA_01542 at 39.378 kb on - strand, within BACOVA_01542 at 39.387 kb on + strand, within BACOVA_01542 at 39.401 kb on - strand, within BACOVA_01542 at 39.401 kb on - strand, within BACOVA_01542 at 39.402 kb on + strand, within BACOVA_01542 at 39.402 kb on + strand, within BACOVA_01542 at 39.403 kb on - strand, within BACOVA_01542 at 39.403 kb on - strand, within BACOVA_01542 at 39.403 kb on - strand, within BACOVA_01542 at 39.403 kb on - strand, within BACOVA_01542 at 39.418 kb on - strand, within BACOVA_01542 at 39.422 kb on + strand, within BACOVA_01542 at 39.423 kb on - strand, within BACOVA_01542 at 39.423 kb on - strand, within BACOVA_01542 at 39.445 kb on + strand, within BACOVA_01542 at 39.446 kb on - strand, within BACOVA_01542 at 39.446 kb on - strand, within BACOVA_01542 at 39.446 kb on - strand, within BACOVA_01542 at 39.465 kb on + strand, within BACOVA_01542 at 39.466 kb on - strand, within BACOVA_01542 at 39.467 kb on + strand, within BACOVA_01542 at 39.468 kb on - strand, within BACOVA_01542 at 39.479 kb on + strand, within BACOVA_01542 at 39.497 kb on + strand, within BACOVA_01542 at 39.511 kb on + strand, within BACOVA_01542 at 39.511 kb on + strand, within BACOVA_01542 at 39.534 kb on - strand, within BACOVA_01542 at 39.535 kb on + strand, within BACOVA_01542 at 39.535 kb on + strand, within BACOVA_01542 at 39.536 kb on - strand, within BACOVA_01542 at 39.537 kb on - strand, within BACOVA_01542 at 39.554 kb on + strand, within BACOVA_01542 at 39.555 kb on - strand, within BACOVA_01542 at 39.560 kb on + strand, within BACOVA_01542 at 39.561 kb on - strand, within BACOVA_01542 at 39.564 kb on - strand, within BACOVA_01542 at 39.582 kb on + strand, within BACOVA_01542 at 39.605 kb on + strand, within BACOVA_01542 at 39.658 kb on + strand, within BACOVA_01542 at 39.659 kb on - strand, within BACOVA_01542 at 39.690 kb on + strand, within BACOVA_01542 at 39.698 kb on + strand, within BACOVA_01542 at 39.698 kb on + strand, within BACOVA_01542 at 39.698 kb on + strand, within BACOVA_01542 at 39.699 kb on - strand, within BACOVA_01542 at 39.699 kb on - strand, within BACOVA_01542 at 39.699 kb on - strand, within BACOVA_01542 at 39.701 kb on - strand, within BACOVA_01542 at 39.701 kb on - strand, within BACOVA_01542 at 39.705 kb on - strand, within BACOVA_01542 at 39.751 kb on + strand, within BACOVA_01542 at 39.785 kb on + strand, within BACOVA_01542 at 39.789 kb on - strand, within BACOVA_01542 at 39.838 kb on + strand, within BACOVA_01542 at 39.876 kb on - strand, within BACOVA_01542 at 39.899 kb on + strand, within BACOVA_01542 at 39.962 kb on + strand, within BACOVA_01542
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C) remove 37,748 + BACOVA_01540 0.22 -0.6 37,749 - BACOVA_01540 0.22 +1.4 37,769 + BACOVA_01540 0.24 +0.2 37,770 - BACOVA_01540 0.24 +0.7 37,925 + BACOVA_01540 0.37 +0.4 37,925 + BACOVA_01540 0.37 +0.9 37,946 - BACOVA_01540 0.39 -0.7 37,999 - BACOVA_01540 0.43 +1.0 38,004 + BACOVA_01540 0.44 -0.8 38,004 + BACOVA_01540 0.44 +1.8 38,295 + BACOVA_01540 0.69 +1.1 38,314 + BACOVA_01540 0.70 +0.5 38,341 + BACOVA_01540 0.73 +0.9 38,454 - BACOVA_01540 0.82 -0.3 38,494 + BACOVA_01540 0.86 +0.0 38,494 + BACOVA_01540 0.86 +0.7 38,494 + BACOVA_01540 0.86 +0.2 38,494 + BACOVA_01540 0.86 -2.0 38,494 + BACOVA_01540 0.86 +0.1 38,499 - BACOVA_01540 0.86 +0.8 38,523 - BACOVA_01540 0.88 -0.6 38,525 - BACOVA_01540 0.88 +1.0 38,571 - -2.5 38,571 - -0.1 38,625 + -1.0 38,625 + -0.2 38,626 - +1.3 38,628 + +0.8 38,708 + +1.2 38,857 + BACOVA_01541 0.58 +1.8 38,857 + BACOVA_01541 0.58 +0.2 38,895 - BACOVA_01541 0.72 +2.9 38,895 - BACOVA_01541 0.72 +2.1 38,905 + BACOVA_01541 0.76 -1.0 38,969 - +2.2 38,992 - +2.6 38,992 - +2.3 38,993 + -0.3 38,994 - +2.0 38,994 - +2.5 38,994 - +1.0 38,995 + +0.4 39,001 + +1.1 39,080 - +2.1 39,087 - +2.8 39,105 - +1.0 39,114 + +0.8 39,114 + -1.7 39,115 - -0.8 39,119 + +1.1 39,120 - +2.8 39,120 - +2.8 39,120 - +2.2 39,158 + -1.4 39,169 - +2.4 39,170 + +1.0 39,170 + +0.8 39,170 + -0.5 39,170 + -1.9 39,170 + +1.5 39,171 - +2.2 39,172 + +0.3 39,172 + +0.4 39,173 - +2.1 39,191 - +2.4 39,226 + -0.2 39,227 - +0.8 39,281 + +0.7 39,336 - BACOVA_01542 0.12 +2.3 39,365 + BACOVA_01542 0.13 -0.1 39,367 + BACOVA_01542 0.13 -0.2 39,368 - BACOVA_01542 0.13 +1.0 39,368 - BACOVA_01542 0.13 +1.9 39,368 - BACOVA_01542 0.13 +1.8 39,372 + BACOVA_01542 0.13 +1.2 39,373 - BACOVA_01542 0.13 +3.1 39,375 + BACOVA_01542 0.13 -0.3 39,375 + BACOVA_01542 0.13 +0.0 39,377 + BACOVA_01542 0.13 +1.5 39,378 - BACOVA_01542 0.13 +3.5 39,387 + BACOVA_01542 0.13 +0.2 39,401 - BACOVA_01542 0.14 +3.8 39,401 - BACOVA_01542 0.14 +0.7 39,402 + BACOVA_01542 0.14 +0.3 39,402 + BACOVA_01542 0.14 -1.4 39,403 - BACOVA_01542 0.14 +2.7 39,403 - BACOVA_01542 0.14 +2.1 39,403 - BACOVA_01542 0.14 +1.4 39,403 - BACOVA_01542 0.14 +1.6 39,418 - BACOVA_01542 0.15 +2.0 39,422 + BACOVA_01542 0.15 -1.8 39,423 - BACOVA_01542 0.15 +1.7 39,423 - BACOVA_01542 0.15 +3.3 39,445 + BACOVA_01542 0.15 -3.5 39,446 - BACOVA_01542 0.16 +2.3 39,446 - BACOVA_01542 0.16 +1.8 39,446 - BACOVA_01542 0.16 -1.5 39,465 + BACOVA_01542 0.16 -0.3 39,466 - BACOVA_01542 0.16 +4.7 39,467 + BACOVA_01542 0.16 +0.3 39,468 - BACOVA_01542 0.16 +2.2 39,479 + BACOVA_01542 0.17 +1.3 39,497 + BACOVA_01542 0.17 +0.4 39,511 + BACOVA_01542 0.18 +0.0 39,511 + BACOVA_01542 0.18 -0.6 39,534 - BACOVA_01542 0.19 +0.2 39,535 + BACOVA_01542 0.19 +0.0 39,535 + BACOVA_01542 0.19 -0.7 39,536 - BACOVA_01542 0.19 +1.4 39,537 - BACOVA_01542 0.19 +1.7 39,554 + BACOVA_01542 0.19 -0.8 39,555 - BACOVA_01542 0.19 +3.0 39,560 + BACOVA_01542 0.20 +2.0 39,561 - BACOVA_01542 0.20 +2.3 39,564 - BACOVA_01542 0.20 +4.3 39,582 + BACOVA_01542 0.20 +0.6 39,605 + BACOVA_01542 0.21 -2.5 39,658 + BACOVA_01542 0.23 -0.0 39,659 - BACOVA_01542 0.23 +2.1 39,690 + BACOVA_01542 0.24 +1.1 39,698 + BACOVA_01542 0.24 -1.1 39,698 + BACOVA_01542 0.24 -0.3 39,698 + BACOVA_01542 0.24 -0.3 39,699 - BACOVA_01542 0.24 +2.2 39,699 - BACOVA_01542 0.24 +2.2 39,699 - BACOVA_01542 0.24 +1.7 39,701 - BACOVA_01542 0.24 +1.5 39,701 - BACOVA_01542 0.24 +2.9 39,705 - BACOVA_01542 0.25 +1.0 39,751 + BACOVA_01542 0.26 -0.1 39,785 + BACOVA_01542 0.27 -0.3 39,789 - BACOVA_01542 0.27 +1.6 39,838 + BACOVA_01542 0.29 +0.3 39,876 - BACOVA_01542 0.31 +1.9 39,899 + BACOVA_01542 0.31 +0.3 39,962 + BACOVA_01542 0.34 -0.7
Or see this region's nucleotide sequence