Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hmgA and ycgM are separated by 37 nucleotides ycgM and hemN are separated by 97 nucleotides
OKGIIK_00790: hmgA - homogentisate 1,2-dioxygenase, at 175,259 to 176,590
hmgA
OKGIIK_00795: ycgM - 2-keto-4-pentenoate hydratase, at 176,628 to 177,614
ycgM
OKGIIK_00800: hemN - oxygen-independent coproporphyrinogen III oxidase, at 177,712 to 179,112
hemN
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.640 kb on + strand, within hmgA at 175.640 kb on + strand, within hmgA at 175.640 kb on + strand, within hmgA at 175.640 kb on + strand, within hmgA at 175.641 kb on - strand, within hmgA at 175.676 kb on + strand, within hmgA at 175.676 kb on + strand, within hmgA at 175.676 kb on + strand, within hmgA at 175.676 kb on + strand, within hmgA at 175.676 kb on + strand, within hmgA at 175.988 kb on + strand, within hmgA at 175.988 kb on + strand, within hmgA at 175.988 kb on + strand, within hmgA at 175.988 kb on + strand, within hmgA at 175.989 kb on - strand, within hmgA at 175.989 kb on - strand, within hmgA at 175.989 kb on - strand, within hmgA at 175.989 kb on - strand, within hmgA at 176.096 kb on + strand, within hmgA at 176.096 kb on + strand, within hmgA at 176.096 kb on + strand, within hmgA at 176.096 kb on + strand, within hmgA at 176.097 kb on - strand, within hmgA at 176.097 kb on - strand, within hmgA at 176.105 kb on + strand, within hmgA at 176.106 kb on - strand, within hmgA at 176.106 kb on - strand, within hmgA at 176.106 kb on - strand, within hmgA at 176.106 kb on - strand, within hmgA at 176.106 kb on - strand, within hmgA at 176.106 kb on - strand, within hmgA at 176.111 kb on + strand, within hmgA at 176.111 kb on + strand, within hmgA at 176.111 kb on + strand, within hmgA at 176.111 kb on + strand, within hmgA at 176.111 kb on + strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.112 kb on - strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.151 kb on + strand, within hmgA at 176.152 kb on - strand, within hmgA at 176.152 kb on - strand, within hmgA at 176.152 kb on - strand, within hmgA at 176.330 kb on + strand, within hmgA at 176.330 kb on + strand, within hmgA at 176.330 kb on + strand, within hmgA at 176.330 kb on + strand, within hmgA at 176.330 kb on + strand, within hmgA at 176.331 kb on - strand, within hmgA at 176.331 kb on - strand, within hmgA at 176.546 kb on + strand at 176.546 kb on + strand at 176.546 kb on + strand at 176.546 kb on + strand at 176.546 kb on + strand at 176.547 kb on - strand at 176.547 kb on - strand at 176.547 kb on - strand at 176.547 kb on - strand at 176.547 kb on - strand at 176.547 kb on - strand at 176.547 kb on - strand at 176.549 kb on + strand at 176.549 kb on + strand at 176.550 kb on - strand at 176.865 kb on + strand, within ycgM at 176.866 kb on - strand, within ycgM at 176.889 kb on + strand, within ycgM at 176.949 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.604 kb on - strand at 177.612 kb on + strand at 177.612 kb on + strand at 177.612 kb on + strand at 177.612 kb on + strand at 177.613 kb on - strand at 177.763 kb on + strand at 177.764 kb on - strand at 177.784 kb on + strand at 177.784 kb on + strand at 177.784 kb on + strand at 177.784 kb on + strand at 177.785 kb on - strand at 177.785 kb on - strand at 177.794 kb on - strand at 177.895 kb on + strand, within hemN at 177.895 kb on + strand, within hemN at 177.895 kb on + strand, within hemN at 177.895 kb on + strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.931 kb on + strand, within hemN at 177.931 kb on + strand, within hemN at 177.931 kb on + strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.982 kb on + strand, within hemN at 177.983 kb on - strand, within hemN at 177.997 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.202 kb on - strand, within hemN at 178.202 kb on - strand, within hemN at 178.202 kb on - strand, within hemN at 178.202 kb on - strand, within hemN at 178.372 kb on + strand, within hemN at 178.372 kb on + strand, within hemN at 178.372 kb on + strand, within hemN at 178.373 kb on - strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.582 kb on + strand, within hemN at 178.582 kb on + strand, within hemN at 178.582 kb on + strand, within hemN at 178.583 kb on - strand, within hemN at 178.583 kb on - strand, within hemN at 178.583 kb on - strand, within hemN at 178.583 kb on - strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x remove 175,640 + hmgA OKGIIK_00790 0.29 +0.4 175,640 + hmgA OKGIIK_00790 0.29 -0.6 175,640 + hmgA OKGIIK_00790 0.29 -0.9 175,640 + hmgA OKGIIK_00790 0.29 -0.8 175,641 - hmgA OKGIIK_00790 0.29 -1.1 175,676 + hmgA OKGIIK_00790 0.31 +0.9 175,676 + hmgA OKGIIK_00790 0.31 -2.0 175,676 + hmgA OKGIIK_00790 0.31 -0.6 175,676 + hmgA OKGIIK_00790 0.31 -1.3 175,676 + hmgA OKGIIK_00790 0.31 -0.0 175,988 + hmgA OKGIIK_00790 0.55 -0.5 175,988 + hmgA OKGIIK_00790 0.55 +1.0 175,988 + hmgA OKGIIK_00790 0.55 -0.5 175,988 + hmgA OKGIIK_00790 0.55 +0.3 175,989 - hmgA OKGIIK_00790 0.55 -0.0 175,989 - hmgA OKGIIK_00790 0.55 +0.3 175,989 - hmgA OKGIIK_00790 0.55 -0.9 175,989 - hmgA OKGIIK_00790 0.55 -0.5 176,096 + hmgA OKGIIK_00790 0.63 -0.5 176,096 + hmgA OKGIIK_00790 0.63 +0.3 176,096 + hmgA OKGIIK_00790 0.63 +0.9 176,096 + hmgA OKGIIK_00790 0.63 -0.1 176,097 - hmgA OKGIIK_00790 0.63 +0.1 176,097 - hmgA OKGIIK_00790 0.63 +0.5 176,105 + hmgA OKGIIK_00790 0.64 -0.9 176,106 - hmgA OKGIIK_00790 0.64 -2.6 176,106 - hmgA OKGIIK_00790 0.64 +2.3 176,106 - hmgA OKGIIK_00790 0.64 -0.5 176,106 - hmgA OKGIIK_00790 0.64 +0.3 176,106 - hmgA OKGIIK_00790 0.64 -1.2 176,106 - hmgA OKGIIK_00790 0.64 +0.7 176,111 + hmgA OKGIIK_00790 0.64 -1.5 176,111 + hmgA OKGIIK_00790 0.64 +0.3 176,111 + hmgA OKGIIK_00790 0.64 +0.6 176,111 + hmgA OKGIIK_00790 0.64 +0.1 176,111 + hmgA OKGIIK_00790 0.64 +0.8 176,112 - hmgA OKGIIK_00790 0.64 +0.5 176,112 - hmgA OKGIIK_00790 0.64 -0.9 176,112 - hmgA OKGIIK_00790 0.64 -1.7 176,112 - hmgA OKGIIK_00790 0.64 +0.3 176,112 - hmgA OKGIIK_00790 0.64 +1.4 176,112 - hmgA OKGIIK_00790 0.64 +0.1 176,112 - hmgA OKGIIK_00790 0.64 +0.5 176,112 - hmgA OKGIIK_00790 0.64 -0.5 176,112 - hmgA OKGIIK_00790 0.64 +1.7 176,112 - hmgA OKGIIK_00790 0.64 -0.3 176,151 + hmgA OKGIIK_00790 0.67 -1.2 176,151 + hmgA OKGIIK_00790 0.67 +0.1 176,151 + hmgA OKGIIK_00790 0.67 -0.3 176,151 + hmgA OKGIIK_00790 0.67 +0.5 176,151 + hmgA OKGIIK_00790 0.67 -0.8 176,151 + hmgA OKGIIK_00790 0.67 +0.1 176,151 + hmgA OKGIIK_00790 0.67 -1.5 176,151 + hmgA OKGIIK_00790 0.67 +1.1 176,151 + hmgA OKGIIK_00790 0.67 -0.9 176,151 + hmgA OKGIIK_00790 0.67 -0.2 176,151 + hmgA OKGIIK_00790 0.67 -1.0 176,151 + hmgA OKGIIK_00790 0.67 +0.1 176,152 - hmgA OKGIIK_00790 0.67 -1.2 176,152 - hmgA OKGIIK_00790 0.67 -0.5 176,152 - hmgA OKGIIK_00790 0.67 +0.0 176,330 + hmgA OKGIIK_00790 0.80 -1.5 176,330 + hmgA OKGIIK_00790 0.80 +0.3 176,330 + hmgA OKGIIK_00790 0.80 -1.0 176,330 + hmgA OKGIIK_00790 0.80 +0.5 176,330 + hmgA OKGIIK_00790 0.80 +1.5 176,331 - hmgA OKGIIK_00790 0.80 -1.6 176,331 - hmgA OKGIIK_00790 0.80 +0.6 176,546 + +1.1 176,546 + -1.9 176,546 + -1.9 176,546 + -2.6 176,546 + +1.4 176,547 - +0.3 176,547 - -0.5 176,547 - -0.5 176,547 - +0.1 176,547 - -2.5 176,547 - -0.2 176,547 - -0.9 176,549 + -0.7 176,549 + -0.1 176,550 - -0.9 176,865 + ycgM OKGIIK_00795 0.24 +0.3 176,866 - ycgM OKGIIK_00795 0.24 -1.5 176,889 + ycgM OKGIIK_00795 0.26 -1.7 176,949 + ycgM OKGIIK_00795 0.33 -0.9 176,967 + ycgM OKGIIK_00795 0.34 +0.1 176,967 + ycgM OKGIIK_00795 0.34 -0.2 176,967 + ycgM OKGIIK_00795 0.34 +0.7 176,967 + ycgM OKGIIK_00795 0.34 -1.9 176,967 + ycgM OKGIIK_00795 0.34 +0.9 176,968 - ycgM OKGIIK_00795 0.34 -1.3 176,968 - ycgM OKGIIK_00795 0.34 -0.8 176,968 - ycgM OKGIIK_00795 0.34 -2.3 176,968 - ycgM OKGIIK_00795 0.34 -1.7 176,968 - ycgM OKGIIK_00795 0.34 -2.0 177,113 + ycgM OKGIIK_00795 0.49 +0.1 177,113 + ycgM OKGIIK_00795 0.49 -1.5 177,113 + ycgM OKGIIK_00795 0.49 -1.2 177,113 + ycgM OKGIIK_00795 0.49 -1.2 177,113 + ycgM OKGIIK_00795 0.49 -1.1 177,113 + ycgM OKGIIK_00795 0.49 -0.9 177,113 + ycgM OKGIIK_00795 0.49 -1.7 177,113 + ycgM OKGIIK_00795 0.49 -2.3 177,114 - ycgM OKGIIK_00795 0.49 -1.5 177,114 - ycgM OKGIIK_00795 0.49 -1.2 177,114 - ycgM OKGIIK_00795 0.49 +0.1 177,114 - ycgM OKGIIK_00795 0.49 -1.7 177,114 - ycgM OKGIIK_00795 0.49 -0.9 177,604 - +1.1 177,612 + -0.5 177,612 + -0.6 177,612 + -1.2 177,612 + +2.3 177,613 - -1.5 177,763 + -1.0 177,764 - -1.0 177,784 + +0.4 177,784 + +0.0 177,784 + -0.2 177,784 + -0.7 177,785 - -1.9 177,785 - +0.4 177,794 - -0.9 177,895 + hemN OKGIIK_00800 0.13 +1.6 177,895 + hemN OKGIIK_00800 0.13 +0.3 177,895 + hemN OKGIIK_00800 0.13 -0.1 177,895 + hemN OKGIIK_00800 0.13 +1.0 177,896 - hemN OKGIIK_00800 0.13 +0.9 177,896 - hemN OKGIIK_00800 0.13 -0.5 177,896 - hemN OKGIIK_00800 0.13 +0.4 177,896 - hemN OKGIIK_00800 0.13 +0.5 177,896 - hemN OKGIIK_00800 0.13 -0.5 177,896 - hemN OKGIIK_00800 0.13 -2.8 177,896 - hemN OKGIIK_00800 0.13 -0.8 177,896 - hemN OKGIIK_00800 0.13 -0.9 177,931 + hemN OKGIIK_00800 0.16 +0.7 177,931 + hemN OKGIIK_00800 0.16 -1.2 177,931 + hemN OKGIIK_00800 0.16 -0.1 177,932 - hemN OKGIIK_00800 0.16 +0.1 177,932 - hemN OKGIIK_00800 0.16 +0.6 177,932 - hemN OKGIIK_00800 0.16 -0.9 177,932 - hemN OKGIIK_00800 0.16 +0.4 177,932 - hemN OKGIIK_00800 0.16 -0.1 177,982 + hemN OKGIIK_00800 0.19 +0.7 177,983 - hemN OKGIIK_00800 0.19 +0.5 177,997 + hemN OKGIIK_00800 0.20 +0.1 178,201 + hemN OKGIIK_00800 0.35 -0.2 178,201 + hemN OKGIIK_00800 0.35 -3.0 178,201 + hemN OKGIIK_00800 0.35 -0.7 178,201 + hemN OKGIIK_00800 0.35 -0.4 178,201 + hemN OKGIIK_00800 0.35 +0.8 178,201 + hemN OKGIIK_00800 0.35 -0.7 178,202 - hemN OKGIIK_00800 0.35 +0.1 178,202 - hemN OKGIIK_00800 0.35 -0.5 178,202 - hemN OKGIIK_00800 0.35 +0.1 178,202 - hemN OKGIIK_00800 0.35 -0.6 178,372 + hemN OKGIIK_00800 0.47 -2.5 178,372 + hemN OKGIIK_00800 0.47 -0.7 178,372 + hemN OKGIIK_00800 0.47 -3.3 178,373 - hemN OKGIIK_00800 0.47 -2.5 178,456 + hemN OKGIIK_00800 0.53 +0.1 178,456 + hemN OKGIIK_00800 0.53 -0.1 178,456 + hemN OKGIIK_00800 0.53 +0.1 178,456 + hemN OKGIIK_00800 0.53 -0.0 178,456 + hemN OKGIIK_00800 0.53 -1.9 178,456 + hemN OKGIIK_00800 0.53 -0.0 178,456 + hemN OKGIIK_00800 0.53 -0.5 178,457 - hemN OKGIIK_00800 0.53 -0.2 178,457 - hemN OKGIIK_00800 0.53 -0.9 178,457 - hemN OKGIIK_00800 0.53 +0.5 178,457 - hemN OKGIIK_00800 0.53 +0.3 178,457 - hemN OKGIIK_00800 0.53 +0.8 178,457 - hemN OKGIIK_00800 0.53 -0.9 178,582 + hemN OKGIIK_00800 0.62 +1.6 178,582 + hemN OKGIIK_00800 0.62 +1.4 178,582 + hemN OKGIIK_00800 0.62 +0.7 178,583 - hemN OKGIIK_00800 0.62 -0.0 178,583 - hemN OKGIIK_00800 0.62 +1.7 178,583 - hemN OKGIIK_00800 0.62 -1.5 178,583 - hemN OKGIIK_00800 0.62 -1.9 178,588 + hemN OKGIIK_00800 0.63 +0.4 178,588 + hemN OKGIIK_00800 0.63 -0.6 178,588 + hemN OKGIIK_00800 0.63 +0.3 178,588 + hemN OKGIIK_00800 0.63 -0.7 178,588 + hemN OKGIIK_00800 0.63 -1.0 178,588 + hemN OKGIIK_00800 0.63 +0.4 178,588 + hemN OKGIIK_00800 0.63 -1.5 178,589 - hemN OKGIIK_00800 0.63 +0.3 178,589 - hemN OKGIIK_00800 0.63 -0.9 178,589 - hemN OKGIIK_00800 0.63 +1.1 178,589 - hemN OKGIIK_00800 0.63 -0.1 178,589 - hemN OKGIIK_00800 0.63 -0.3 178,589 - hemN OKGIIK_00800 0.63 +0.1 178,589 - hemN OKGIIK_00800 0.63 -1.1 178,589 - hemN OKGIIK_00800 0.63 -1.9 178,589 - hemN OKGIIK_00800 0.63 -1.0
Or see this region's nucleotide sequence