Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF904 and GFF905 are separated by 130 nucleotides GFF905 and GFF906 are separated by 166 nucleotides GFF906 and GFF907 are separated by 64 nucleotides GFF907 and GFF908 are separated by 290 nucleotides GFF908 and GFF909 are separated by 370 nucleotides
GFF904 - hypothetical protein, at 238,377 to 238,577
GFF904
GFF905 - hypothetical protein, at 238,708 to 239,010
GFF905
GFF906 - hypothetical protein, at 239,177 to 239,494
GFF906
GFF907 - Cold shock protein CapB, at 239,559 to 239,771
GFF907
GFF908 - hypothetical protein, at 240,062 to 240,364
GFF908
GFF909 - Threonine--tRNA ligase, at 240,735 to 242,657
GFF909
Position (kb) 239
240 Strain fitness (log2 ratio) -2
-1
0
1 at 238.566 kb on + strand at 238.566 kb on + strand at 238.567 kb on - strand at 238.567 kb on - strand at 238.615 kb on + strand at 238.615 kb on + strand at 238.648 kb on + strand at 238.649 kb on - strand at 238.649 kb on - strand at 238.692 kb on + strand at 238.692 kb on + strand at 238.725 kb on + strand at 238.787 kb on + strand, within GFF905 at 238.787 kb on + strand, within GFF905 at 238.787 kb on + strand, within GFF905 at 238.787 kb on + strand, within GFF905 at 238.787 kb on + strand, within GFF905 at 238.787 kb on + strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.788 kb on - strand, within GFF905 at 238.825 kb on + strand, within GFF905 at 238.825 kb on + strand, within GFF905 at 238.903 kb on + strand, within GFF905 at 238.903 kb on + strand, within GFF905 at 238.903 kb on + strand, within GFF905 at 238.904 kb on - strand, within GFF905 at 238.987 kb on + strand at 238.987 kb on + strand at 238.988 kb on - strand at 238.988 kb on - strand at 238.993 kb on + strand at 238.993 kb on + strand at 238.993 kb on + strand at 238.993 kb on + strand at 238.993 kb on + strand at 238.993 kb on + strand at 238.994 kb on - strand at 238.994 kb on - strand at 238.994 kb on - strand at 238.994 kb on - strand at 238.994 kb on - strand at 238.994 kb on - strand at 239.005 kb on + strand at 239.005 kb on + strand at 239.006 kb on - strand at 239.006 kb on - strand at 239.017 kb on + strand at 239.018 kb on - strand at 239.018 kb on - strand at 239.020 kb on + strand at 239.020 kb on + strand at 239.152 kb on - strand at 239.512 kb on + strand at 239.513 kb on - strand at 239.513 kb on - strand at 239.513 kb on - strand at 239.588 kb on + strand, within GFF907 at 239.589 kb on - strand, within GFF907 at 239.676 kb on + strand, within GFF907 at 239.676 kb on + strand, within GFF907 at 239.677 kb on - strand, within GFF907 at 239.765 kb on + strand at 239.766 kb on - strand at 239.776 kb on + strand at 239.776 kb on + strand at 239.776 kb on + strand at 239.776 kb on + strand at 239.776 kb on + strand at 239.776 kb on + strand at 239.776 kb on + strand at 239.777 kb on - strand at 239.777 kb on - strand at 239.777 kb on - strand at 239.777 kb on - strand at 239.792 kb on - strand at 239.792 kb on - strand at 239.792 kb on - strand at 239.792 kb on - strand at 239.792 kb on - strand at 239.794 kb on - strand at 239.794 kb on - strand at 239.794 kb on - strand at 239.802 kb on + strand at 239.803 kb on - strand at 239.806 kb on - strand at 239.806 kb on - strand at 239.806 kb on - strand at 239.806 kb on - strand at 239.840 kb on + strand at 239.841 kb on - strand at 239.846 kb on - strand at 239.846 kb on - strand at 239.846 kb on - strand at 239.846 kb on - strand at 239.918 kb on + strand at 239.961 kb on - strand at 239.992 kb on + strand at 239.993 kb on - strand at 240.047 kb on + strand at 240.048 kb on - strand at 240.048 kb on - strand at 240.048 kb on - strand at 240.048 kb on - strand at 240.048 kb on - strand at 240.080 kb on - strand at 240.266 kb on - strand, within GFF908 at 240.266 kb on - strand, within GFF908 at 240.266 kb on - strand, within GFF908 at 240.267 kb on + strand, within GFF908 at 240.267 kb on + strand, within GFF908 at 240.267 kb on + strand, within GFF908 at 240.267 kb on + strand, within GFF908 at 240.267 kb on + strand, within GFF908 at 240.268 kb on - strand, within GFF908 at 240.268 kb on - strand, within GFF908 at 240.268 kb on - strand, within GFF908 at 240.348 kb on - strand at 240.397 kb on + strand at 240.397 kb on + strand at 240.397 kb on + strand at 240.398 kb on - strand at 240.398 kb on - strand at 240.440 kb on - strand at 240.497 kb on + strand at 240.497 kb on + strand at 240.497 kb on + strand at 240.497 kb on + strand at 240.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 238,566 + +1.0 238,566 + -0.3 238,567 - -0.3 238,567 - +0.1 238,615 + +1.0 238,615 + +0.6 238,648 + -0.9 238,649 - -0.9 238,649 - +0.4 238,692 + -0.1 238,692 + -0.5 238,725 + -0.3 238,787 + GFF905 0.26 +1.5 238,787 + GFF905 0.26 -0.4 238,787 + GFF905 0.26 -1.3 238,787 + GFF905 0.26 +0.2 238,787 + GFF905 0.26 +0.5 238,787 + GFF905 0.26 -0.8 238,788 - GFF905 0.26 +1.0 238,788 - GFF905 0.26 -1.0 238,788 - GFF905 0.26 -0.9 238,788 - GFF905 0.26 -1.9 238,788 - GFF905 0.26 -0.9 238,788 - GFF905 0.26 +0.0 238,788 - GFF905 0.26 -0.9 238,788 - GFF905 0.26 -0.5 238,825 + GFF905 0.39 -0.9 238,825 + GFF905 0.39 -0.8 238,903 + GFF905 0.64 -0.1 238,903 + GFF905 0.64 +0.7 238,903 + GFF905 0.64 -0.6 238,904 - GFF905 0.65 -0.8 238,987 + -0.3 238,987 + -0.0 238,988 - +1.0 238,988 - -0.0 238,993 + -0.9 238,993 + +0.2 238,993 + -0.5 238,993 + -0.5 238,993 + -0.0 238,993 + +0.7 238,994 - -1.0 238,994 - -0.8 238,994 - -0.2 238,994 - +0.4 238,994 - +1.2 238,994 - -0.9 239,005 + -0.3 239,005 + -0.3 239,006 - -0.7 239,006 - +1.1 239,017 + -0.6 239,018 - -0.0 239,018 - +0.0 239,020 + -0.6 239,020 + -0.3 239,152 - -1.6 239,512 + -0.4 239,513 - -0.7 239,513 - +0.8 239,513 - -0.5 239,588 + GFF907 0.14 -0.8 239,589 - GFF907 0.14 +0.5 239,676 + GFF907 0.55 +0.3 239,676 + GFF907 0.55 +1.1 239,677 - GFF907 0.55 +0.1 239,765 + +1.1 239,766 - +0.2 239,776 + +0.6 239,776 + -0.2 239,776 + -0.4 239,776 + -0.3 239,776 + +0.2 239,776 + -0.3 239,776 + +0.7 239,777 - -0.4 239,777 - -0.0 239,777 - +0.5 239,777 - +1.4 239,792 - -0.1 239,792 - -0.1 239,792 - +0.5 239,792 - +0.2 239,792 - +0.2 239,794 - -1.1 239,794 - -0.2 239,794 - +1.6 239,802 + -1.2 239,803 - -0.8 239,806 - +0.9 239,806 - +1.7 239,806 - +0.8 239,806 - +0.5 239,840 + +0.1 239,841 - -0.0 239,846 - -0.6 239,846 - +0.9 239,846 - +1.4 239,846 - +0.4 239,918 + -0.3 239,961 - -0.1 239,992 + +0.1 239,993 - -0.4 240,047 + -0.0 240,048 - -0.3 240,048 - -0.5 240,048 - -0.3 240,048 - +0.4 240,048 - -1.1 240,080 - -0.1 240,266 - GFF908 0.67 +0.5 240,266 - GFF908 0.67 -0.5 240,266 - GFF908 0.67 -0.8 240,267 + GFF908 0.68 -0.2 240,267 + GFF908 0.68 -0.9 240,267 + GFF908 0.68 -1.3 240,267 + GFF908 0.68 -0.0 240,267 + GFF908 0.68 +0.4 240,268 - GFF908 0.68 -0.6 240,268 - GFF908 0.68 -0.4 240,268 - GFF908 0.68 -0.1 240,348 - -0.3 240,397 + +1.3 240,397 + -0.9 240,397 + +0.2 240,398 - -0.2 240,398 - +0.3 240,440 - -0.3 240,497 + +0.7 240,497 + +0.3 240,497 + +0.0 240,497 + +0.8 240,632 + -0.7
Or see this region's nucleotide sequence