Strain Fitness in Pseudomonas sp. DMC3 around GFF844

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF843 and GFF844 are separated by 197 nucleotidesGFF844 and GFF845 overlap by 4 nucleotidesGFF845 and GFF846 are separated by 444 nucleotides GFF843 - hypothetical protein, at 190,998 to 191,852 GFF843 GFF844 - hypothetical protein, at 192,050 to 192,373 GFF844 GFF845 - hypothetical protein, at 192,370 to 192,756 GFF845 GFF846 - hypothetical protein, at 193,201 to 193,824 GFF846 Position (kb) 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 191.079 kb on + strandat 191.080 kb on - strandat 191.142 kb on + strand, within GFF843at 191.142 kb on + strand, within GFF843at 191.142 kb on + strand, within GFF843at 191.159 kb on + strand, within GFF843at 191.160 kb on - strand, within GFF843at 191.160 kb on - strand, within GFF843at 191.177 kb on + strand, within GFF843at 191.178 kb on - strand, within GFF843at 191.187 kb on + strand, within GFF843at 191.187 kb on + strand, within GFF843at 191.188 kb on - strand, within GFF843at 191.188 kb on - strand, within GFF843at 191.188 kb on - strand, within GFF843at 191.197 kb on - strand, within GFF843at 191.236 kb on - strand, within GFF843at 191.236 kb on - strand, within GFF843at 191.244 kb on + strand, within GFF843at 191.245 kb on - strand, within GFF843at 191.245 kb on - strand, within GFF843at 191.245 kb on - strand, within GFF843at 191.245 kb on - strand, within GFF843at 191.247 kb on + strand, within GFF843at 191.248 kb on - strand, within GFF843at 191.248 kb on - strand, within GFF843at 191.343 kb on + strand, within GFF843at 191.343 kb on + strand, within GFF843at 191.343 kb on + strand, within GFF843at 191.344 kb on - strand, within GFF843at 191.395 kb on + strand, within GFF843at 191.466 kb on - strand, within GFF843at 191.488 kb on - strand, within GFF843at 191.488 kb on - strand, within GFF843at 191.488 kb on - strand, within GFF843at 191.488 kb on - strand, within GFF843at 191.488 kb on - strand, within GFF843at 191.501 kb on + strand, within GFF843at 191.502 kb on - strand, within GFF843at 191.570 kb on + strand, within GFF843at 191.571 kb on - strand, within GFF843at 191.571 kb on - strand, within GFF843at 191.571 kb on - strand, within GFF843at 191.605 kb on + strand, within GFF843at 191.606 kb on - strand, within GFF843at 191.606 kb on - strand, within GFF843at 191.630 kb on - strand, within GFF843at 191.648 kb on + strand, within GFF843at 191.648 kb on + strand, within GFF843at 191.793 kb on + strandat 191.794 kb on - strandat 191.873 kb on + strandat 191.929 kb on + strandat 191.984 kb on + strandat 191.985 kb on - strandat 191.992 kb on - strandat 192.019 kb on + strandat 192.164 kb on + strand, within GFF844at 192.164 kb on + strand, within GFF844at 192.164 kb on + strand, within GFF844at 192.164 kb on + strand, within GFF844at 192.164 kb on + strand, within GFF844at 192.164 kb on + strand, within GFF844at 192.165 kb on - strand, within GFF844at 192.184 kb on + strand, within GFF844at 192.198 kb on + strand, within GFF844at 192.198 kb on + strand, within GFF844at 192.565 kb on + strand, within GFF845at 192.738 kb on + strandat 192.864 kb on + strandat 192.864 kb on + strandat 192.865 kb on - strandat 192.896 kb on + strandat 192.897 kb on - strandat 192.897 kb on - strandat 192.897 kb on - strandat 192.966 kb on + strandat 192.966 kb on + strandat 192.967 kb on - strandat 192.967 kb on - strandat 192.967 kb on - strandat 193.024 kb on + strandat 193.059 kb on - strandat 193.059 kb on - strandat 193.059 kb on - strandat 193.144 kb on - strandat 193.175 kb on + strandat 193.175 kb on + strandat 193.175 kb on + strandat 193.175 kb on + strandat 193.175 kb on + strandat 193.175 kb on + strandat 193.229 kb on + strandat 193.229 kb on + strandat 193.298 kb on + strand, within GFF846at 193.298 kb on + strand, within GFF846at 193.299 kb on - strand, within GFF846at 193.299 kb on - strand, within GFF846at 193.335 kb on + strand, within GFF846at 193.335 kb on + strand, within GFF846

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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191,079 + -0.3
191,080 - +0.1
191,142 + GFF843 0.17 +0.8
191,142 + GFF843 0.17 -0.2
191,142 + GFF843 0.17 -0.2
191,159 + GFF843 0.19 +1.8
191,160 - GFF843 0.19 -2.7
191,160 - GFF843 0.19 +0.3
191,177 + GFF843 0.21 -0.6
191,178 - GFF843 0.21 -1.1
191,187 + GFF843 0.22 -0.0
191,187 + GFF843 0.22 +0.3
191,188 - GFF843 0.22 +0.5
191,188 - GFF843 0.22 +0.1
191,188 - GFF843 0.22 +0.5
191,197 - GFF843 0.23 -1.1
191,236 - GFF843 0.28 -1.9
191,236 - GFF843 0.28 -0.1
191,244 + GFF843 0.29 +0.7
191,245 - GFF843 0.29 +1.0
191,245 - GFF843 0.29 +0.8
191,245 - GFF843 0.29 -1.2
191,245 - GFF843 0.29 +0.4
191,247 + GFF843 0.29 +0.3
191,248 - GFF843 0.29 -0.4
191,248 - GFF843 0.29 -0.7
191,343 + GFF843 0.40 +0.5
191,343 + GFF843 0.40 -0.6
191,343 + GFF843 0.40 -1.1
191,344 - GFF843 0.40 +0.0
191,395 + GFF843 0.46 -0.3
191,466 - GFF843 0.55 +0.9
191,488 - GFF843 0.57 +1.0
191,488 - GFF843 0.57 +0.2
191,488 - GFF843 0.57 -2.1
191,488 - GFF843 0.57 -0.8
191,488 - GFF843 0.57 -2.0
191,501 + GFF843 0.59 +0.4
191,502 - GFF843 0.59 -0.4
191,570 + GFF843 0.67 +0.2
191,571 - GFF843 0.67 +0.5
191,571 - GFF843 0.67 -0.8
191,571 - GFF843 0.67 +0.8
191,605 + GFF843 0.71 -0.9
191,606 - GFF843 0.71 -0.2
191,606 - GFF843 0.71 -0.3
191,630 - GFF843 0.74 +0.4
191,648 + GFF843 0.76 -0.0
191,648 + GFF843 0.76 -1.3
191,793 + +0.1
191,794 - -0.6
191,873 + -0.7
191,929 + -0.7
191,984 + +0.6
191,985 - +0.8
191,992 - -0.3
192,019 + -0.1
192,164 + GFF844 0.35 +0.5
192,164 + GFF844 0.35 +1.0
192,164 + GFF844 0.35 +0.4
192,164 + GFF844 0.35 -0.3
192,164 + GFF844 0.35 +0.0
192,164 + GFF844 0.35 +0.3
192,165 - GFF844 0.35 -0.6
192,184 + GFF844 0.41 -1.2
192,198 + GFF844 0.46 +0.7
192,198 + GFF844 0.46 +0.8
192,565 + GFF845 0.50 -0.9
192,738 + +0.8
192,864 + -1.6
192,864 + +0.3
192,865 - -0.6
192,896 + -0.5
192,897 - -0.2
192,897 - +0.0
192,897 - -0.4
192,966 + +0.3
192,966 + +0.3
192,967 - +0.4
192,967 - +0.3
192,967 - +0.1
193,024 + +0.5
193,059 - -2.1
193,059 - +0.4
193,059 - +1.2
193,144 - +0.4
193,175 + -0.5
193,175 + -0.0
193,175 + -0.3
193,175 + -0.7
193,175 + +1.3
193,175 + +0.7
193,229 + -0.7
193,229 + +0.4
193,298 + GFF846 0.16 +0.3
193,298 + GFF846 0.16 +0.1
193,299 - GFF846 0.16 -0.7
193,299 - GFF846 0.16 -1.3
193,335 + GFF846 0.21 -0.9
193,335 + GFF846 0.21 +0.9

Or see this region's nucleotide sequence