Strain Fitness in Pseudomonas sp. DMC3 around GFF74

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF72 and GFF73 overlap by 4 nucleotidesGFF73 and GFF74 overlap by 20 nucleotidesGFF74 and GFF75 overlap by 8 nucleotides GFF72 - ATP-dependent dethiobiotin synthetase BioD 1, at 83,351 to 84,031 GFF72 GFF73 - Malonyl-[acyl-carrier protein] O-methyltransferase, at 84,028 to 84,849 GFF73 GFF74 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 84,830 to 85,561 GFF74 GFF75 - 8-amino-7-oxononanoate synthase, at 85,554 to 86,732 GFF75 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 84.018 kb on + strandat 84.018 kb on + strandat 84.018 kb on + strandat 84.018 kb on + strandat 84.019 kb on - strandat 84.031 kb on + strandat 84.053 kb on + strandat 84.054 kb on - strandat 84.054 kb on - strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.065 kb on + strandat 84.066 kb on - strandat 84.066 kb on - strandat 84.104 kb on + strandat 84.104 kb on + strandat 84.105 kb on - strandat 84.201 kb on + strand, within GFF73at 84.201 kb on + strand, within GFF73at 84.201 kb on + strand, within GFF73at 84.201 kb on + strand, within GFF73at 84.202 kb on - strand, within GFF73at 84.202 kb on - strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.280 kb on + strand, within GFF73at 84.281 kb on - strand, within GFF73at 84.281 kb on - strand, within GFF73at 84.281 kb on - strand, within GFF73at 84.281 kb on - strand, within GFF73at 84.281 kb on - strand, within GFF73at 84.281 kb on - strand, within GFF73at 84.375 kb on + strand, within GFF73at 84.375 kb on + strand, within GFF73at 84.375 kb on + strand, within GFF73at 84.376 kb on - strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.379 kb on + strand, within GFF73at 84.380 kb on - strand, within GFF73at 84.380 kb on - strand, within GFF73at 84.380 kb on - strand, within GFF73at 84.380 kb on - strand, within GFF73at 84.380 kb on - strand, within GFF73at 84.384 kb on + strand, within GFF73at 84.384 kb on + strand, within GFF73at 84.385 kb on - strand, within GFF73at 84.385 kb on - strand, within GFF73at 84.851 kb on + strandat 84.851 kb on + strandat 84.851 kb on + strandat 84.852 kb on - strandat 84.852 kb on - strandat 84.852 kb on - strandat 84.852 kb on - strandat 85.163 kb on + strand, within GFF74at 85.163 kb on + strand, within GFF74at 85.163 kb on + strand, within GFF74at 85.163 kb on + strand, within GFF74at 85.163 kb on + strand, within GFF74at 85.164 kb on - strand, within GFF74at 85.164 kb on - strand, within GFF74at 85.164 kb on - strand, within GFF74at 85.164 kb on - strand, within GFF74at 85.164 kb on - strand, within GFF74at 85.164 kb on - strand, within GFF74at 85.556 kb on - strandat 85.556 kb on - strandat 85.620 kb on + strandat 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.943 kb on - strand, within GFF75at 85.943 kb on - strand, within GFF75at 85.943 kb on - strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.947 kb on - strand, within GFF75at 85.947 kb on - strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 86.028 kb on - strand, within GFF75at 86.211 kb on + strand, within GFF75at 86.290 kb on + strand, within GFF75at 86.290 kb on + strand, within GFF75at 86.413 kb on + strand, within GFF75at 86.413 kb on + strand, within GFF75at 86.413 kb on + strand, within GFF75

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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84,018 + -0.1
84,018 + +0.0
84,018 + -0.5
84,018 + +0.3
84,019 - -0.6
84,031 + +0.2
84,053 + +0.9
84,054 - +0.7
84,054 - +0.9
84,065 + -0.7
84,065 + -0.6
84,065 + -1.3
84,065 + -0.9
84,065 + +0.1
84,065 + -1.4
84,065 + +0.5
84,065 + +0.4
84,066 - +0.5
84,066 - -0.2
84,104 + -0.5
84,104 + -0.2
84,105 - -0.6
84,201 + GFF73 0.21 +1.3
84,201 + GFF73 0.21 -0.9
84,201 + GFF73 0.21 +0.8
84,201 + GFF73 0.21 -0.0
84,202 - GFF73 0.21 +0.8
84,202 - GFF73 0.21 -0.8
84,280 + GFF73 0.31 -0.6
84,280 + GFF73 0.31 +1.5
84,280 + GFF73 0.31 +0.2
84,280 + GFF73 0.31 -0.9
84,280 + GFF73 0.31 -0.4
84,280 + GFF73 0.31 +1.9
84,280 + GFF73 0.31 -0.9
84,280 + GFF73 0.31 +0.1
84,280 + GFF73 0.31 -0.3
84,280 + GFF73 0.31 +0.6
84,281 - GFF73 0.31 -0.8
84,281 - GFF73 0.31 -1.0
84,281 - GFF73 0.31 -1.2
84,281 - GFF73 0.31 +0.5
84,281 - GFF73 0.31 +0.3
84,281 - GFF73 0.31 +0.1
84,375 + GFF73 0.42 +0.4
84,375 + GFF73 0.42 -0.8
84,375 + GFF73 0.42 -0.2
84,376 - GFF73 0.42 -0.8
84,379 + GFF73 0.43 -0.2
84,379 + GFF73 0.43 -0.7
84,379 + GFF73 0.43 -1.0
84,379 + GFF73 0.43 -0.3
84,379 + GFF73 0.43 -0.8
84,379 + GFF73 0.43 -0.8
84,379 + GFF73 0.43 +0.0
84,379 + GFF73 0.43 -0.4
84,379 + GFF73 0.43 -1.5
84,380 - GFF73 0.43 -0.4
84,380 - GFF73 0.43 -0.2
84,380 - GFF73 0.43 +0.1
84,380 - GFF73 0.43 +0.5
84,380 - GFF73 0.43 -0.1
84,384 + GFF73 0.43 -1.9
84,384 + GFF73 0.43 +0.4
84,385 - GFF73 0.43 +0.2
84,385 - GFF73 0.43 -0.7
84,851 + +1.8
84,851 + +0.5
84,851 + -0.1
84,852 - +0.2
84,852 - -0.2
84,852 - -0.3
84,852 - +0.4
85,163 + GFF74 0.45 +0.2
85,163 + GFF74 0.45 -0.3
85,163 + GFF74 0.45 -0.1
85,163 + GFF74 0.45 -1.2
85,163 + GFF74 0.45 +0.5
85,164 - GFF74 0.46 -0.9
85,164 - GFF74 0.46 +0.4
85,164 - GFF74 0.46 +0.1
85,164 - GFF74 0.46 +0.1
85,164 - GFF74 0.46 +0.0
85,164 - GFF74 0.46 -0.2
85,556 - -0.5
85,556 - +0.7
85,620 + -0.7
85,942 + GFF75 0.33 +0.2
85,942 + GFF75 0.33 +0.2
85,942 + GFF75 0.33 -0.2
85,942 + GFF75 0.33 +1.2
85,942 + GFF75 0.33 -0.5
85,942 + GFF75 0.33 +0.2
85,942 + GFF75 0.33 -0.3
85,942 + GFF75 0.33 +0.6
85,942 + GFF75 0.33 -1.1
85,942 + GFF75 0.33 -0.6
85,942 + GFF75 0.33 -0.1
85,943 - GFF75 0.33 -0.6
85,943 - GFF75 0.33 +0.6
85,943 - GFF75 0.33 -1.1
85,946 + GFF75 0.33 +0.6
85,946 + GFF75 0.33 +0.3
85,946 + GFF75 0.33 -0.8
85,946 + GFF75 0.33 +0.7
85,946 + GFF75 0.33 -0.2
85,946 + GFF75 0.33 -0.2
85,947 - GFF75 0.33 -0.5
85,947 - GFF75 0.33 +0.3
85,948 + GFF75 0.33 +0.2
85,948 + GFF75 0.33 -1.1
85,948 + GFF75 0.33 -0.0
85,948 + GFF75 0.33 +0.2
85,948 + GFF75 0.33 -1.5
85,949 - GFF75 0.34 -0.7
85,949 - GFF75 0.34 -0.1
85,949 - GFF75 0.34 -1.3
85,949 - GFF75 0.34 +0.4
85,949 - GFF75 0.34 +0.5
85,949 - GFF75 0.34 +0.6
85,949 - GFF75 0.34 -0.8
85,949 - GFF75 0.34 +0.7
86,028 - GFF75 0.40 +0.4
86,211 + GFF75 0.56 -0.6
86,290 + GFF75 0.62 -0.9
86,290 + GFF75 0.62 -0.2
86,413 + GFF75 0.73 -0.1
86,413 + GFF75 0.73 +0.2
86,413 + GFF75 0.73 +2.0

Or see this region's nucleotide sequence