Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04015 and OKGIIK_04020 are separated by 154 nucleotides OKGIIK_04020 and paaJ are separated by 162 nucleotides
OKGIIK_04015: OKGIIK_04015 - Methylcrotonoyl-CoA carboxylase, at 877,751 to 879,358
_04015
OKGIIK_04020: OKGIIK_04020 - Large subunit ribosomal protein L19e, at 879,513 to 879,893
_04020
OKGIIK_04025: paaJ - acetyl-CoA C-acyltransferase, at 880,056 to 881,240
paaJ
Position (kb) 879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 878.616 kb on + strand, within OKGIIK_04015 at 878.617 kb on - strand, within OKGIIK_04015 at 878.617 kb on - strand, within OKGIIK_04015 at 878.617 kb on - strand, within OKGIIK_04015 at 878.617 kb on - strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.778 kb on + strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.779 kb on - strand, within OKGIIK_04015 at 878.856 kb on + strand, within OKGIIK_04015 at 878.856 kb on + strand, within OKGIIK_04015 at 878.856 kb on + strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.857 kb on - strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.937 kb on + strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 878.938 kb on - strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.009 kb on + strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.010 kb on - strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.114 kb on + strand, within OKGIIK_04015 at 879.115 kb on - strand, within OKGIIK_04015 at 879.115 kb on - strand, within OKGIIK_04015 at 879.115 kb on - strand, within OKGIIK_04015 at 879.115 kb on - strand, within OKGIIK_04015 at 879.115 kb on - strand, within OKGIIK_04015 at 879.115 kb on - strand, within OKGIIK_04015 at 879.376 kb on + strand at 879.377 kb on - strand at 879.377 kb on - strand at 879.408 kb on - strand at 879.408 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.453 kb on - strand at 879.767 kb on + strand, within OKGIIK_04020 at 879.768 kb on - strand, within OKGIIK_04020 at 879.873 kb on + strand at 879.874 kb on - strand at 879.874 kb on - strand at 879.874 kb on - strand at 879.878 kb on + strand at 879.879 kb on - strand at 879.879 kb on - strand at 879.884 kb on + strand at 879.884 kb on + strand at 879.884 kb on + strand at 879.884 kb on + strand at 879.885 kb on - strand at 879.885 kb on - strand at 879.932 kb on + strand at 879.932 kb on + strand at 879.932 kb on + strand at 879.932 kb on + strand at 879.932 kb on + strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.933 kb on - strand at 879.935 kb on + strand at 879.935 kb on + strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.936 kb on - strand at 879.938 kb on + strand at 879.969 kb on + strand at 879.970 kb on - strand at 879.970 kb on - strand at 879.970 kb on - strand at 879.970 kb on - strand at 879.970 kb on - strand at 879.970 kb on - strand at 879.970 kb on - strand at 879.992 kb on + strand at 879.992 kb on + strand at 879.993 kb on - strand at 879.993 kb on - strand at 879.993 kb on - strand at 879.993 kb on - strand at 880.023 kb on + strand at 880.023 kb on + strand at 880.023 kb on + strand at 880.023 kb on + strand at 880.023 kb on + strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.024 kb on - strand at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.735 kb on + strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.736 kb on - strand, within paaJ at 880.783 kb on + strand, within paaJ at 880.783 kb on + strand, within paaJ at 880.784 kb on - strand, within paaJ at 880.784 kb on - strand, within paaJ at 880.784 kb on - strand, within paaJ at 880.837 kb on + strand, within paaJ at 880.850 kb on + strand, within paaJ
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x remove 878,616 + OKGIIK_04015 0.54 -1.4 878,617 - OKGIIK_04015 0.54 +0.2 878,617 - OKGIIK_04015 0.54 -0.2 878,617 - OKGIIK_04015 0.54 -0.3 878,617 - OKGIIK_04015 0.54 -1.4 878,778 + OKGIIK_04015 0.64 +1.2 878,778 + OKGIIK_04015 0.64 -0.7 878,778 + OKGIIK_04015 0.64 +0.4 878,778 + OKGIIK_04015 0.64 +0.2 878,778 + OKGIIK_04015 0.64 +0.2 878,778 + OKGIIK_04015 0.64 +0.1 878,778 + OKGIIK_04015 0.64 -0.2 878,778 + OKGIIK_04015 0.64 -1.6 878,779 - OKGIIK_04015 0.64 +0.8 878,779 - OKGIIK_04015 0.64 +0.5 878,779 - OKGIIK_04015 0.64 +0.2 878,779 - OKGIIK_04015 0.64 -1.4 878,779 - OKGIIK_04015 0.64 +0.4 878,779 - OKGIIK_04015 0.64 -1.5 878,779 - OKGIIK_04015 0.64 +0.9 878,779 - OKGIIK_04015 0.64 -0.3 878,779 - OKGIIK_04015 0.64 -1.1 878,856 + OKGIIK_04015 0.69 +0.2 878,856 + OKGIIK_04015 0.69 -0.1 878,856 + OKGIIK_04015 0.69 -1.0 878,857 - OKGIIK_04015 0.69 -0.3 878,857 - OKGIIK_04015 0.69 -1.5 878,857 - OKGIIK_04015 0.69 -0.4 878,857 - OKGIIK_04015 0.69 -1.9 878,857 - OKGIIK_04015 0.69 -0.3 878,857 - OKGIIK_04015 0.69 -0.2 878,857 - OKGIIK_04015 0.69 +0.2 878,857 - OKGIIK_04015 0.69 -0.1 878,857 - OKGIIK_04015 0.69 -1.1 878,857 - OKGIIK_04015 0.69 +0.5 878,937 + OKGIIK_04015 0.74 +0.3 878,937 + OKGIIK_04015 0.74 -0.2 878,937 + OKGIIK_04015 0.74 +1.2 878,937 + OKGIIK_04015 0.74 -0.8 878,937 + OKGIIK_04015 0.74 +1.2 878,937 + OKGIIK_04015 0.74 -0.1 878,937 + OKGIIK_04015 0.74 -1.1 878,937 + OKGIIK_04015 0.74 -0.1 878,937 + OKGIIK_04015 0.74 -0.2 878,937 + OKGIIK_04015 0.74 +1.1 878,937 + OKGIIK_04015 0.74 -1.2 878,938 - OKGIIK_04015 0.74 +0.1 878,938 - OKGIIK_04015 0.74 -0.0 878,938 - OKGIIK_04015 0.74 -1.0 878,938 - OKGIIK_04015 0.74 -0.7 878,938 - OKGIIK_04015 0.74 -1.1 878,938 - OKGIIK_04015 0.74 -1.2 878,938 - OKGIIK_04015 0.74 +0.2 878,938 - OKGIIK_04015 0.74 +0.5 878,938 - OKGIIK_04015 0.74 +0.2 878,938 - OKGIIK_04015 0.74 -0.8 878,938 - OKGIIK_04015 0.74 -0.3 878,938 - OKGIIK_04015 0.74 +0.2 878,938 - OKGIIK_04015 0.74 -0.6 878,938 - OKGIIK_04015 0.74 -0.7 878,938 - OKGIIK_04015 0.74 +0.2 878,938 - OKGIIK_04015 0.74 -1.7 878,938 - OKGIIK_04015 0.74 +0.2 879,009 + OKGIIK_04015 0.78 -2.4 879,009 + OKGIIK_04015 0.78 -2.1 879,009 + OKGIIK_04015 0.78 +1.2 879,009 + OKGIIK_04015 0.78 -0.7 879,009 + OKGIIK_04015 0.78 +0.5 879,009 + OKGIIK_04015 0.78 +0.6 879,009 + OKGIIK_04015 0.78 -1.6 879,010 - OKGIIK_04015 0.78 +0.3 879,010 - OKGIIK_04015 0.78 +0.8 879,010 - OKGIIK_04015 0.78 +1.0 879,010 - OKGIIK_04015 0.78 -1.5 879,010 - OKGIIK_04015 0.78 +1.3 879,010 - OKGIIK_04015 0.78 -1.4 879,010 - OKGIIK_04015 0.78 +0.6 879,010 - OKGIIK_04015 0.78 +0.1 879,010 - OKGIIK_04015 0.78 -0.6 879,010 - OKGIIK_04015 0.78 -0.8 879,010 - OKGIIK_04015 0.78 +0.3 879,010 - OKGIIK_04015 0.78 +0.4 879,010 - OKGIIK_04015 0.78 +1.0 879,114 + OKGIIK_04015 0.85 -1.6 879,114 + OKGIIK_04015 0.85 +0.6 879,114 + OKGIIK_04015 0.85 -0.8 879,114 + OKGIIK_04015 0.85 -0.8 879,114 + OKGIIK_04015 0.85 -0.1 879,114 + OKGIIK_04015 0.85 -0.1 879,114 + OKGIIK_04015 0.85 +0.0 879,114 + OKGIIK_04015 0.85 -0.6 879,114 + OKGIIK_04015 0.85 +0.1 879,114 + OKGIIK_04015 0.85 -1.6 879,114 + OKGIIK_04015 0.85 -0.1 879,114 + OKGIIK_04015 0.85 -0.0 879,115 - OKGIIK_04015 0.85 -1.4 879,115 - OKGIIK_04015 0.85 -0.2 879,115 - OKGIIK_04015 0.85 -1.1 879,115 - OKGIIK_04015 0.85 +1.5 879,115 - OKGIIK_04015 0.85 +1.0 879,115 - OKGIIK_04015 0.85 -1.1 879,376 + -2.0 879,377 - +0.2 879,377 - -0.0 879,408 - -1.2 879,408 - +0.1 879,453 - -2.1 879,453 - -0.6 879,453 - -1.5 879,453 - +0.2 879,453 - +0.2 879,453 - +0.1 879,453 - -0.3 879,453 - -0.5 879,453 - +0.3 879,453 - +1.1 879,453 - +0.5 879,453 - -1.0 879,453 - -0.2 879,453 - -0.1 879,453 - -0.1 879,767 + OKGIIK_04020 0.67 -1.3 879,768 - OKGIIK_04020 0.67 +1.0 879,873 + -0.8 879,874 - -1.2 879,874 - +0.6 879,874 - +0.7 879,878 + -0.4 879,879 - +0.2 879,879 - -1.1 879,884 + -2.1 879,884 + -1.8 879,884 + -1.8 879,884 + -0.1 879,885 - -1.1 879,885 - -0.8 879,932 + -1.1 879,932 + -0.1 879,932 + +0.7 879,932 + +0.5 879,932 + +0.1 879,933 - -0.9 879,933 - +1.1 879,933 - -0.1 879,933 - +0.0 879,933 - -0.1 879,933 - -1.3 879,933 - -1.6 879,933 - -2.1 879,933 - -0.8 879,933 - -1.1 879,933 - -0.8 879,933 - -1.1 879,933 - +0.3 879,933 - +1.8 879,933 - -0.3 879,935 + +0.6 879,935 + +0.2 879,936 - +0.8 879,936 - -0.6 879,936 - -0.6 879,936 - +0.3 879,936 - -0.4 879,936 - -0.2 879,936 - -0.5 879,936 - -0.4 879,936 - -0.8 879,936 - -1.0 879,936 - -0.8 879,936 - -1.4 879,936 - -0.5 879,936 - -2.4 879,936 - -0.8 879,938 + -1.6 879,969 + -2.0 879,970 - +0.6 879,970 - +0.1 879,970 - +1.2 879,970 - +0.4 879,970 - -0.1 879,970 - -0.1 879,970 - -0.4 879,992 + -1.0 879,992 + -0.5 879,993 - +0.3 879,993 - -1.0 879,993 - -0.6 879,993 - +0.5 880,023 + -0.8 880,023 + -0.0 880,023 + -1.8 880,023 + -0.9 880,023 + -0.7 880,024 - +0.4 880,024 - -0.1 880,024 - -0.0 880,024 - -0.2 880,024 - +0.7 880,024 - -1.0 880,024 - -1.8 880,024 - -2.1 880,024 - +0.1 880,735 + paaJ OKGIIK_04025 0.57 -0.9 880,735 + paaJ OKGIIK_04025 0.57 -0.3 880,735 + paaJ OKGIIK_04025 0.57 +0.5 880,735 + paaJ OKGIIK_04025 0.57 +1.6 880,735 + paaJ OKGIIK_04025 0.57 -0.1 880,735 + paaJ OKGIIK_04025 0.57 +0.0 880,735 + paaJ OKGIIK_04025 0.57 -0.5 880,735 + paaJ OKGIIK_04025 0.57 +0.7 880,735 + paaJ OKGIIK_04025 0.57 -2.2 880,735 + paaJ OKGIIK_04025 0.57 +0.6 880,735 + paaJ OKGIIK_04025 0.57 -0.4 880,735 + paaJ OKGIIK_04025 0.57 +0.6 880,735 + paaJ OKGIIK_04025 0.57 -2.7 880,735 + paaJ OKGIIK_04025 0.57 +0.3 880,735 + paaJ OKGIIK_04025 0.57 -1.1 880,735 + paaJ OKGIIK_04025 0.57 +0.9 880,735 + paaJ OKGIIK_04025 0.57 -0.6 880,735 + paaJ OKGIIK_04025 0.57 +0.8 880,735 + paaJ OKGIIK_04025 0.57 -0.7 880,735 + paaJ OKGIIK_04025 0.57 -0.8 880,735 + paaJ OKGIIK_04025 0.57 -0.1 880,736 - paaJ OKGIIK_04025 0.57 -1.1 880,736 - paaJ OKGIIK_04025 0.57 -0.8 880,736 - paaJ OKGIIK_04025 0.57 +0.4 880,736 - paaJ OKGIIK_04025 0.57 -1.6 880,736 - paaJ OKGIIK_04025 0.57 +0.9 880,736 - paaJ OKGIIK_04025 0.57 -0.8 880,736 - paaJ OKGIIK_04025 0.57 +0.1 880,736 - paaJ OKGIIK_04025 0.57 -2.0 880,736 - paaJ OKGIIK_04025 0.57 -2.9 880,736 - paaJ OKGIIK_04025 0.57 -0.8 880,736 - paaJ OKGIIK_04025 0.57 -0.3 880,736 - paaJ OKGIIK_04025 0.57 -0.1 880,736 - paaJ OKGIIK_04025 0.57 -0.1 880,736 - paaJ OKGIIK_04025 0.57 -0.7 880,736 - paaJ OKGIIK_04025 0.57 -1.6 880,783 + paaJ OKGIIK_04025 0.61 -0.1 880,783 + paaJ OKGIIK_04025 0.61 -1.6 880,784 - paaJ OKGIIK_04025 0.61 -1.4 880,784 - paaJ OKGIIK_04025 0.61 -1.2 880,784 - paaJ OKGIIK_04025 0.61 -0.6 880,837 + paaJ OKGIIK_04025 0.66 -1.1 880,850 + paaJ OKGIIK_04025 0.67 +1.3
Or see this region's nucleotide sequence