Strain Fitness in Pseudomonas sp. DMC3 around GFF901

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF900 and GFF901 are separated by 24 nucleotidesGFF901 and GFF902 overlap by 4 nucleotidesGFF902 and GFF903 are separated by 31 nucleotides GFF900 - HTH-type transcriptional repressor PurR, at 234,921 to 235,940 GFF900 GFF901 - Ribokinase, at 235,965 to 236,882 GFF901 GFF902 - D-ribose pyranase, at 236,879 to 237,283 GFF902 GFF903 - Pyrimidine-specific ribonucleoside hydrolase RihA, at 237,315 to 238,343 GFF903 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 235.053 kb on + strand, within GFF900at 235.053 kb on + strand, within GFF900at 235.122 kb on - strand, within GFF900at 235.122 kb on - strand, within GFF900at 235.137 kb on + strand, within GFF900at 235.137 kb on + strand, within GFF900at 235.138 kb on - strand, within GFF900at 235.138 kb on - strand, within GFF900at 235.205 kb on + strand, within GFF900at 235.205 kb on + strand, within GFF900at 235.206 kb on - strand, within GFF900at 235.206 kb on - strand, within GFF900at 235.239 kb on + strand, within GFF900at 235.240 kb on - strand, within GFF900at 235.240 kb on - strand, within GFF900at 235.240 kb on - strand, within GFF900at 235.372 kb on + strand, within GFF900at 235.372 kb on + strand, within GFF900at 235.372 kb on + strand, within GFF900at 235.372 kb on + strand, within GFF900at 235.372 kb on + strand, within GFF900at 235.372 kb on + strand, within GFF900at 235.414 kb on - strand, within GFF900at 235.414 kb on - strand, within GFF900at 235.594 kb on - strand, within GFF900at 235.594 kb on - strand, within GFF900at 235.755 kb on + strand, within GFF900at 235.755 kb on + strand, within GFF900at 235.756 kb on - strand, within GFF900at 235.756 kb on - strand, within GFF900at 235.756 kb on - strand, within GFF900at 235.756 kb on - strand, within GFF900at 235.870 kb on + strandat 235.883 kb on + strandat 235.884 kb on - strandat 235.956 kb on + strandat 235.956 kb on + strandat 235.956 kb on + strandat 235.956 kb on + strandat 235.957 kb on - strandat 235.957 kb on - strandat 235.957 kb on - strandat 235.957 kb on - strandat 235.957 kb on - strandat 235.964 kb on + strandat 235.964 kb on + strandat 235.964 kb on + strandat 235.964 kb on + strandat 235.964 kb on + strandat 235.965 kb on - strandat 235.965 kb on - strandat 235.965 kb on - strandat 235.965 kb on - strandat 235.965 kb on - strandat 235.965 kb on - strandat 235.965 kb on - strandat 235.984 kb on + strandat 235.984 kb on + strandat 235.985 kb on - strandat 235.985 kb on - strandat 235.987 kb on + strandat 235.987 kb on + strandat 235.987 kb on + strandat 235.987 kb on + strandat 236.164 kb on - strand, within GFF901at 236.164 kb on - strand, within GFF901at 236.350 kb on + strand, within GFF901at 236.351 kb on - strand, within GFF901at 236.351 kb on - strand, within GFF901at 236.505 kb on + strand, within GFF901at 236.516 kb on + strand, within GFF901at 236.860 kb on + strandat 236.861 kb on - strandat 237.195 kb on + strand, within GFF902at 237.196 kb on - strand, within GFF902at 237.227 kb on - strand, within GFF902at 237.227 kb on - strand, within GFF902at 237.274 kb on + strandat 237.275 kb on - strandat 237.275 kb on - strandat 237.315 kb on - strandat 237.315 kb on - strandat 237.315 kb on - strandat 237.324 kb on + strandat 237.324 kb on + strandat 237.325 kb on - strandat 237.325 kb on - strandat 237.325 kb on - strandat 237.507 kb on - strand, within GFF903at 237.594 kb on + strand, within GFF903at 237.633 kb on + strand, within GFF903at 237.634 kb on - strand, within GFF903at 237.710 kb on + strand, within GFF903at 237.710 kb on + strand, within GFF903at 237.711 kb on - strand, within GFF903at 237.711 kb on - strand, within GFF903at 237.724 kb on - strand, within GFF903at 237.724 kb on - strand, within GFF903at 237.724 kb on - strand, within GFF903at 237.724 kb on - strand, within GFF903at 237.741 kb on - strand, within GFF903at 237.741 kb on - strand, within GFF903

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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235,053 + GFF900 0.13 -1.9
235,053 + GFF900 0.13 -0.5
235,122 - GFF900 0.20 -0.8
235,122 - GFF900 0.20 +0.2
235,137 + GFF900 0.21 +0.4
235,137 + GFF900 0.21 +2.0
235,138 - GFF900 0.21 +0.8
235,138 - GFF900 0.21 -0.1
235,205 + GFF900 0.28 +0.2
235,205 + GFF900 0.28 -0.3
235,206 - GFF900 0.28 -1.1
235,206 - GFF900 0.28 +0.5
235,239 + GFF900 0.31 -0.9
235,240 - GFF900 0.31 -0.3
235,240 - GFF900 0.31 +0.8
235,240 - GFF900 0.31 -1.3
235,372 + GFF900 0.44 +0.5
235,372 + GFF900 0.44 +0.6
235,372 + GFF900 0.44 -0.2
235,372 + GFF900 0.44 -0.8
235,372 + GFF900 0.44 +0.1
235,372 + GFF900 0.44 +1.8
235,414 - GFF900 0.48 -0.3
235,414 - GFF900 0.48 -0.3
235,594 - GFF900 0.66 -0.1
235,594 - GFF900 0.66 +0.5
235,755 + GFF900 0.82 +0.5
235,755 + GFF900 0.82 -0.8
235,756 - GFF900 0.82 -0.9
235,756 - GFF900 0.82 +1.2
235,756 - GFF900 0.82 -0.1
235,756 - GFF900 0.82 -0.0
235,870 + -0.3
235,883 + +0.3
235,884 - -1.6
235,956 + -0.1
235,956 + -0.2
235,956 + -1.6
235,956 + +0.2
235,957 - +0.1
235,957 - +0.3
235,957 - +1.2
235,957 - +0.4
235,957 - -0.8
235,964 + +1.0
235,964 + -1.3
235,964 + -0.3
235,964 + -0.3
235,964 + -0.3
235,965 - -1.6
235,965 - +1.6
235,965 - +1.2
235,965 - -0.1
235,965 - -1.6
235,965 - +0.5
235,965 - +0.2
235,984 + +0.6
235,984 + +0.2
235,985 - +0.2
235,985 - +0.1
235,987 + +0.4
235,987 + -0.4
235,987 + +0.9
235,987 + +0.4
236,164 - GFF901 0.22 -0.5
236,164 - GFF901 0.22 +1.2
236,350 + GFF901 0.42 +1.8
236,351 - GFF901 0.42 +0.2
236,351 - GFF901 0.42 +0.6
236,505 + GFF901 0.59 +0.7
236,516 + GFF901 0.60 -0.4
236,860 + -1.4
236,861 - -0.3
237,195 + GFF902 0.78 -0.7
237,196 - GFF902 0.78 -0.1
237,227 - GFF902 0.86 +1.1
237,227 - GFF902 0.86 -0.1
237,274 + -0.9
237,275 - -1.1
237,275 - +0.3
237,315 - -0.0
237,315 - +0.7
237,315 - +0.5
237,324 + +0.5
237,324 + +0.3
237,325 - -0.1
237,325 - -0.7
237,325 - -0.7
237,507 - GFF903 0.19 +0.2
237,594 + GFF903 0.27 +0.3
237,633 + GFF903 0.31 +1.0
237,634 - GFF903 0.31 +1.0
237,710 + GFF903 0.38 -1.3
237,710 + GFF903 0.38 +0.5
237,711 - GFF903 0.38 +0.1
237,711 - GFF903 0.38 -0.4
237,724 - GFF903 0.40 +0.4
237,724 - GFF903 0.40 -0.3
237,724 - GFF903 0.40 +1.2
237,724 - GFF903 0.40 +0.2
237,741 - GFF903 0.41 +0.3
237,741 - GFF903 0.41 -0.6

Or see this region's nucleotide sequence