Strain Fitness in Pseudomonas sp. DMC3 around GFF926

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF925 and GFF926 are separated by 113 nucleotidesGFF926 and GFF927 are separated by 61 nucleotides GFF925 - hypothetical protein, at 254,958 to 255,902 GFF925 GFF926 - 2-haloacrylate reductase, at 256,016 to 257,014 GFF926 GFF927 - hypothetical protein, at 257,076 to 258,275 GFF927 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 255.197 kb on + strand, within GFF925at 255.198 kb on - strand, within GFF925at 255.198 kb on - strand, within GFF925at 255.198 kb on - strand, within GFF925at 255.198 kb on - strand, within GFF925at 255.198 kb on - strand, within GFF925at 255.418 kb on + strand, within GFF925at 255.419 kb on - strand, within GFF925at 255.419 kb on - strand, within GFF925at 255.419 kb on - strand, within GFF925at 255.487 kb on + strand, within GFF925at 255.487 kb on + strand, within GFF925at 255.507 kb on + strand, within GFF925at 255.507 kb on + strand, within GFF925at 255.507 kb on + strand, within GFF925at 255.507 kb on + strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.508 kb on - strand, within GFF925at 255.518 kb on + strand, within GFF925at 255.518 kb on + strand, within GFF925at 255.518 kb on + strand, within GFF925at 255.519 kb on - strand, within GFF925at 255.519 kb on - strand, within GFF925at 255.519 kb on - strand, within GFF925at 255.519 kb on - strand, within GFF925at 255.519 kb on - strand, within GFF925at 255.573 kb on + strand, within GFF925at 255.582 kb on + strand, within GFF925at 255.582 kb on + strand, within GFF925at 255.582 kb on + strand, within GFF925at 255.583 kb on - strand, within GFF925at 255.628 kb on + strand, within GFF925at 255.903 kb on + strandat 255.903 kb on + strandat 255.967 kb on + strandat 255.997 kb on + strandat 255.998 kb on - strandat 255.998 kb on - strandat 256.206 kb on - strand, within GFF926at 256.342 kb on - strand, within GFF926at 256.342 kb on - strand, within GFF926at 256.428 kb on + strand, within GFF926at 256.708 kb on - strand, within GFF926at 256.955 kb on + strandat 256.956 kb on - strandat 256.956 kb on - strandat 256.956 kb on - strandat 257.041 kb on + strandat 257.041 kb on + strandat 257.041 kb on + strandat 257.041 kb on + strandat 257.042 kb on - strandat 257.433 kb on + strand, within GFF927at 257.434 kb on - strand, within GFF927at 257.488 kb on + strand, within GFF927at 257.489 kb on - strand, within GFF927at 257.489 kb on - strand, within GFF927at 257.521 kb on + strand, within GFF927at 257.521 kb on + strand, within GFF927at 257.521 kb on + strand, within GFF927at 257.521 kb on + strand, within GFF927at 257.521 kb on + strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.522 kb on - strand, within GFF927at 257.574 kb on + strand, within GFF927at 257.578 kb on + strand, within GFF927at 257.579 kb on - strand, within GFF927at 257.579 kb on - strand, within GFF927at 257.640 kb on + strand, within GFF927at 257.641 kb on - strand, within GFF927at 257.641 kb on - strand, within GFF927at 257.648 kb on - strand, within GFF927

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
255,197 + GFF925 0.25 -1.4
255,198 - GFF925 0.25 -1.6
255,198 - GFF925 0.25 +0.6
255,198 - GFF925 0.25 -0.9
255,198 - GFF925 0.25 -0.7
255,198 - GFF925 0.25 -0.3
255,418 + GFF925 0.49 -1.7
255,419 - GFF925 0.49 -0.7
255,419 - GFF925 0.49 +1.7
255,419 - GFF925 0.49 -2.3
255,487 + GFF925 0.56 -0.9
255,487 + GFF925 0.56 +0.7
255,507 + GFF925 0.58 +0.4
255,507 + GFF925 0.58 +0.0
255,507 + GFF925 0.58 -0.3
255,507 + GFF925 0.58 -1.6
255,508 - GFF925 0.58 -1.3
255,508 - GFF925 0.58 -0.6
255,508 - GFF925 0.58 +0.4
255,508 - GFF925 0.58 -0.8
255,508 - GFF925 0.58 +1.0
255,508 - GFF925 0.58 -0.7
255,508 - GFF925 0.58 -0.8
255,508 - GFF925 0.58 -0.3
255,508 - GFF925 0.58 +0.1
255,508 - GFF925 0.58 +0.3
255,508 - GFF925 0.58 +0.8
255,518 + GFF925 0.59 +0.8
255,518 + GFF925 0.59 -1.7
255,518 + GFF925 0.59 +0.0
255,519 - GFF925 0.59 +0.3
255,519 - GFF925 0.59 -0.0
255,519 - GFF925 0.59 +0.0
255,519 - GFF925 0.59 -0.7
255,519 - GFF925 0.59 +0.6
255,573 + GFF925 0.65 -0.2
255,582 + GFF925 0.66 +0.4
255,582 + GFF925 0.66 +0.6
255,582 + GFF925 0.66 +0.7
255,583 - GFF925 0.66 +1.6
255,628 + GFF925 0.71 +0.0
255,903 + +0.2
255,903 + -0.6
255,967 + +0.3
255,997 + +0.5
255,998 - +0.8
255,998 - -1.7
256,206 - GFF926 0.19 +0.7
256,342 - GFF926 0.33 +0.9
256,342 - GFF926 0.33 +0.9
256,428 + GFF926 0.41 +1.1
256,708 - GFF926 0.69 +0.4
256,955 + -1.4
256,956 - +0.8
256,956 - -0.2
256,956 - -0.2
257,041 + +0.2
257,041 + +0.6
257,041 + +0.7
257,041 + +0.3
257,042 - +0.3
257,433 + GFF927 0.30 -0.3
257,434 - GFF927 0.30 +0.0
257,488 + GFF927 0.34 -0.1
257,489 - GFF927 0.34 +0.1
257,489 - GFF927 0.34 -0.1
257,521 + GFF927 0.37 +2.0
257,521 + GFF927 0.37 +0.1
257,521 + GFF927 0.37 -0.6
257,521 + GFF927 0.37 +0.5
257,521 + GFF927 0.37 -0.3
257,522 - GFF927 0.37 +0.4
257,522 - GFF927 0.37 -0.0
257,522 - GFF927 0.37 +0.7
257,522 - GFF927 0.37 -0.2
257,522 - GFF927 0.37 +1.1
257,522 - GFF927 0.37 -0.4
257,522 - GFF927 0.37 -0.4
257,522 - GFF927 0.37 +0.4
257,574 + GFF927 0.41 -0.8
257,578 + GFF927 0.42 +0.6
257,579 - GFF927 0.42 -0.0
257,579 - GFF927 0.42 -0.8
257,640 + GFF927 0.47 -0.5
257,641 - GFF927 0.47 +0.2
257,641 - GFF927 0.47 -0.5
257,648 - GFF927 0.48 -0.2

Or see this region's nucleotide sequence