Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF997 and GFF998 are separated by 295 nucleotides GFF998 and GFF999 are separated by 76 nucleotides GFF999 and GFF1000 are separated by 33 nucleotides
GFF997 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 336,085 to 336,783
GFF997
GFF998 - HTH-type transcriptional regulator CynR, at 337,079 to 338,029
GFF998
GFF999 - hypothetical protein, at 338,106 to 338,747
GFF999
GFF1000 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 338,781 to 339,863
GFF1000
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.086 kb on + strand at 336.086 kb on + strand at 336.149 kb on + strand at 336.149 kb on + strand at 336.149 kb on + strand at 336.150 kb on - strand at 336.150 kb on - strand at 336.150 kb on - strand at 336.354 kb on - strand, within GFF997 at 336.546 kb on - strand, within GFF997 at 336.752 kb on + strand at 336.753 kb on - strand at 336.758 kb on + strand at 336.758 kb on + strand at 336.758 kb on + strand at 336.759 kb on - strand at 336.759 kb on - strand at 336.759 kb on - strand at 336.783 kb on + strand at 336.783 kb on + strand at 336.783 kb on + strand at 336.784 kb on - strand at 336.796 kb on + strand at 336.796 kb on + strand at 336.799 kb on + strand at 336.800 kb on - strand at 336.800 kb on - strand at 336.800 kb on - strand at 336.852 kb on - strand at 337.559 kb on + strand, within GFF998 at 337.560 kb on - strand, within GFF998 at 337.560 kb on - strand, within GFF998 at 338.047 kb on + strand at 338.048 kb on - strand at 338.048 kb on - strand at 338.107 kb on + strand at 338.131 kb on + strand at 338.284 kb on + strand, within GFF999 at 338.284 kb on + strand, within GFF999 at 338.284 kb on + strand, within GFF999 at 338.285 kb on - strand, within GFF999 at 338.285 kb on - strand, within GFF999 at 338.441 kb on + strand, within GFF999 at 338.442 kb on - strand, within GFF999 at 338.442 kb on - strand, within GFF999 at 338.532 kb on + strand, within GFF999 at 338.578 kb on + strand, within GFF999 at 338.605 kb on + strand, within GFF999 at 338.680 kb on - strand, within GFF999 at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.742 kb on - strand at 338.995 kb on + strand, within GFF1000 at 338.996 kb on - strand, within GFF1000 at 338.996 kb on - strand, within GFF1000 at 338.996 kb on - strand, within GFF1000
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 336,086 + +0.3 336,086 + +0.2 336,149 + +0.3 336,149 + -0.5 336,149 + +0.6 336,150 - +1.7 336,150 - -2.2 336,150 - -0.3 336,354 - GFF997 0.38 +1.2 336,546 - GFF997 0.66 -0.4 336,752 + +0.5 336,753 - -0.1 336,758 + +1.2 336,758 + -0.5 336,758 + +0.2 336,759 - +0.0 336,759 - -0.0 336,759 - +0.2 336,783 + +0.2 336,783 + -1.3 336,783 + +0.2 336,784 - +0.2 336,796 + -0.6 336,796 + +0.5 336,799 + +0.8 336,800 - -0.9 336,800 - +1.1 336,800 - -0.5 336,852 - -0.1 337,559 + GFF998 0.50 +0.6 337,560 - GFF998 0.51 +0.6 337,560 - GFF998 0.51 -0.4 338,047 + +0.4 338,048 - +0.0 338,048 - -0.1 338,107 + -0.2 338,131 + +0.2 338,284 + GFF999 0.28 +0.7 338,284 + GFF999 0.28 -0.2 338,284 + GFF999 0.28 -0.0 338,285 - GFF999 0.28 -0.6 338,285 - GFF999 0.28 +0.1 338,441 + GFF999 0.52 -0.2 338,442 - GFF999 0.52 +0.5 338,442 - GFF999 0.52 +0.0 338,532 + GFF999 0.66 -0.0 338,578 + GFF999 0.74 +1.8 338,605 + GFF999 0.78 -2.5 338,680 - GFF999 0.89 -0.6 338,710 + -0.4 338,710 + -0.5 338,710 + -0.0 338,710 + -0.3 338,710 + +0.5 338,710 + -0.8 338,710 + -1.0 338,710 + -0.1 338,711 - +0.8 338,711 - +1.6 338,711 - -0.5 338,711 - +0.6 338,711 - -0.3 338,711 - -0.1 338,711 - -0.0 338,741 + +0.4 338,741 + -0.3 338,741 + +0.1 338,741 + -0.5 338,741 + +0.0 338,742 - +0.1 338,995 + GFF1000 0.20 -0.5 338,996 - GFF1000 0.20 +0.2 338,996 - GFF1000 0.20 -0.2 338,996 - GFF1000 0.20 -2.1
Or see this region's nucleotide sequence