Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09185

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntubiE and metH1 are separated by 33 nucleotidesmetH1 and OKGIIK_09190 are separated by 61 nucleotides OKGIIK_09180: ubiE - ArsR family transcriptional regulator, at 1,983,247 to 1,984,176 ubiE OKGIIK_09185: metH1 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 1,984,210 to 1,985,301 metH1 OKGIIK_09190: OKGIIK_09190 - Methionine synthase, at 1,985,363 to 1,988,071 _09190 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -3 -2 -1 0 1at 1983.213 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.215 kb on + strandat 1983.216 kb on - strandat 1983.216 kb on - strandat 1983.383 kb on + strand, within ubiEat 1983.451 kb on + strand, within ubiEat 1983.451 kb on + strand, within ubiEat 1983.452 kb on - strand, within ubiEat 1983.452 kb on - strand, within ubiEat 1983.452 kb on - strand, within ubiEat 1983.452 kb on - strand, within ubiEat 1983.452 kb on - strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.454 kb on + strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.455 kb on - strand, within ubiEat 1983.628 kb on + strand, within ubiEat 1983.628 kb on + strand, within ubiEat 1983.628 kb on + strand, within ubiEat 1983.628 kb on + strand, within ubiEat 1983.629 kb on - strand, within ubiEat 1983.910 kb on + strand, within ubiEat 1983.910 kb on + strand, within ubiEat 1983.910 kb on + strand, within ubiEat 1983.910 kb on + strand, within ubiEat 1983.910 kb on + strand, within ubiEat 1983.910 kb on + strand, within ubiEat 1984.215 kb on + strandat 1984.215 kb on + strandat 1984.215 kb on + strandat 1984.215 kb on + strandat 1984.215 kb on + strandat 1984.215 kb on + strandat 1984.215 kb on + strandat 1984.216 kb on - strandat 1984.216 kb on - strandat 1984.486 kb on + strand, within metH1at 1984.486 kb on + strand, within metH1at 1984.486 kb on + strand, within metH1at 1984.486 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.555 kb on + strand, within metH1at 1984.556 kb on - strand, within metH1at 1984.556 kb on - strand, within metH1at 1984.556 kb on - strand, within metH1at 1984.576 kb on + strand, within metH1at 1984.577 kb on - strand, within metH1at 1984.577 kb on - strand, within metH1at 1984.577 kb on - strand, within metH1at 1984.762 kb on + strand, within metH1at 1984.762 kb on + strand, within metH1at 1984.762 kb on + strand, within metH1at 1984.762 kb on + strand, within metH1at 1984.762 kb on + strand, within metH1at 1984.762 kb on + strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.763 kb on - strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.969 kb on + strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.970 kb on - strand, within metH1at 1984.971 kb on - strand, within metH1at 1984.972 kb on + strand, within metH1at 1984.972 kb on + strand, within metH1at 1984.972 kb on + strand, within metH1at 1984.973 kb on - strand, within metH1at 1984.973 kb on - strand, within metH1at 1985.077 kb on + strand, within metH1at 1985.077 kb on + strand, within metH1at 1985.077 kb on + strand, within metH1at 1985.077 kb on + strand, within metH1at 1985.078 kb on - strand, within metH1at 1985.078 kb on - strand, within metH1at 1985.078 kb on - strand, within metH1at 1985.078 kb on - strand, within metH1at 1985.078 kb on - strand, within metH1at 1985.125 kb on + strand, within metH1at 1985.125 kb on + strand, within metH1at 1985.125 kb on + strand, within metH1at 1985.125 kb on + strand, within metH1at 1985.214 kb on + strandat 1985.214 kb on + strandat 1985.215 kb on - strandat 1985.215 kb on - strandat 1985.384 kb on - strandat 1985.514 kb on - strandat 1985.802 kb on - strand, within OKGIIK_09190at 1985.802 kb on - strand, within OKGIIK_09190at 1985.802 kb on - strand, within OKGIIK_09190at 1985.802 kb on - strand, within OKGIIK_09190at 1985.802 kb on - strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.987 kb on + strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1985.988 kb on - strand, within OKGIIK_09190at 1986.128 kb on + strand, within OKGIIK_09190at 1986.128 kb on + strand, within OKGIIK_09190at 1986.129 kb on - strand, within OKGIIK_09190at 1986.129 kb on - strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.287 kb on + strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190at 1986.288 kb on - strand, within OKGIIK_09190

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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1,983,213 + -1.1
1,983,215 + -1.4
1,983,215 + +0.6
1,983,215 + -1.0
1,983,215 + -1.3
1,983,215 + -1.0
1,983,215 + -0.4
1,983,215 + +1.0
1,983,215 + -1.1
1,983,215 + -0.1
1,983,215 + +0.0
1,983,215 + -1.5
1,983,215 + -1.4
1,983,215 + +0.0
1,983,215 + +0.2
1,983,215 + -1.0
1,983,215 + -0.7
1,983,216 - +0.5
1,983,216 - -1.5
1,983,383 + ubiE OKGIIK_09180 0.15 -0.5
1,983,451 + ubiE OKGIIK_09180 0.22 -0.5
1,983,451 + ubiE OKGIIK_09180 0.22 +0.0
1,983,452 - ubiE OKGIIK_09180 0.22 -1.8
1,983,452 - ubiE OKGIIK_09180 0.22 -0.2
1,983,452 - ubiE OKGIIK_09180 0.22 -1.8
1,983,452 - ubiE OKGIIK_09180 0.22 -1.3
1,983,452 - ubiE OKGIIK_09180 0.22 -1.5
1,983,454 + ubiE OKGIIK_09180 0.22 -0.3
1,983,454 + ubiE OKGIIK_09180 0.22 -0.4
1,983,454 + ubiE OKGIIK_09180 0.22 -1.3
1,983,454 + ubiE OKGIIK_09180 0.22 +0.0
1,983,454 + ubiE OKGIIK_09180 0.22 -1.0
1,983,454 + ubiE OKGIIK_09180 0.22 -0.8
1,983,454 + ubiE OKGIIK_09180 0.22 -0.1
1,983,454 + ubiE OKGIIK_09180 0.22 -1.8
1,983,454 + ubiE OKGIIK_09180 0.22 +0.0
1,983,454 + ubiE OKGIIK_09180 0.22 -1.0
1,983,454 + ubiE OKGIIK_09180 0.22 -1.0
1,983,454 + ubiE OKGIIK_09180 0.22 -0.6
1,983,455 - ubiE OKGIIK_09180 0.22 -0.4
1,983,455 - ubiE OKGIIK_09180 0.22 -1.8
1,983,455 - ubiE OKGIIK_09180 0.22 -0.5
1,983,455 - ubiE OKGIIK_09180 0.22 +0.2
1,983,455 - ubiE OKGIIK_09180 0.22 -1.0
1,983,455 - ubiE OKGIIK_09180 0.22 +0.6
1,983,455 - ubiE OKGIIK_09180 0.22 +0.0
1,983,455 - ubiE OKGIIK_09180 0.22 -0.2
1,983,628 + ubiE OKGIIK_09180 0.41 -1.0
1,983,628 + ubiE OKGIIK_09180 0.41 -1.3
1,983,628 + ubiE OKGIIK_09180 0.41 -1.0
1,983,628 + ubiE OKGIIK_09180 0.41 -0.5
1,983,629 - ubiE OKGIIK_09180 0.41 +0.4
1,983,910 + ubiE OKGIIK_09180 0.71 -3.5
1,983,910 + ubiE OKGIIK_09180 0.71 -1.4
1,983,910 + ubiE OKGIIK_09180 0.71 -0.8
1,983,910 + ubiE OKGIIK_09180 0.71 -3.0
1,983,910 + ubiE OKGIIK_09180 0.71 -1.8
1,983,910 + ubiE OKGIIK_09180 0.71 +0.6
1,984,215 + +0.8
1,984,215 + -1.0
1,984,215 + +0.5
1,984,215 + -1.0
1,984,215 + -1.5
1,984,215 + +0.6
1,984,215 + -1.5
1,984,216 - -2.1
1,984,216 - -2.0
1,984,486 + metH1 OKGIIK_09185 0.25 -1.3
1,984,486 + metH1 OKGIIK_09185 0.25 -0.8
1,984,486 + metH1 OKGIIK_09185 0.25 -0.8
1,984,486 + metH1 OKGIIK_09185 0.25 +0.3
1,984,555 + metH1 OKGIIK_09185 0.32 +0.2
1,984,555 + metH1 OKGIIK_09185 0.32 -0.5
1,984,555 + metH1 OKGIIK_09185 0.32 -0.5
1,984,555 + metH1 OKGIIK_09185 0.32 -1.1
1,984,555 + metH1 OKGIIK_09185 0.32 -0.2
1,984,555 + metH1 OKGIIK_09185 0.32 +0.0
1,984,555 + metH1 OKGIIK_09185 0.32 -1.3
1,984,556 - metH1 OKGIIK_09185 0.32 -2.0
1,984,556 - metH1 OKGIIK_09185 0.32 -0.1
1,984,556 - metH1 OKGIIK_09185 0.32 -0.4
1,984,576 + metH1 OKGIIK_09185 0.34 +0.4
1,984,577 - metH1 OKGIIK_09185 0.34 +0.4
1,984,577 - metH1 OKGIIK_09185 0.34 -0.1
1,984,577 - metH1 OKGIIK_09185 0.34 -1.5
1,984,762 + metH1 OKGIIK_09185 0.51 -1.0
1,984,762 + metH1 OKGIIK_09185 0.51 -1.3
1,984,762 + metH1 OKGIIK_09185 0.51 -1.1
1,984,762 + metH1 OKGIIK_09185 0.51 -1.7
1,984,762 + metH1 OKGIIK_09185 0.51 +1.0
1,984,762 + metH1 OKGIIK_09185 0.51 +0.0
1,984,763 - metH1 OKGIIK_09185 0.51 -1.0
1,984,763 - metH1 OKGIIK_09185 0.51 -1.5
1,984,763 - metH1 OKGIIK_09185 0.51 -1.3
1,984,763 - metH1 OKGIIK_09185 0.51 -1.0
1,984,763 - metH1 OKGIIK_09185 0.51 -0.2
1,984,763 - metH1 OKGIIK_09185 0.51 -1.5
1,984,763 - metH1 OKGIIK_09185 0.51 -2.7
1,984,763 - metH1 OKGIIK_09185 0.51 -2.3
1,984,763 - metH1 OKGIIK_09185 0.51 -1.0
1,984,763 - metH1 OKGIIK_09185 0.51 -0.4
1,984,763 - metH1 OKGIIK_09185 0.51 +0.6
1,984,763 - metH1 OKGIIK_09185 0.51 -1.8
1,984,763 - metH1 OKGIIK_09185 0.51 -0.3
1,984,969 + metH1 OKGIIK_09185 0.70 -1.0
1,984,969 + metH1 OKGIIK_09185 0.70 -2.1
1,984,969 + metH1 OKGIIK_09185 0.70 +0.3
1,984,969 + metH1 OKGIIK_09185 0.70 -0.8
1,984,969 + metH1 OKGIIK_09185 0.70 -2.1
1,984,969 + metH1 OKGIIK_09185 0.70 -1.0
1,984,969 + metH1 OKGIIK_09185 0.70 -2.0
1,984,969 + metH1 OKGIIK_09185 0.70 -1.4
1,984,970 - metH1 OKGIIK_09185 0.70 -2.0
1,984,970 - metH1 OKGIIK_09185 0.70 -0.9
1,984,970 - metH1 OKGIIK_09185 0.70 -1.0
1,984,970 - metH1 OKGIIK_09185 0.70 -1.5
1,984,970 - metH1 OKGIIK_09185 0.70 -1.3
1,984,970 - metH1 OKGIIK_09185 0.70 -0.4
1,984,970 - metH1 OKGIIK_09185 0.70 -0.5
1,984,971 - metH1 OKGIIK_09185 0.70 -0.7
1,984,972 + metH1 OKGIIK_09185 0.70 +0.6
1,984,972 + metH1 OKGIIK_09185 0.70 -0.8
1,984,972 + metH1 OKGIIK_09185 0.70 -0.3
1,984,973 - metH1 OKGIIK_09185 0.70 -1.8
1,984,973 - metH1 OKGIIK_09185 0.70 -0.5
1,985,077 + metH1 OKGIIK_09185 0.79 -0.5
1,985,077 + metH1 OKGIIK_09185 0.79 -0.3
1,985,077 + metH1 OKGIIK_09185 0.79 -1.0
1,985,077 + metH1 OKGIIK_09185 0.79 -1.3
1,985,078 - metH1 OKGIIK_09185 0.79 +0.1
1,985,078 - metH1 OKGIIK_09185 0.79 +0.0
1,985,078 - metH1 OKGIIK_09185 0.79 +0.5
1,985,078 - metH1 OKGIIK_09185 0.79 +0.0
1,985,078 - metH1 OKGIIK_09185 0.79 +0.0
1,985,125 + metH1 OKGIIK_09185 0.84 -1.8
1,985,125 + metH1 OKGIIK_09185 0.84 +0.7
1,985,125 + metH1 OKGIIK_09185 0.84 -1.3
1,985,125 + metH1 OKGIIK_09185 0.84 -0.1
1,985,214 + -2.0
1,985,214 + -2.4
1,985,215 - -1.5
1,985,215 - -1.4
1,985,384 - -0.4
1,985,514 - -1.5
1,985,802 - OKGIIK_09190 0.16 -2.0
1,985,802 - OKGIIK_09190 0.16 -0.3
1,985,802 - OKGIIK_09190 0.16 +0.0
1,985,802 - OKGIIK_09190 0.16 -0.4
1,985,802 - OKGIIK_09190 0.16 -1.3
1,985,987 + OKGIIK_09190 0.23 -3.6
1,985,987 + OKGIIK_09190 0.23 -0.3
1,985,987 + OKGIIK_09190 0.23 +0.1
1,985,987 + OKGIIK_09190 0.23 -0.8
1,985,987 + OKGIIK_09190 0.23 +0.2
1,985,987 + OKGIIK_09190 0.23 -1.4
1,985,987 + OKGIIK_09190 0.23 -1.8
1,985,988 - OKGIIK_09190 0.23 +0.2
1,985,988 - OKGIIK_09190 0.23 -1.2
1,985,988 - OKGIIK_09190 0.23 -0.1
1,985,988 - OKGIIK_09190 0.23 -0.8
1,985,988 - OKGIIK_09190 0.23 -2.0
1,985,988 - OKGIIK_09190 0.23 -2.4
1,985,988 - OKGIIK_09190 0.23 -1.6
1,985,988 - OKGIIK_09190 0.23 -1.6
1,985,988 - OKGIIK_09190 0.23 -0.6
1,986,128 + OKGIIK_09190 0.28 +1.4
1,986,128 + OKGIIK_09190 0.28 -0.5
1,986,129 - OKGIIK_09190 0.28 -2.1
1,986,129 - OKGIIK_09190 0.28 +0.6
1,986,287 + OKGIIK_09190 0.34 -1.6
1,986,287 + OKGIIK_09190 0.34 -2.3
1,986,287 + OKGIIK_09190 0.34 -0.5
1,986,287 + OKGIIK_09190 0.34 -0.4
1,986,287 + OKGIIK_09190 0.34 -0.7
1,986,287 + OKGIIK_09190 0.34 +0.2
1,986,287 + OKGIIK_09190 0.34 -1.0
1,986,288 - OKGIIK_09190 0.34 -1.0
1,986,288 - OKGIIK_09190 0.34 +0.0
1,986,288 - OKGIIK_09190 0.34 +0.0
1,986,288 - OKGIIK_09190 0.34 +1.0
1,986,288 - OKGIIK_09190 0.34 -1.1
1,986,288 - OKGIIK_09190 0.34 +0.2
1,986,288 - OKGIIK_09190 0.34 -0.5
1,986,288 - OKGIIK_09190 0.34 -2.3
1,986,288 - OKGIIK_09190 0.34 -1.3
1,986,288 - OKGIIK_09190 0.34 +0.0
1,986,288 - OKGIIK_09190 0.34 +0.2

Or see this region's nucleotide sequence