Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_08695 and OKGIIK_08700 are separated by 71 nucleotides OKGIIK_08700 and OKGIIK_08705 are separated by 51 nucleotides OKGIIK_08705 and OKGIIK_08710 are separated by 58 nucleotides
OKGIIK_08695: OKGIIK_08695 - hypothetical protein, at 1,896,191 to 1,897,276
_08695
OKGIIK_08700: OKGIIK_08700 - hypothetical protein, at 1,897,348 to 1,897,725
_08700
OKGIIK_08705: OKGIIK_08705 - hypothetical protein, at 1,897,777 to 1,898,094
_08705
OKGIIK_08710: OKGIIK_08710 - phage major capsid protein, at 1,898,153 to 1,899,190
_08710
Position (kb)
1897
1898 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1896.348 kb on + strand, within OKGIIK_08695 at 1896.399 kb on - strand, within OKGIIK_08695 at 1896.561 kb on + strand, within OKGIIK_08695 at 1896.561 kb on + strand, within OKGIIK_08695 at 1896.561 kb on + strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.671 kb on - strand, within OKGIIK_08695 at 1896.671 kb on - strand, within OKGIIK_08695 at 1896.720 kb on + strand, within OKGIIK_08695 at 1896.720 kb on + strand, within OKGIIK_08695 at 1896.721 kb on - strand, within OKGIIK_08695 at 1896.721 kb on - strand, within OKGIIK_08695 at 1896.721 kb on - strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.787 kb on - strand, within OKGIIK_08695 at 1896.818 kb on + strand, within OKGIIK_08695 at 1896.819 kb on - strand, within OKGIIK_08695 at 1896.819 kb on - strand, within OKGIIK_08695 at 1896.841 kb on + strand, within OKGIIK_08695 at 1896.928 kb on - strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.934 kb on - strand, within OKGIIK_08695 at 1896.934 kb on - strand, within OKGIIK_08695 at 1896.934 kb on - strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.033 kb on - strand, within OKGIIK_08695 at 1897.033 kb on - strand, within OKGIIK_08695 at 1897.033 kb on - strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.092 kb on + strand, within OKGIIK_08695 at 1897.101 kb on + strand, within OKGIIK_08695 at 1897.102 kb on - strand, within OKGIIK_08695 at 1897.260 kb on + strand at 1897.260 kb on + strand at 1897.261 kb on - strand at 1897.261 kb on - strand at 1897.280 kb on + strand at 1897.280 kb on + strand at 1897.281 kb on - strand at 1897.281 kb on - strand at 1897.281 kb on - strand at 1897.281 kb on - strand at 1897.281 kb on - strand at 1897.281 kb on - strand at 1897.289 kb on + strand at 1897.289 kb on + strand at 1897.289 kb on + strand at 1897.290 kb on - strand at 1897.290 kb on - strand at 1897.349 kb on + strand at 1897.520 kb on + strand, within OKGIIK_08700 at 1897.520 kb on + strand, within OKGIIK_08700 at 1897.521 kb on - strand, within OKGIIK_08700 at 1897.729 kb on + strand at 1897.729 kb on + strand at 1897.730 kb on - strand at 1897.730 kb on - strand at 1897.730 kb on - strand at 1897.730 kb on - strand at 1897.790 kb on + strand at 1897.790 kb on + strand at 1897.791 kb on - strand at 1897.848 kb on - strand, within OKGIIK_08705 at 1898.205 kb on + strand at 1898.226 kb on + strand at 1898.226 kb on + strand at 1898.227 kb on - strand at 1898.227 kb on - strand at 1898.227 kb on - strand at 1898.235 kb on + strand at 1898.235 kb on + strand at 1898.235 kb on + strand at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.322 kb on + strand, within OKGIIK_08710 at 1898.323 kb on - strand, within OKGIIK_08710 at 1898.323 kb on - strand, within OKGIIK_08710 at 1898.323 kb on - strand, within OKGIIK_08710 at 1898.323 kb on - strand, within OKGIIK_08710 at 1898.499 kb on + strand, within OKGIIK_08710 at 1898.499 kb on + strand, within OKGIIK_08710 at 1898.499 kb on + strand, within OKGIIK_08710 at 1898.500 kb on - strand, within OKGIIK_08710 at 1898.500 kb on - strand, within OKGIIK_08710 at 1898.500 kb on - strand, within OKGIIK_08710 at 1898.500 kb on - strand, within OKGIIK_08710 at 1898.500 kb on - strand, within OKGIIK_08710 at 1898.500 kb on - strand, within OKGIIK_08710 at 1898.508 kb on + strand, within OKGIIK_08710 at 1898.508 kb on + strand, within OKGIIK_08710 at 1898.509 kb on - strand, within OKGIIK_08710 at 1898.554 kb on - strand, within OKGIIK_08710 at 1898.637 kb on + strand, within OKGIIK_08710 at 1898.637 kb on + strand, within OKGIIK_08710 at 1898.638 kb on - strand, within OKGIIK_08710 at 1898.638 kb on - strand, within OKGIIK_08710 at 1898.638 kb on - strand, within OKGIIK_08710 at 1898.638 kb on - strand, within OKGIIK_08710 at 1898.638 kb on - strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.641 kb on + strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.642 kb on - strand, within OKGIIK_08710 at 1898.696 kb on + strand, within OKGIIK_08710 at 1898.696 kb on + strand, within OKGIIK_08710 at 1898.696 kb on + strand, within OKGIIK_08710 at 1898.696 kb on + strand, within OKGIIK_08710 at 1898.696 kb on + strand, within OKGIIK_08710 at 1898.697 kb on - strand, within OKGIIK_08710 at 1898.697 kb on - strand, within OKGIIK_08710 at 1898.697 kb on - strand, within OKGIIK_08710 at 1898.697 kb on - strand, within OKGIIK_08710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x remove 1,896,348 + OKGIIK_08695 0.14 +1.0 1,896,399 - OKGIIK_08695 0.19 +0.8 1,896,561 + OKGIIK_08695 0.34 -0.9 1,896,561 + OKGIIK_08695 0.34 -1.3 1,896,561 + OKGIIK_08695 0.34 -1.2 1,896,562 - OKGIIK_08695 0.34 +1.1 1,896,562 - OKGIIK_08695 0.34 -3.4 1,896,562 - OKGIIK_08695 0.34 +0.3 1,896,562 - OKGIIK_08695 0.34 -1.6 1,896,562 - OKGIIK_08695 0.34 -1.0 1,896,562 - OKGIIK_08695 0.34 -0.7 1,896,562 - OKGIIK_08695 0.34 -0.2 1,896,562 - OKGIIK_08695 0.34 +0.0 1,896,671 - OKGIIK_08695 0.44 -2.9 1,896,671 - OKGIIK_08695 0.44 +0.3 1,896,720 + OKGIIK_08695 0.49 +0.6 1,896,720 + OKGIIK_08695 0.49 -1.2 1,896,721 - OKGIIK_08695 0.49 -1.0 1,896,721 - OKGIIK_08695 0.49 +0.4 1,896,721 - OKGIIK_08695 0.49 -0.4 1,896,777 + OKGIIK_08695 0.54 -0.6 1,896,777 + OKGIIK_08695 0.54 +0.0 1,896,777 + OKGIIK_08695 0.54 -0.6 1,896,777 + OKGIIK_08695 0.54 +0.7 1,896,777 + OKGIIK_08695 0.54 +0.8 1,896,777 + OKGIIK_08695 0.54 -0.8 1,896,778 - OKGIIK_08695 0.54 +0.1 1,896,778 - OKGIIK_08695 0.54 +0.7 1,896,778 - OKGIIK_08695 0.54 +0.3 1,896,778 - OKGIIK_08695 0.54 +0.7 1,896,778 - OKGIIK_08695 0.54 -0.7 1,896,778 - OKGIIK_08695 0.54 +0.4 1,896,778 - OKGIIK_08695 0.54 -2.2 1,896,778 - OKGIIK_08695 0.54 -0.7 1,896,778 - OKGIIK_08695 0.54 +1.6 1,896,787 - OKGIIK_08695 0.55 +0.7 1,896,818 + OKGIIK_08695 0.58 -0.3 1,896,819 - OKGIIK_08695 0.58 -2.4 1,896,819 - OKGIIK_08695 0.58 +0.5 1,896,841 + OKGIIK_08695 0.60 -1.6 1,896,928 - OKGIIK_08695 0.68 -1.7 1,896,933 + OKGIIK_08695 0.68 -1.0 1,896,933 + OKGIIK_08695 0.68 +0.1 1,896,933 + OKGIIK_08695 0.68 -0.2 1,896,933 + OKGIIK_08695 0.68 -0.3 1,896,933 + OKGIIK_08695 0.68 -0.3 1,896,933 + OKGIIK_08695 0.68 -0.6 1,896,934 - OKGIIK_08695 0.68 -0.2 1,896,934 - OKGIIK_08695 0.68 +0.1 1,896,934 - OKGIIK_08695 0.68 -1.5 1,897,032 + OKGIIK_08695 0.77 +0.4 1,897,032 + OKGIIK_08695 0.77 -0.2 1,897,032 + OKGIIK_08695 0.77 +1.1 1,897,032 + OKGIIK_08695 0.77 -1.0 1,897,032 + OKGIIK_08695 0.77 +0.9 1,897,032 + OKGIIK_08695 0.77 -0.3 1,897,032 + OKGIIK_08695 0.77 -1.3 1,897,032 + OKGIIK_08695 0.77 -2.5 1,897,033 - OKGIIK_08695 0.78 +0.6 1,897,033 - OKGIIK_08695 0.78 -0.3 1,897,033 - OKGIIK_08695 0.78 +0.1 1,897,065 + OKGIIK_08695 0.80 -3.0 1,897,065 + OKGIIK_08695 0.80 -0.7 1,897,065 + OKGIIK_08695 0.80 +0.3 1,897,065 + OKGIIK_08695 0.80 -1.7 1,897,092 + OKGIIK_08695 0.83 -1.2 1,897,101 + OKGIIK_08695 0.84 +0.7 1,897,102 - OKGIIK_08695 0.84 -0.1 1,897,260 + -0.6 1,897,260 + +0.4 1,897,261 - +0.3 1,897,261 - -1.9 1,897,280 + -0.7 1,897,280 + -0.4 1,897,281 - -0.7 1,897,281 - -0.0 1,897,281 - -0.7 1,897,281 - +0.3 1,897,281 - -1.3 1,897,281 - -1.0 1,897,289 + -0.7 1,897,289 + +1.5 1,897,289 + +0.3 1,897,290 - -0.1 1,897,290 - -0.7 1,897,349 + -0.7 1,897,520 + OKGIIK_08700 0.46 -0.0 1,897,520 + OKGIIK_08700 0.46 +0.2 1,897,521 - OKGIIK_08700 0.46 +0.8 1,897,729 + -0.0 1,897,729 + -0.1 1,897,730 - +0.9 1,897,730 - +0.6 1,897,730 - +0.3 1,897,730 - -1.7 1,897,790 + +0.8 1,897,790 + -0.5 1,897,791 - -0.6 1,897,848 - OKGIIK_08705 0.22 -1.2 1,898,205 + -0.4 1,898,226 + +0.1 1,898,226 + -0.3 1,898,227 - -0.3 1,898,227 - +1.1 1,898,227 - -2.0 1,898,235 + +0.7 1,898,235 + -2.2 1,898,235 + +0.1 1,898,322 + OKGIIK_08710 0.16 -1.5 1,898,322 + OKGIIK_08710 0.16 -0.3 1,898,322 + OKGIIK_08710 0.16 +1.2 1,898,322 + OKGIIK_08710 0.16 -0.5 1,898,322 + OKGIIK_08710 0.16 -0.9 1,898,322 + OKGIIK_08710 0.16 +0.7 1,898,322 + OKGIIK_08710 0.16 -1.0 1,898,323 - OKGIIK_08710 0.16 -0.3 1,898,323 - OKGIIK_08710 0.16 -1.5 1,898,323 - OKGIIK_08710 0.16 -0.8 1,898,323 - OKGIIK_08710 0.16 -0.8 1,898,499 + OKGIIK_08710 0.33 -0.5 1,898,499 + OKGIIK_08710 0.33 -1.7 1,898,499 + OKGIIK_08710 0.33 -1.7 1,898,500 - OKGIIK_08710 0.33 +1.3 1,898,500 - OKGIIK_08710 0.33 +1.0 1,898,500 - OKGIIK_08710 0.33 -0.3 1,898,500 - OKGIIK_08710 0.33 -0.5 1,898,500 - OKGIIK_08710 0.33 +0.1 1,898,500 - OKGIIK_08710 0.33 +1.7 1,898,508 + OKGIIK_08710 0.34 -0.6 1,898,508 + OKGIIK_08710 0.34 +1.8 1,898,509 - OKGIIK_08710 0.34 +0.8 1,898,554 - OKGIIK_08710 0.39 +0.7 1,898,637 + OKGIIK_08710 0.47 -0.6 1,898,637 + OKGIIK_08710 0.47 -0.9 1,898,638 - OKGIIK_08710 0.47 +0.6 1,898,638 - OKGIIK_08710 0.47 -1.2 1,898,638 - OKGIIK_08710 0.47 +0.0 1,898,638 - OKGIIK_08710 0.47 +0.9 1,898,638 - OKGIIK_08710 0.47 -1.3 1,898,641 + OKGIIK_08710 0.47 -0.1 1,898,641 + OKGIIK_08710 0.47 -1.4 1,898,641 + OKGIIK_08710 0.47 +0.6 1,898,641 + OKGIIK_08710 0.47 -0.3 1,898,641 + OKGIIK_08710 0.47 -0.7 1,898,641 + OKGIIK_08710 0.47 -0.3 1,898,641 + OKGIIK_08710 0.47 +0.3 1,898,642 - OKGIIK_08710 0.47 -0.6 1,898,642 - OKGIIK_08710 0.47 +0.9 1,898,642 - OKGIIK_08710 0.47 +0.5 1,898,642 - OKGIIK_08710 0.47 -0.1 1,898,642 - OKGIIK_08710 0.47 -0.3 1,898,642 - OKGIIK_08710 0.47 +0.3 1,898,642 - OKGIIK_08710 0.47 +0.3 1,898,642 - OKGIIK_08710 0.47 -0.7 1,898,642 - OKGIIK_08710 0.47 +2.2 1,898,696 + OKGIIK_08710 0.52 -0.1 1,898,696 + OKGIIK_08710 0.52 +0.5 1,898,696 + OKGIIK_08710 0.52 +0.3 1,898,696 + OKGIIK_08710 0.52 +0.5 1,898,696 + OKGIIK_08710 0.52 -0.3 1,898,697 - OKGIIK_08710 0.52 -0.3 1,898,697 - OKGIIK_08710 0.52 -1.5 1,898,697 - OKGIIK_08710 0.52 -0.4 1,898,697 - OKGIIK_08710 0.52 +0.9
Or see this region's nucleotide sequence