Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_13400 and OKGIIK_13405 overlap by 30 nucleotides OKGIIK_13405 and OKGIIK_13410 are separated by 47 nucleotides OKGIIK_13410 and OKGIIK_13415 are separated by 228 nucleotides OKGIIK_13415 and OKGIIK_13420 are separated by 31 nucleotides
OKGIIK_13400: OKGIIK_13400 - hypothetical protein, at 2,894,764 to 2,895,375
_13400
OKGIIK_13405: OKGIIK_13405 - IS3 family transposase, at 2,895,346 to 2,896,164
_13405
OKGIIK_13410: OKGIIK_13410 - Mobile element protein, at 2,896,212 to 2,896,499
_13410
OKGIIK_13415: OKGIIK_13415 - SseB family protein, at 2,896,728 to 2,897,267
_13415
OKGIIK_13420: OKGIIK_13420 - DUF45 domain-containing protein, at 2,897,299 to 2,897,769
_13420
Position (kb)
2896
2897 Strain fitness (log2 ratio)
-2
-1
0
1 at 2895.280 kb on + strand, within OKGIIK_13400 at 2895.280 kb on + strand, within OKGIIK_13400 at 2895.280 kb on + strand, within OKGIIK_13400 at 2895.281 kb on - strand, within OKGIIK_13400 at 2895.281 kb on - strand, within OKGIIK_13400 at 2895.374 kb on - strand at 2895.374 kb on - strand at 2895.374 kb on - strand at 2896.531 kb on + strand at 2896.531 kb on + strand at 2896.531 kb on + strand at 2896.531 kb on + strand at 2896.602 kb on + strand at 2896.647 kb on + strand at 2896.647 kb on + strand at 2896.647 kb on + strand at 2896.648 kb on - strand at 2896.657 kb on + strand at 2896.657 kb on + strand at 2896.657 kb on + strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.706 kb on - strand at 2896.706 kb on - strand at 2896.707 kb on - strand at 2896.848 kb on - strand, within OKGIIK_13415 at 2896.848 kb on - strand, within OKGIIK_13415 at 2896.939 kb on + strand, within OKGIIK_13415 at 2896.939 kb on + strand, within OKGIIK_13415 at 2896.940 kb on - strand, within OKGIIK_13415 at 2896.994 kb on - strand, within OKGIIK_13415 at 2897.035 kb on + strand, within OKGIIK_13415 at 2897.035 kb on + strand, within OKGIIK_13415 at 2897.035 kb on + strand, within OKGIIK_13415 at 2897.280 kb on - strand at 2897.280 kb on - strand at 2897.280 kb on - strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.301 kb on - strand at 2897.301 kb on - strand at 2897.303 kb on - strand at 2897.303 kb on - strand at 2897.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x remove 2,895,280 + OKGIIK_13400 0.84 +0.9 2,895,280 + OKGIIK_13400 0.84 -0.2 2,895,280 + OKGIIK_13400 0.84 -0.6 2,895,281 - OKGIIK_13400 0.84 -0.6 2,895,281 - OKGIIK_13400 0.84 -0.5 2,895,374 - -0.2 2,895,374 - +0.9 2,895,374 - +1.0 2,896,531 + -1.7 2,896,531 + -0.1 2,896,531 + -0.1 2,896,531 + +1.1 2,896,602 + -0.4 2,896,647 + +1.0 2,896,647 + -0.2 2,896,647 + +0.2 2,896,648 - -1.7 2,896,657 + -2.1 2,896,657 + -0.3 2,896,657 + +0.4 2,896,658 - -0.0 2,896,658 - +0.2 2,896,658 - +0.4 2,896,658 - -1.5 2,896,658 - +0.0 2,896,706 - -0.5 2,896,706 - +0.7 2,896,707 - -0.4 2,896,848 - OKGIIK_13415 0.22 +0.1 2,896,848 - OKGIIK_13415 0.22 -2.4 2,896,939 + OKGIIK_13415 0.39 +0.9 2,896,939 + OKGIIK_13415 0.39 +0.0 2,896,940 - OKGIIK_13415 0.39 +1.4 2,896,994 - OKGIIK_13415 0.49 -0.5 2,897,035 + OKGIIK_13415 0.57 +0.7 2,897,035 + OKGIIK_13415 0.57 -1.7 2,897,035 + OKGIIK_13415 0.57 -0.9 2,897,280 - +0.4 2,897,280 - -1.7 2,897,280 - +0.5 2,897,300 + +0.4 2,897,300 + -0.6 2,897,300 + +0.8 2,897,300 + -1.1 2,897,300 + -0.5 2,897,301 - -0.8 2,897,301 - -0.5 2,897,303 - -1.2 2,897,303 - +1.1 2,897,312 - +0.8
Or see this region's nucleotide sequence