Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04820

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasd and OKGIIK_04820 are separated by 2 nucleotidesOKGIIK_04820 and OKGIIK_04825 are separated by 171 nucleotides OKGIIK_04815: asd - aspartate-semialdehyde dehydrogenase, at 1,047,183 to 1,048,214 asd OKGIIK_04820: OKGIIK_04820 - hypothetical protein, at 1,048,217 to 1,048,513 _04820 OKGIIK_04825: OKGIIK_04825 - Fimbrial protein FimV, at 1,048,685 to 1,051,072 _04825 Position (kb) 1048 1049Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.206 kb on + strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.207 kb on - strandat 1048.541 kb on + strandat 1048.541 kb on + strandat 1048.541 kb on + strandat 1048.542 kb on - strandat 1048.542 kb on - strandat 1048.542 kb on - strandat 1048.542 kb on - strandat 1048.542 kb on - strandat 1048.542 kb on - strandat 1048.558 kb on + strandat 1048.558 kb on + strandat 1048.558 kb on + strandat 1048.558 kb on + strandat 1048.559 kb on - strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.571 kb on + strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.572 kb on - strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.586 kb on + strandat 1048.587 kb on - strandat 1048.587 kb on - strandat 1048.587 kb on - strandat 1048.587 kb on - strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.592 kb on + strandat 1048.593 kb on + strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.593 kb on - strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.597 kb on + strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.598 kb on - strandat 1048.735 kb on + strandat 1048.939 kb on + strand, within OKGIIK_04825at 1048.939 kb on + strand, within OKGIIK_04825at 1048.939 kb on + strand, within OKGIIK_04825at 1048.939 kb on + strand, within OKGIIK_04825at 1048.939 kb on + strand, within OKGIIK_04825at 1048.940 kb on - strand, within OKGIIK_04825at 1048.940 kb on - strand, within OKGIIK_04825at 1049.051 kb on + strand, within OKGIIK_04825at 1049.052 kb on - strand, within OKGIIK_04825at 1049.052 kb on - strand, within OKGIIK_04825at 1049.391 kb on - strand, within OKGIIK_04825

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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1,048,206 + -1.4
1,048,206 + +0.2
1,048,206 + +0.4
1,048,206 + -0.4
1,048,206 + +0.2
1,048,206 + -3.1
1,048,206 + +0.4
1,048,206 + +0.9
1,048,207 - -0.6
1,048,207 - -2.4
1,048,207 - +0.8
1,048,207 - +1.2
1,048,207 - +0.6
1,048,207 - +1.8
1,048,207 - -0.1
1,048,207 - +0.1
1,048,207 - -1.1
1,048,207 - -0.7
1,048,207 - -0.9
1,048,207 - -0.6
1,048,207 - -0.3
1,048,541 + -1.6
1,048,541 + -0.6
1,048,541 + -0.1
1,048,542 - -1.4
1,048,542 - +0.2
1,048,542 - +0.3
1,048,542 - -1.1
1,048,542 - -0.6
1,048,542 - -0.2
1,048,558 + -0.2
1,048,558 + -0.2
1,048,558 + +0.2
1,048,558 + +0.2
1,048,559 - +0.6
1,048,571 + -1.6
1,048,571 + +0.7
1,048,571 + -0.1
1,048,571 + +0.0
1,048,571 + +0.5
1,048,571 + -0.6
1,048,571 + -0.2
1,048,571 + -1.1
1,048,571 + +0.5
1,048,571 + +0.5
1,048,571 + -0.8
1,048,571 + -0.6
1,048,571 + +0.0
1,048,572 - -0.8
1,048,572 - +1.2
1,048,572 - -0.6
1,048,572 - -1.8
1,048,572 - -0.7
1,048,572 - -0.2
1,048,572 - -1.6
1,048,572 - -1.1
1,048,572 - -0.5
1,048,572 - +0.4
1,048,572 - -2.6
1,048,586 + -0.1
1,048,586 + -1.9
1,048,586 + +1.2
1,048,586 + -1.7
1,048,586 + -1.6
1,048,586 + +0.6
1,048,586 + -1.9
1,048,586 + -0.4
1,048,586 + +0.1
1,048,586 + +0.2
1,048,586 + -1.0
1,048,586 + -2.5
1,048,586 + -1.1
1,048,587 - +0.7
1,048,587 - +0.2
1,048,587 - -0.8
1,048,587 - +0.5
1,048,592 + -0.5
1,048,592 + +0.6
1,048,592 + +0.0
1,048,592 + +0.2
1,048,592 + +0.6
1,048,592 + +0.4
1,048,592 + +0.9
1,048,592 + +0.9
1,048,592 + -1.8
1,048,592 + -0.5
1,048,592 + +0.8
1,048,592 + -1.0
1,048,592 + -0.6
1,048,592 + -1.7
1,048,593 + -2.0
1,048,593 - +1.0
1,048,593 - -0.4
1,048,593 - -0.8
1,048,593 - +0.1
1,048,593 - -0.4
1,048,593 - +0.1
1,048,593 - -0.5
1,048,593 - +0.2
1,048,593 - +0.5
1,048,597 + +0.3
1,048,597 + +0.2
1,048,597 + +0.5
1,048,597 + -0.5
1,048,597 + -0.4
1,048,597 + -0.1
1,048,597 + -0.1
1,048,597 + -0.4
1,048,598 - -1.2
1,048,598 - -2.4
1,048,598 - -0.6
1,048,598 - +0.1
1,048,598 - -1.4
1,048,598 - -0.1
1,048,598 - -0.6
1,048,598 - +0.8
1,048,598 - +0.1
1,048,735 + -0.1
1,048,939 + OKGIIK_04825 0.11 -0.2
1,048,939 + OKGIIK_04825 0.11 +0.9
1,048,939 + OKGIIK_04825 0.11 -0.6
1,048,939 + OKGIIK_04825 0.11 -0.2
1,048,939 + OKGIIK_04825 0.11 -0.4
1,048,940 - OKGIIK_04825 0.11 -0.4
1,048,940 - OKGIIK_04825 0.11 -1.4
1,049,051 + OKGIIK_04825 0.15 +1.1
1,049,052 - OKGIIK_04825 0.15 -0.9
1,049,052 - OKGIIK_04825 0.15 -0.4
1,049,391 - OKGIIK_04825 0.30 -0.5

Or see this region's nucleotide sequence