Strain Fitness in Erwinia amylovora T8 around OLJFJH_10850

Experiment: FE-KB1-T3 (Control KB Rep 1 Time 3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10845 and OLJFJH_10850 are separated by 127 nucleotidesOLJFJH_10850 and OLJFJH_10855 are separated by 43 nucleotides OLJFJH_10845: OLJFJH_10845 - two-component sensor histidine kinase, at 2,264,279 to 2,265,643 _10845 OLJFJH_10850: OLJFJH_10850 - PTS glucose transporter subunit IIA, at 2,265,771 to 2,266,274 _10850 OLJFJH_10855: OLJFJH_10855 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 2,266,318 to 2,268,045 _10855 Position (kb) 2265 2266 2267Strain fitness (log2 ratio) -3 -2 -1 0 1at 2264.989 kb on + strand, within OLJFJH_10845at 2264.989 kb on + strand, within OLJFJH_10845at 2264.990 kb on - strand, within OLJFJH_10845at 2264.990 kb on - strand, within OLJFJH_10845at 2264.991 kb on + strand, within OLJFJH_10845at 2264.991 kb on + strand, within OLJFJH_10845at 2264.992 kb on - strand, within OLJFJH_10845at 2264.992 kb on - strand, within OLJFJH_10845at 2264.992 kb on - strand, within OLJFJH_10845at 2264.992 kb on - strand, within OLJFJH_10845at 2265.003 kb on + strand, within OLJFJH_10845at 2265.003 kb on + strand, within OLJFJH_10845at 2265.177 kb on - strand, within OLJFJH_10845at 2265.177 kb on - strand, within OLJFJH_10845at 2265.177 kb on - strand, within OLJFJH_10845at 2265.186 kb on + strand, within OLJFJH_10845at 2265.186 kb on + strand, within OLJFJH_10845at 2265.282 kb on - strand, within OLJFJH_10845at 2265.282 kb on - strand, within OLJFJH_10845at 2265.282 kb on - strand, within OLJFJH_10845at 2265.547 kb on - strandat 2265.739 kb on + strandat 2265.828 kb on - strand, within OLJFJH_10850at 2265.828 kb on - strand, within OLJFJH_10850at 2266.106 kb on + strand, within OLJFJH_10850at 2266.124 kb on + strand, within OLJFJH_10850at 2266.125 kb on - strand, within OLJFJH_10850at 2266.158 kb on + strand, within OLJFJH_10850at 2266.244 kb on + strandat 2266.285 kb on + strandat 2266.286 kb on - strandat 2266.293 kb on - strandat 2266.432 kb on - strandat 2266.507 kb on + strand, within OLJFJH_10855at 2266.508 kb on - strand, within OLJFJH_10855at 2266.508 kb on - strand, within OLJFJH_10855at 2266.512 kb on + strand, within OLJFJH_10855at 2266.513 kb on - strand, within OLJFJH_10855at 2266.513 kb on - strand, within OLJFJH_10855at 2266.604 kb on - strand, within OLJFJH_10855at 2266.617 kb on + strand, within OLJFJH_10855at 2266.618 kb on - strand, within OLJFJH_10855at 2266.626 kb on - strand, within OLJFJH_10855at 2266.670 kb on + strand, within OLJFJH_10855at 2266.670 kb on + strand, within OLJFJH_10855at 2266.671 kb on - strand, within OLJFJH_10855at 2266.671 kb on - strand, within OLJFJH_10855at 2266.795 kb on - strand, within OLJFJH_10855at 2267.016 kb on - strand, within OLJFJH_10855at 2267.028 kb on + strand, within OLJFJH_10855at 2267.047 kb on - strand, within OLJFJH_10855at 2267.094 kb on + strand, within OLJFJH_10855at 2267.095 kb on - strand, within OLJFJH_10855at 2267.097 kb on - strand, within OLJFJH_10855at 2267.097 kb on - strand, within OLJFJH_10855

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB1-T3 (Control KB Rep 1 Time 3)
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2,264,989 + OLJFJH_10845 0.52 +0.1
2,264,989 + OLJFJH_10845 0.52 -0.3
2,264,990 - OLJFJH_10845 0.52 -0.5
2,264,990 - OLJFJH_10845 0.52 -0.3
2,264,991 + OLJFJH_10845 0.52 -0.3
2,264,991 + OLJFJH_10845 0.52 -1.0
2,264,992 - OLJFJH_10845 0.52 +0.3
2,264,992 - OLJFJH_10845 0.52 +0.9
2,264,992 - OLJFJH_10845 0.52 +0.9
2,264,992 - OLJFJH_10845 0.52 -0.2
2,265,003 + OLJFJH_10845 0.53 +0.6
2,265,003 + OLJFJH_10845 0.53 +0.3
2,265,177 - OLJFJH_10845 0.66 -0.1
2,265,177 - OLJFJH_10845 0.66 +0.4
2,265,177 - OLJFJH_10845 0.66 -1.4
2,265,186 + OLJFJH_10845 0.66 +0.1
2,265,186 + OLJFJH_10845 0.66 +0.2
2,265,282 - OLJFJH_10845 0.73 +0.1
2,265,282 - OLJFJH_10845 0.73 +0.6
2,265,282 - OLJFJH_10845 0.73 -0.1
2,265,547 - +0.0
2,265,739 + -0.1
2,265,828 - OLJFJH_10850 0.11 -1.9
2,265,828 - OLJFJH_10850 0.11 -1.8
2,266,106 + OLJFJH_10850 0.66 -2.6
2,266,124 + OLJFJH_10850 0.70 -1.1
2,266,125 - OLJFJH_10850 0.70 -3.1
2,266,158 + OLJFJH_10850 0.77 -0.1
2,266,244 + -2.1
2,266,285 + -1.5
2,266,286 - -2.4
2,266,293 - -1.3
2,266,432 - -1.2
2,266,507 + OLJFJH_10855 0.11 -0.9
2,266,508 - OLJFJH_10855 0.11 -2.1
2,266,508 - OLJFJH_10855 0.11 -1.4
2,266,512 + OLJFJH_10855 0.11 -3.2
2,266,513 - OLJFJH_10855 0.11 -1.2
2,266,513 - OLJFJH_10855 0.11 -1.0
2,266,604 - OLJFJH_10855 0.17 -1.8
2,266,617 + OLJFJH_10855 0.17 -2.6
2,266,618 - OLJFJH_10855 0.17 -1.6
2,266,626 - OLJFJH_10855 0.18 -0.1
2,266,670 + OLJFJH_10855 0.20 -2.8
2,266,670 + OLJFJH_10855 0.20 -2.1
2,266,671 - OLJFJH_10855 0.20 -1.9
2,266,671 - OLJFJH_10855 0.20 -1.8
2,266,795 - OLJFJH_10855 0.28 -0.6
2,267,016 - OLJFJH_10855 0.40 -1.4
2,267,028 + OLJFJH_10855 0.41 -1.9
2,267,047 - OLJFJH_10855 0.42 -1.6
2,267,094 + OLJFJH_10855 0.45 -2.7
2,267,095 - OLJFJH_10855 0.45 -2.3
2,267,097 - OLJFJH_10855 0.45 -1.8
2,267,097 - OLJFJH_10855 0.45 -2.1

Or see this region's nucleotide sequence