Strain Fitness in Pseudomonas sp. DMC3 around GFF989

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF988 and GFF989 are separated by 54 nucleotidesGFF989 and GFF990 are separated by 16 nucleotides GFF988 - Putrescine importer PuuP, at 327,371 to 328,720 GFF988 GFF989 - hypothetical protein, at 328,775 to 329,494 GFF989 GFF990 - Glutamine synthetase, at 329,511 to 330,842 GFF990 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 327.824 kb on + strand, within GFF988at 327.906 kb on + strand, within GFF988at 327.972 kb on - strand, within GFF988at 327.972 kb on - strand, within GFF988at 328.149 kb on + strand, within GFF988at 328.149 kb on + strand, within GFF988at 328.209 kb on + strand, within GFF988at 328.210 kb on - strand, within GFF988at 328.354 kb on - strand, within GFF988at 328.381 kb on - strand, within GFF988at 328.386 kb on + strand, within GFF988at 328.386 kb on + strand, within GFF988at 328.386 kb on + strand, within GFF988at 328.386 kb on + strand, within GFF988at 328.387 kb on - strand, within GFF988at 328.387 kb on - strand, within GFF988at 328.410 kb on + strand, within GFF988at 328.411 kb on - strand, within GFF988at 328.411 kb on - strand, within GFF988at 328.411 kb on - strand, within GFF988at 328.456 kb on + strand, within GFF988at 328.456 kb on + strand, within GFF988at 328.457 kb on - strand, within GFF988at 328.473 kb on + strand, within GFF988at 328.473 kb on + strand, within GFF988at 328.474 kb on - strand, within GFF988at 328.474 kb on - strand, within GFF988at 328.481 kb on + strand, within GFF988at 328.482 kb on - strand, within GFF988at 328.482 kb on - strand, within GFF988at 328.563 kb on + strand, within GFF988at 328.564 kb on - strand, within GFF988at 328.564 kb on - strand, within GFF988at 328.602 kb on + strandat 328.608 kb on + strandat 328.608 kb on + strandat 328.609 kb on - strandat 328.650 kb on + strandat 328.650 kb on + strandat 328.650 kb on + strandat 328.678 kb on + strandat 328.679 kb on - strandat 328.698 kb on + strandat 328.754 kb on + strandat 328.755 kb on - strandat 328.755 kb on - strandat 328.762 kb on - strandat 328.776 kb on + strandat 328.794 kb on + strandat 328.794 kb on + strandat 328.794 kb on + strandat 328.794 kb on + strandat 328.986 kb on + strand, within GFF989at 328.986 kb on + strand, within GFF989at 328.987 kb on - strand, within GFF989at 328.987 kb on - strand, within GFF989at 328.987 kb on - strand, within GFF989at 328.987 kb on - strand, within GFF989at 328.987 kb on - strand, within GFF989at 328.987 kb on - strand, within GFF989at 329.040 kb on + strand, within GFF989at 329.040 kb on + strand, within GFF989at 329.044 kb on - strand, within GFF989at 329.277 kb on + strand, within GFF989at 329.278 kb on - strand, within GFF989at 329.278 kb on - strand, within GFF989at 329.357 kb on - strand, within GFF989at 329.357 kb on - strand, within GFF989at 329.413 kb on - strand, within GFF989at 329.475 kb on + strandat 329.475 kb on + strandat 329.476 kb on - strandat 329.490 kb on + strandat 329.491 kb on - strandat 329.516 kb on - strandat 329.527 kb on + strandat 329.527 kb on + strandat 329.527 kb on + strandat 329.527 kb on + strandat 329.528 kb on - strandat 329.528 kb on - strandat 329.528 kb on - strandat 329.528 kb on - strandat 329.593 kb on + strandat 329.596 kb on + strandat 329.596 kb on + strandat 329.596 kb on + strandat 329.596 kb on + strandat 329.596 kb on + strandat 329.596 kb on + strandat 329.597 kb on - strandat 329.597 kb on - strandat 329.944 kb on + strand, within GFF990at 329.944 kb on + strand, within GFF990at 329.945 kb on - strand, within GFF990at 329.945 kb on - strand, within GFF990at 329.981 kb on - strand, within GFF990at 329.981 kb on - strand, within GFF990at 330.302 kb on - strand, within GFF990at 330.419 kb on + strand, within GFF990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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327,824 + GFF988 0.34 +0.6
327,906 + GFF988 0.40 -0.2
327,972 - GFF988 0.45 -0.1
327,972 - GFF988 0.45 +0.1
328,149 + GFF988 0.58 -0.7
328,149 + GFF988 0.58 +0.0
328,209 + GFF988 0.62 -0.4
328,210 - GFF988 0.62 -0.6
328,354 - GFF988 0.73 -1.0
328,381 - GFF988 0.75 -0.0
328,386 + GFF988 0.75 +0.4
328,386 + GFF988 0.75 +1.2
328,386 + GFF988 0.75 +0.3
328,386 + GFF988 0.75 -0.4
328,387 - GFF988 0.75 +1.8
328,387 - GFF988 0.75 -0.3
328,410 + GFF988 0.77 +0.5
328,411 - GFF988 0.77 +0.4
328,411 - GFF988 0.77 +0.9
328,411 - GFF988 0.77 -0.3
328,456 + GFF988 0.80 +0.0
328,456 + GFF988 0.80 -0.0
328,457 - GFF988 0.80 -0.8
328,473 + GFF988 0.82 +0.5
328,473 + GFF988 0.82 -0.4
328,474 - GFF988 0.82 +1.1
328,474 - GFF988 0.82 -0.7
328,481 + GFF988 0.82 +1.3
328,482 - GFF988 0.82 -0.2
328,482 - GFF988 0.82 -0.3
328,563 + GFF988 0.88 -0.0
328,564 - GFF988 0.88 -2.1
328,564 - GFF988 0.88 +0.4
328,602 + -1.3
328,608 + -1.0
328,608 + +0.2
328,609 - -0.4
328,650 + +0.2
328,650 + +0.6
328,650 + -0.0
328,678 + +0.9
328,679 - -0.9
328,698 + +0.2
328,754 + +0.6
328,755 - +0.5
328,755 - +0.3
328,762 - -0.1
328,776 + +0.1
328,794 + +0.5
328,794 + +0.2
328,794 + +0.9
328,794 + -0.5
328,986 + GFF989 0.29 +0.8
328,986 + GFF989 0.29 +1.1
328,987 - GFF989 0.29 -0.8
328,987 - GFF989 0.29 +0.5
328,987 - GFF989 0.29 +0.8
328,987 - GFF989 0.29 +0.5
328,987 - GFF989 0.29 +1.2
328,987 - GFF989 0.29 +1.4
329,040 + GFF989 0.37 -1.8
329,040 + GFF989 0.37 +0.3
329,044 - GFF989 0.37 +1.2
329,277 + GFF989 0.70 +0.4
329,278 - GFF989 0.70 +0.4
329,278 - GFF989 0.70 +0.8
329,357 - GFF989 0.81 +1.7
329,357 - GFF989 0.81 -1.3
329,413 - GFF989 0.89 +0.1
329,475 + -0.2
329,475 + +1.2
329,476 - +0.4
329,490 + -1.8
329,491 - +0.8
329,516 - -0.2
329,527 + -0.3
329,527 + -1.0
329,527 + -2.0
329,527 + +0.4
329,528 - -0.3
329,528 - -0.6
329,528 - -0.3
329,528 - +0.3
329,593 + +0.3
329,596 + -0.6
329,596 + +1.8
329,596 + +1.4
329,596 + -0.8
329,596 + -1.1
329,596 + +0.5
329,597 - +0.5
329,597 - -0.5
329,944 + GFF990 0.33 +1.7
329,944 + GFF990 0.33 +0.7
329,945 - GFF990 0.33 -0.5
329,945 - GFF990 0.33 -0.6
329,981 - GFF990 0.35 +0.3
329,981 - GFF990 0.35 -0.8
330,302 - GFF990 0.59 +0.2
330,419 + GFF990 0.68 +1.2

Or see this region's nucleotide sequence