Experiment: Dextran, Mw ~200,000 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00584 and BACOVA_00585 are separated by 10 nucleotides BACOVA_00585 and BACOVA_00586 overlap by 26 nucleotides BACOVA_00586 and BACOVA_00587 are separated by 20 nucleotides BACOVA_00587 and BACOVA_00588 are separated by 21 nucleotides
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
BACOVA_00585: BACOVA_00585 - RyR domain protein, at 19,745 to 20,050
_00585
BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306
_00586
BACOVA_00587: BACOVA_00587 - hypothetical protein, at 23,327 to 23,995
_00587
BACOVA_00588: BACOVA_00588 - hypothetical protein, at 24,017 to 25,633
_00588
Position (kb) 20
21
22
23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584 at 19.674 kb on + strand at 19.687 kb on + strand at 19.738 kb on - strand at 19.739 kb on + strand at 19.739 kb on + strand at 19.740 kb on - strand at 19.740 kb on - strand at 19.766 kb on + strand at 19.820 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 20.049 kb on - strand at 20.076 kb on - strand at 20.076 kb on - strand at 20.122 kb on + strand at 20.122 kb on + strand at 20.136 kb on + strand at 20.186 kb on + strand at 20.303 kb on + strand at 20.339 kb on + strand at 20.397 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.499 kb on + strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.566 kb on - strand, within BACOVA_00586 at 20.571 kb on + strand, within BACOVA_00586 at 20.611 kb on - strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.636 kb on - strand, within BACOVA_00586 at 20.640 kb on + strand, within BACOVA_00586 at 20.684 kb on + strand, within BACOVA_00586 at 20.694 kb on - strand, within BACOVA_00586 at 20.736 kb on + strand, within BACOVA_00586 at 20.816 kb on - strand, within BACOVA_00586 at 20.866 kb on + strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.931 kb on - strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.998 kb on - strand, within BACOVA_00586 at 21.096 kb on + strand, within BACOVA_00586 at 21.111 kb on + strand, within BACOVA_00586 at 21.159 kb on + strand, within BACOVA_00586 at 21.160 kb on - strand, within BACOVA_00586 at 21.194 kb on - strand, within BACOVA_00586 at 21.194 kb on - strand, within BACOVA_00586 at 21.194 kb on - strand, within BACOVA_00586 at 21.209 kb on + strand, within BACOVA_00586 at 21.245 kb on - strand, within BACOVA_00586 at 21.245 kb on - strand, within BACOVA_00586 at 21.245 kb on - strand, within BACOVA_00586 at 21.266 kb on + strand, within BACOVA_00586 at 21.355 kb on + strand, within BACOVA_00586 at 21.355 kb on + strand, within BACOVA_00586 at 21.426 kb on - strand, within BACOVA_00586 at 21.426 kb on - strand, within BACOVA_00586 at 21.426 kb on - strand, within BACOVA_00586 at 21.429 kb on - strand, within BACOVA_00586 at 21.491 kb on + strand, within BACOVA_00586 at 21.527 kb on + strand, within BACOVA_00586 at 21.528 kb on - strand, within BACOVA_00586 at 21.528 kb on - strand, within BACOVA_00586 at 21.639 kb on - strand, within BACOVA_00586 at 21.639 kb on - strand, within BACOVA_00586 at 21.640 kb on + strand, within BACOVA_00586 at 21.640 kb on + strand, within BACOVA_00586 at 21.641 kb on - strand, within BACOVA_00586 at 21.673 kb on + strand, within BACOVA_00586 at 21.674 kb on - strand, within BACOVA_00586 at 21.676 kb on + strand, within BACOVA_00586 at 21.677 kb on - strand, within BACOVA_00586 at 21.677 kb on - strand, within BACOVA_00586 at 21.677 kb on - strand, within BACOVA_00586 at 21.709 kb on + strand, within BACOVA_00586 at 21.709 kb on + strand, within BACOVA_00586 at 21.774 kb on + strand, within BACOVA_00586 at 21.978 kb on + strand, within BACOVA_00586 at 22.016 kb on + strand, within BACOVA_00586 at 22.026 kb on - strand, within BACOVA_00586 at 22.026 kb on - strand, within BACOVA_00586 at 22.133 kb on - strand, within BACOVA_00586 at 22.165 kb on + strand, within BACOVA_00586 at 22.190 kb on + strand, within BACOVA_00586 at 22.190 kb on + strand, within BACOVA_00586 at 22.190 kb on + strand, within BACOVA_00586 at 22.207 kb on + strand, within BACOVA_00586 at 22.208 kb on - strand, within BACOVA_00586 at 22.244 kb on - strand, within BACOVA_00586 at 22.244 kb on - strand, within BACOVA_00586 at 22.360 kb on + strand, within BACOVA_00586 at 22.361 kb on - strand, within BACOVA_00586 at 22.372 kb on - strand, within BACOVA_00586 at 22.397 kb on + strand, within BACOVA_00586 at 22.446 kb on - strand, within BACOVA_00586 at 22.454 kb on + strand, within BACOVA_00586 at 22.454 kb on + strand, within BACOVA_00586 at 22.454 kb on + strand, within BACOVA_00586 at 22.455 kb on - strand, within BACOVA_00586 at 22.455 kb on - strand, within BACOVA_00586 at 22.455 kb on - strand, within BACOVA_00586 at 22.458 kb on + strand, within BACOVA_00586 at 22.459 kb on - strand, within BACOVA_00586 at 22.529 kb on + strand, within BACOVA_00586 at 22.555 kb on + strand, within BACOVA_00586 at 22.560 kb on + strand, within BACOVA_00586 at 22.561 kb on - strand, within BACOVA_00586 at 22.591 kb on + strand, within BACOVA_00586 at 22.670 kb on - strand, within BACOVA_00586 at 22.681 kb on - strand, within BACOVA_00586 at 22.689 kb on - strand, within BACOVA_00586 at 22.702 kb on + strand, within BACOVA_00586 at 22.703 kb on - strand, within BACOVA_00586 at 22.703 kb on - strand, within BACOVA_00586 at 22.703 kb on - strand, within BACOVA_00586 at 22.706 kb on - strand, within BACOVA_00586 at 22.760 kb on - strand, within BACOVA_00586 at 22.770 kb on - strand, within BACOVA_00586 at 22.779 kb on + strand, within BACOVA_00586 at 22.791 kb on + strand, within BACOVA_00586 at 22.792 kb on - strand, within BACOVA_00586 at 22.827 kb on + strand, within BACOVA_00586 at 22.827 kb on + strand, within BACOVA_00586 at 22.827 kb on + strand, within BACOVA_00586 at 22.832 kb on - strand, within BACOVA_00586 at 22.850 kb on + strand, within BACOVA_00586 at 22.857 kb on + strand, within BACOVA_00586 at 22.932 kb on - strand, within BACOVA_00586 at 22.932 kb on - strand, within BACOVA_00586 at 22.936 kb on + strand, within BACOVA_00586 at 22.991 kb on - strand at 22.998 kb on - strand at 23.047 kb on + strand at 23.048 kb on - strand at 23.053 kb on - strand at 23.146 kb on + strand at 23.147 kb on - strand at 23.148 kb on + strand at 23.148 kb on + strand at 23.148 kb on + strand at 23.149 kb on - strand at 23.149 kb on - strand at 23.175 kb on - strand at 23.198 kb on + strand at 23.199 kb on - strand at 23.229 kb on + strand at 23.229 kb on + strand at 23.229 kb on + strand at 23.229 kb on + strand at 23.257 kb on + strand at 23.272 kb on - strand at 23.272 kb on - strand at 23.283 kb on + strand at 23.289 kb on + strand at 23.289 kb on + strand at 23.306 kb on + strand at 23.308 kb on + strand at 23.309 kb on - strand at 23.309 kb on - strand at 23.312 kb on - strand at 23.334 kb on - strand at 23.368 kb on + strand at 23.455 kb on + strand, within BACOVA_00587 at 23.615 kb on + strand, within BACOVA_00587 at 23.615 kb on + strand, within BACOVA_00587 at 23.615 kb on + strand, within BACOVA_00587 at 23.616 kb on - strand, within BACOVA_00587 at 23.616 kb on - strand, within BACOVA_00587 at 23.622 kb on - strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.671 kb on - strand, within BACOVA_00587 at 23.671 kb on - strand, within BACOVA_00587 at 23.671 kb on - strand, within BACOVA_00587 at 23.727 kb on + strand, within BACOVA_00587 at 24.025 kb on + strand at 24.031 kb on + strand at 24.031 kb on + strand at 24.032 kb on - strand at 24.067 kb on + strand at 24.072 kb on + strand at 24.072 kb on + strand at 24.072 kb on + strand at 24.073 kb on - strand at 24.081 kb on - strand at 24.081 kb on - strand at 24.086 kb on - strand at 24.141 kb on - strand at 24.204 kb on + strand, within BACOVA_00588 at 24.205 kb on - strand, within BACOVA_00588 at 24.223 kb on + strand, within BACOVA_00588 at 24.224 kb on - strand, within BACOVA_00588 at 24.224 kb on - strand, within BACOVA_00588 at 24.255 kb on + strand, within BACOVA_00588 at 24.257 kb on + strand, within BACOVA_00588 at 24.258 kb on - strand, within BACOVA_00588
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/mL (C) remove 19,057 - BACOVA_00584 0.38 -0.6 19,071 - BACOVA_00584 0.39 -1.7 19,071 - BACOVA_00584 0.39 -2.1 19,113 + BACOVA_00584 0.43 -1.3 19,114 - BACOVA_00584 0.43 -1.3 19,134 + BACOVA_00584 0.45 +0.3 19,135 - BACOVA_00584 0.45 -0.6 19,148 + BACOVA_00584 0.46 -0.4 19,154 - BACOVA_00584 0.47 -0.1 19,167 - BACOVA_00584 0.48 -0.5 19,179 - BACOVA_00584 0.49 -0.6 19,252 - BACOVA_00584 0.56 -0.3 19,326 + BACOVA_00584 0.62 +0.5 19,505 - BACOVA_00584 0.79 +1.6 19,530 + BACOVA_00584 0.81 +0.6 19,542 + BACOVA_00584 0.82 -1.0 19,570 + BACOVA_00584 0.85 +0.7 19,572 + BACOVA_00584 0.85 +0.6 19,573 - BACOVA_00584 0.85 -0.9 19,573 - BACOVA_00584 0.85 -0.9 19,576 - BACOVA_00584 0.85 -0.9 19,674 + +1.2 19,687 + +1.3 19,738 - +1.3 19,739 + -0.8 19,739 + -0.6 19,740 - -0.8 19,740 - -0.9 19,766 + +0.6 19,820 + BACOVA_00585 0.25 -0.8 19,892 + BACOVA_00585 0.48 -0.1 19,892 + BACOVA_00585 0.48 -0.6 20,049 - -0.7 20,076 - +0.4 20,076 - -0.7 20,122 + +1.7 20,122 + -0.1 20,136 + -1.3 20,186 + +0.5 20,303 + +0.1 20,339 + -0.4 20,397 - BACOVA_00586 0.11 -0.6 20,496 - BACOVA_00586 0.14 -0.3 20,496 - BACOVA_00586 0.14 +0.1 20,496 - BACOVA_00586 0.14 -0.1 20,499 + BACOVA_00586 0.14 -0.0 20,500 - BACOVA_00586 0.14 -2.0 20,500 - BACOVA_00586 0.14 +0.1 20,566 - BACOVA_00586 0.16 -0.6 20,571 + BACOVA_00586 0.17 +1.6 20,611 - BACOVA_00586 0.18 +0.8 20,619 + BACOVA_00586 0.18 -1.0 20,619 + BACOVA_00586 0.18 -0.3 20,619 + BACOVA_00586 0.18 -0.0 20,634 - BACOVA_00586 0.19 +1.1 20,634 - BACOVA_00586 0.19 -0.3 20,635 + BACOVA_00586 0.19 +0.6 20,635 + BACOVA_00586 0.19 +0.9 20,636 - BACOVA_00586 0.19 +0.6 20,640 + BACOVA_00586 0.19 -0.6 20,684 + BACOVA_00586 0.20 -1.6 20,694 - BACOVA_00586 0.20 +0.6 20,736 + BACOVA_00586 0.22 +0.3 20,816 - BACOVA_00586 0.24 +0.7 20,866 + BACOVA_00586 0.26 -0.6 20,867 - BACOVA_00586 0.26 -0.4 20,867 - BACOVA_00586 0.26 -0.4 20,867 - BACOVA_00586 0.26 -0.6 20,931 - BACOVA_00586 0.28 -0.5 20,932 + BACOVA_00586 0.28 -0.1 20,932 + BACOVA_00586 0.28 -2.1 20,932 + BACOVA_00586 0.28 -0.8 20,932 + BACOVA_00586 0.28 +0.0 20,933 - BACOVA_00586 0.28 +2.2 20,933 - BACOVA_00586 0.28 -2.8 20,933 - BACOVA_00586 0.28 -0.5 20,998 - BACOVA_00586 0.30 +0.2 21,096 + BACOVA_00586 0.33 +1.4 21,111 + BACOVA_00586 0.33 -0.3 21,159 + BACOVA_00586 0.35 +1.2 21,160 - BACOVA_00586 0.35 -0.7 21,194 - BACOVA_00586 0.36 -1.4 21,194 - BACOVA_00586 0.36 +0.1 21,194 - BACOVA_00586 0.36 -0.1 21,209 + BACOVA_00586 0.36 -0.2 21,245 - BACOVA_00586 0.37 +0.8 21,245 - BACOVA_00586 0.37 +0.4 21,245 - BACOVA_00586 0.37 -1.1 21,266 + BACOVA_00586 0.38 +1.3 21,355 + BACOVA_00586 0.41 -2.3 21,355 + BACOVA_00586 0.41 -2.1 21,426 - BACOVA_00586 0.43 +1.2 21,426 - BACOVA_00586 0.43 -0.3 21,426 - BACOVA_00586 0.43 -0.5 21,429 - BACOVA_00586 0.43 +0.3 21,491 + BACOVA_00586 0.45 +1.0 21,527 + BACOVA_00586 0.46 -0.4 21,528 - BACOVA_00586 0.46 -0.5 21,528 - BACOVA_00586 0.46 +0.3 21,639 - BACOVA_00586 0.49 +0.4 21,639 - BACOVA_00586 0.49 +0.2 21,640 + BACOVA_00586 0.49 -3.0 21,640 + BACOVA_00586 0.49 +1.1 21,641 - BACOVA_00586 0.49 +0.6 21,673 + BACOVA_00586 0.50 -0.2 21,674 - BACOVA_00586 0.50 -0.1 21,676 + BACOVA_00586 0.50 -1.3 21,677 - BACOVA_00586 0.50 -0.3 21,677 - BACOVA_00586 0.50 +0.3 21,677 - BACOVA_00586 0.50 +1.3 21,709 + BACOVA_00586 0.51 -0.2 21,709 + BACOVA_00586 0.51 +0.1 21,774 + BACOVA_00586 0.53 -1.8 21,978 + BACOVA_00586 0.60 +1.0 22,016 + BACOVA_00586 0.61 -0.1 22,026 - BACOVA_00586 0.61 -1.0 22,026 - BACOVA_00586 0.61 -2.5 22,133 - BACOVA_00586 0.64 -0.5 22,165 + BACOVA_00586 0.65 +0.7 22,190 + BACOVA_00586 0.66 -1.1 22,190 + BACOVA_00586 0.66 -0.6 22,190 + BACOVA_00586 0.66 +1.3 22,207 + BACOVA_00586 0.66 +0.3 22,208 - BACOVA_00586 0.67 +0.9 22,244 - BACOVA_00586 0.68 +0.1 22,244 - BACOVA_00586 0.68 +0.3 22,360 + BACOVA_00586 0.71 -0.5 22,361 - BACOVA_00586 0.71 +0.5 22,372 - BACOVA_00586 0.72 -0.3 22,397 + BACOVA_00586 0.72 +1.4 22,446 - BACOVA_00586 0.74 +1.1 22,454 + BACOVA_00586 0.74 -2.4 22,454 + BACOVA_00586 0.74 -1.7 22,454 + BACOVA_00586 0.74 -1.8 22,455 - BACOVA_00586 0.74 +0.2 22,455 - BACOVA_00586 0.74 +1.9 22,455 - BACOVA_00586 0.74 -0.7 22,458 + BACOVA_00586 0.74 +0.6 22,459 - BACOVA_00586 0.74 -0.3 22,529 + BACOVA_00586 0.76 +1.0 22,555 + BACOVA_00586 0.77 -0.2 22,560 + BACOVA_00586 0.77 -0.8 22,561 - BACOVA_00586 0.77 -0.2 22,591 + BACOVA_00586 0.78 -1.1 22,670 - BACOVA_00586 0.81 -0.4 22,681 - BACOVA_00586 0.81 -1.2 22,689 - BACOVA_00586 0.81 -0.1 22,702 + BACOVA_00586 0.82 +1.3 22,703 - BACOVA_00586 0.82 -1.3 22,703 - BACOVA_00586 0.82 +0.2 22,703 - BACOVA_00586 0.82 -0.4 22,706 - BACOVA_00586 0.82 -0.3 22,760 - BACOVA_00586 0.83 -1.9 22,770 - BACOVA_00586 0.84 +1.1 22,779 + BACOVA_00586 0.84 -3.1 22,791 + BACOVA_00586 0.84 +0.0 22,792 - BACOVA_00586 0.84 +0.9 22,827 + BACOVA_00586 0.85 +0.1 22,827 + BACOVA_00586 0.85 +0.1 22,827 + BACOVA_00586 0.85 -0.3 22,832 - BACOVA_00586 0.86 +1.0 22,850 + BACOVA_00586 0.86 +1.3 22,857 + BACOVA_00586 0.86 +0.4 22,932 - BACOVA_00586 0.89 +0.2 22,932 - BACOVA_00586 0.89 +1.3 22,936 + BACOVA_00586 0.89 +1.1 22,991 - +0.2 22,998 - +0.1 23,047 + -1.7 23,048 - -0.4 23,053 - +0.9 23,146 + -0.7 23,147 - -2.0 23,148 + -1.6 23,148 + -1.1 23,148 + +0.7 23,149 - -0.1 23,149 - -2.0 23,175 - +1.5 23,198 + +2.2 23,199 - +0.3 23,229 + -0.3 23,229 + +0.7 23,229 + -0.6 23,229 + -2.9 23,257 + -0.5 23,272 - +0.1 23,272 - +0.7 23,283 + +1.6 23,289 + +1.0 23,289 + -0.4 23,306 + -0.3 23,308 + -0.5 23,309 - -1.5 23,309 - -0.7 23,312 - -0.4 23,334 - -0.7 23,368 + -1.1 23,455 + BACOVA_00587 0.19 -0.8 23,615 + BACOVA_00587 0.43 -0.0 23,615 + BACOVA_00587 0.43 -1.1 23,615 + BACOVA_00587 0.43 +0.7 23,616 - BACOVA_00587 0.43 -0.4 23,616 - BACOVA_00587 0.43 -1.9 23,622 - BACOVA_00587 0.44 -0.6 23,670 + BACOVA_00587 0.51 -2.1 23,670 + BACOVA_00587 0.51 -0.9 23,670 + BACOVA_00587 0.51 +0.8 23,670 + BACOVA_00587 0.51 -1.1 23,671 - BACOVA_00587 0.51 -1.8 23,671 - BACOVA_00587 0.51 +1.0 23,671 - BACOVA_00587 0.51 -0.9 23,727 + BACOVA_00587 0.60 +1.8 24,025 + -0.6 24,031 + +2.7 24,031 + +0.3 24,032 - -0.3 24,067 + +0.3 24,072 + -0.9 24,072 + -0.6 24,072 + -0.1 24,073 - +1.5 24,081 - -0.7 24,081 - -1.3 24,086 - -0.6 24,141 - -1.1 24,204 + BACOVA_00588 0.12 -0.9 24,205 - BACOVA_00588 0.12 -0.1 24,223 + BACOVA_00588 0.13 -0.3 24,224 - BACOVA_00588 0.13 +0.0 24,224 - BACOVA_00588 0.13 +0.6 24,255 + BACOVA_00588 0.15 -0.6 24,257 + BACOVA_00588 0.15 -1.4 24,258 - BACOVA_00588 0.15 -1.8
Or see this region's nucleotide sequence