Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12570

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinB and OKGIIK_12565 are separated by 157 nucleotidesOKGIIK_12565 and OKGIIK_12570 are separated by 165 nucleotidesOKGIIK_12570 and rpoE are separated by 122 nucleotidesrpoE and OKGIIK_12580 overlap by 4 nucleotides OKGIIK_12560: dinB - DNA polymerase IV, at 2,706,712 to 2,707,758 dinB OKGIIK_12565: OKGIIK_12565 - hypothetical protein, at 2,707,916 to 2,708,203 _12565 OKGIIK_12570: OKGIIK_12570 - DUF6249 domain-containing protein, at 2,708,369 to 2,708,695 _12570 OKGIIK_12575: rpoE - RNA polymerase subunit sigma-24, at 2,708,818 to 2,709,399 rpoE OKGIIK_12580: OKGIIK_12580 - hypothetical protein, at 2,709,396 to 2,709,875 _12580 Position (kb) 2708 2709Strain fitness (log2 ratio) -3 -2 -1 0 1at 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.723 kb on + strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.724 kb on - strandat 2707.828 kb on + strandat 2707.829 kb on - strandat 2707.829 kb on - strandat 2707.829 kb on - strandat 2707.829 kb on - strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.896 kb on + strandat 2707.897 kb on - strandat 2707.897 kb on - strandat 2707.897 kb on - strandat 2707.897 kb on - strandat 2707.897 kb on - strandat 2707.897 kb on - strandat 2707.897 kb on - strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.900 kb on + strandat 2707.901 kb on - strandat 2707.901 kb on - strandat 2707.901 kb on - strandat 2708.105 kb on - strand, within OKGIIK_12565at 2708.105 kb on - strand, within OKGIIK_12565at 2708.105 kb on - strand, within OKGIIK_12565at 2708.105 kb on - strand, within OKGIIK_12565at 2708.105 kb on - strand, within OKGIIK_12565at 2708.105 kb on - strand, within OKGIIK_12565at 2708.371 kb on - strandat 2708.371 kb on - strandat 2708.631 kb on - strand, within OKGIIK_12570at 2708.631 kb on - strand, within OKGIIK_12570at 2708.747 kb on + strandat 2708.747 kb on + strandat 2708.748 kb on - strandat 2708.748 kb on - strandat 2708.748 kb on - strandat 2708.748 kb on - strandat 2708.748 kb on - strandat 2708.805 kb on + strandat 2709.017 kb on - strand, within rpoEat 2709.023 kb on - strand, within rpoEat 2709.061 kb on + strand, within rpoEat 2709.062 kb on - strand, within rpoEat 2709.062 kb on - strand, within rpoEat 2709.062 kb on - strand, within rpoEat 2709.134 kb on - strand, within rpoEat 2709.134 kb on - strand, within rpoEat 2709.134 kb on - strand, within rpoEat 2709.261 kb on - strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.262 kb on + strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.263 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoEat 2709.266 kb on - strand, within rpoE

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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2,707,723 + -0.2
2,707,723 + +1.5
2,707,723 + +0.4
2,707,723 + -0.4
2,707,723 + -0.2
2,707,723 + +0.6
2,707,723 + -0.7
2,707,723 + +0.3
2,707,723 + -0.4
2,707,723 + -0.6
2,707,724 - +0.1
2,707,724 - -0.3
2,707,724 - +0.7
2,707,724 - +0.6
2,707,724 - +0.5
2,707,724 - -0.1
2,707,724 - +0.1
2,707,724 - +0.1
2,707,724 - -0.2
2,707,724 - -2.2
2,707,724 - -0.1
2,707,828 + +0.7
2,707,829 - -0.6
2,707,829 - -3.5
2,707,829 - -0.5
2,707,829 - -1.7
2,707,896 + -0.4
2,707,896 + -0.9
2,707,896 + +0.4
2,707,896 + -1.9
2,707,896 + -2.4
2,707,896 + -0.1
2,707,896 + +1.5
2,707,896 + -0.4
2,707,896 + +0.2
2,707,896 + -1.7
2,707,897 - +0.7
2,707,897 - -1.3
2,707,897 - +1.1
2,707,897 - -0.4
2,707,897 - -0.7
2,707,897 - +0.4
2,707,897 - -0.7
2,707,900 + +1.1
2,707,900 + -0.7
2,707,900 + -0.2
2,707,900 + +0.2
2,707,900 + -0.7
2,707,900 + -0.6
2,707,900 + -2.0
2,707,900 + -1.2
2,707,901 - -0.2
2,707,901 - +0.2
2,707,901 - -0.2
2,708,105 - OKGIIK_12565 0.66 -1.9
2,708,105 - OKGIIK_12565 0.66 +0.8
2,708,105 - OKGIIK_12565 0.66 +0.7
2,708,105 - OKGIIK_12565 0.66 +0.7
2,708,105 - OKGIIK_12565 0.66 +0.5
2,708,105 - OKGIIK_12565 0.66 -0.4
2,708,371 - +1.0
2,708,371 - -0.4
2,708,631 - OKGIIK_12570 0.80 -3.1
2,708,631 - OKGIIK_12570 0.80 +1.1
2,708,747 + -1.7
2,708,747 + -0.9
2,708,748 - -1.4
2,708,748 - +0.9
2,708,748 - +0.2
2,708,748 - -0.0
2,708,748 - -0.9
2,708,805 + +0.9
2,709,017 - rpoE OKGIIK_12575 0.34 +0.4
2,709,023 - rpoE OKGIIK_12575 0.35 -1.2
2,709,061 + rpoE OKGIIK_12575 0.42 -1.9
2,709,062 - rpoE OKGIIK_12575 0.42 -0.1
2,709,062 - rpoE OKGIIK_12575 0.42 +0.4
2,709,062 - rpoE OKGIIK_12575 0.42 +0.7
2,709,134 - rpoE OKGIIK_12575 0.54 -0.2
2,709,134 - rpoE OKGIIK_12575 0.54 +0.2
2,709,134 - rpoE OKGIIK_12575 0.54 +0.6
2,709,261 - rpoE OKGIIK_12575 0.76 -1.3
2,709,262 + rpoE OKGIIK_12575 0.76 +0.0
2,709,262 + rpoE OKGIIK_12575 0.76 +0.4
2,709,262 + rpoE OKGIIK_12575 0.76 +1.4
2,709,262 + rpoE OKGIIK_12575 0.76 -1.7
2,709,262 + rpoE OKGIIK_12575 0.76 -0.9
2,709,262 + rpoE OKGIIK_12575 0.76 +0.9
2,709,262 + rpoE OKGIIK_12575 0.76 +0.1
2,709,262 + rpoE OKGIIK_12575 0.76 -0.7
2,709,262 + rpoE OKGIIK_12575 0.76 -0.2
2,709,262 + rpoE OKGIIK_12575 0.76 -0.7
2,709,262 + rpoE OKGIIK_12575 0.76 +0.1
2,709,263 - rpoE OKGIIK_12575 0.76 -1.2
2,709,263 - rpoE OKGIIK_12575 0.76 -0.2
2,709,263 - rpoE OKGIIK_12575 0.76 +0.7
2,709,263 - rpoE OKGIIK_12575 0.76 -1.0
2,709,263 - rpoE OKGIIK_12575 0.76 +0.5
2,709,263 - rpoE OKGIIK_12575 0.76 -0.1
2,709,263 - rpoE OKGIIK_12575 0.76 +1.1
2,709,263 - rpoE OKGIIK_12575 0.76 -1.2
2,709,266 - rpoE OKGIIK_12575 0.77 -1.3
2,709,266 - rpoE OKGIIK_12575 0.77 +0.2
2,709,266 - rpoE OKGIIK_12575 0.77 +0.1
2,709,266 - rpoE OKGIIK_12575 0.77 -0.2
2,709,266 - rpoE OKGIIK_12575 0.77 -0.4
2,709,266 - rpoE OKGIIK_12575 0.77 -1.2
2,709,266 - rpoE OKGIIK_12575 0.77 +1.1
2,709,266 - rpoE OKGIIK_12575 0.77 +1.1
2,709,266 - rpoE OKGIIK_12575 0.77 +0.1

Or see this region's nucleotide sequence