Strain Fitness in Pseudomonas sp. DMC3 around GFF733

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF732 and GFF733 are separated by 102 nucleotidesGFF733 and GFF734 are separated by 209 nucleotidesGFF734 and GFF735 are separated by 89 nucleotides GFF732 - Aerotaxis receptor, at 49,200 to 50,765 GFF732 GFF733 - hypothetical protein, at 50,868 to 51,659 GFF733 GFF734 - Isonitrile hydratase, at 51,869 to 52,555 GFF734 GFF735 - HTH-type transcriptional regulator CdhR, at 52,645 to 53,628 GFF735 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1at 49.869 kb on + strand, within GFF732at 49.870 kb on - strand, within GFF732at 49.870 kb on - strand, within GFF732at 49.870 kb on - strand, within GFF732at 49.870 kb on - strand, within GFF732at 50.113 kb on + strand, within GFF732at 50.113 kb on + strand, within GFF732at 50.113 kb on + strand, within GFF732at 50.113 kb on + strand, within GFF732at 50.113 kb on + strand, within GFF732at 50.114 kb on - strand, within GFF732at 50.377 kb on + strand, within GFF732at 50.377 kb on + strand, within GFF732at 50.377 kb on + strand, within GFF732at 50.469 kb on + strand, within GFF732at 50.469 kb on + strand, within GFF732at 50.469 kb on + strand, within GFF732at 50.469 kb on + strand, within GFF732at 50.469 kb on + strand, within GFF732at 50.469 kb on + strand, within GFF732at 50.470 kb on - strand, within GFF732at 50.470 kb on - strand, within GFF732at 50.470 kb on - strand, within GFF732at 50.470 kb on - strand, within GFF732at 50.470 kb on - strand, within GFF732at 50.470 kb on - strand, within GFF732at 50.473 kb on + strand, within GFF732at 50.671 kb on + strandat 50.671 kb on + strandat 50.672 kb on - strandat 50.745 kb on - strandat 50.745 kb on - strandat 50.745 kb on - strandat 50.759 kb on + strandat 50.759 kb on + strandat 50.760 kb on - strandat 50.760 kb on - strandat 50.817 kb on - strandat 50.838 kb on + strandat 50.838 kb on + strandat 50.839 kb on - strandat 50.843 kb on - strandat 51.117 kb on + strand, within GFF733at 51.117 kb on + strand, within GFF733at 51.117 kb on + strand, within GFF733at 51.117 kb on + strand, within GFF733at 51.117 kb on + strand, within GFF733at 51.117 kb on + strand, within GFF733at 51.118 kb on - strand, within GFF733at 51.118 kb on - strand, within GFF733at 51.118 kb on - strand, within GFF733at 51.118 kb on - strand, within GFF733at 51.121 kb on + strand, within GFF733at 51.220 kb on - strand, within GFF733at 51.287 kb on - strand, within GFF733at 51.287 kb on - strand, within GFF733at 51.287 kb on - strand, within GFF733at 51.376 kb on + strand, within GFF733at 51.376 kb on + strand, within GFF733at 51.376 kb on + strand, within GFF733at 51.377 kb on - strand, within GFF733at 51.377 kb on - strand, within GFF733at 51.904 kb on + strandat 51.905 kb on - strandat 52.015 kb on - strand, within GFF734at 52.186 kb on - strand, within GFF734at 52.186 kb on - strand, within GFF734at 52.269 kb on + strand, within GFF734at 52.394 kb on - strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.458 kb on - strand, within GFF734at 52.458 kb on - strand, within GFF734at 52.484 kb on + strand, within GFF734at 52.484 kb on + strand, within GFF734at 52.491 kb on + strandat 52.491 kb on + strandat 52.492 kb on - strandat 52.594 kb on + strandat 52.594 kb on + strandat 52.595 kb on - strandat 52.595 kb on - strandat 52.603 kb on - strandat 52.603 kb on - strandat 52.603 kb on - strandat 52.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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49,869 + GFF732 0.43 -1.0
49,870 - GFF732 0.43 -0.3
49,870 - GFF732 0.43 +0.4
49,870 - GFF732 0.43 -0.1
49,870 - GFF732 0.43 -0.2
50,113 + GFF732 0.58 -0.4
50,113 + GFF732 0.58 -0.4
50,113 + GFF732 0.58 -0.1
50,113 + GFF732 0.58 -0.5
50,113 + GFF732 0.58 +0.7
50,114 - GFF732 0.58 -1.2
50,377 + GFF732 0.75 +0.8
50,377 + GFF732 0.75 -1.2
50,377 + GFF732 0.75 -0.1
50,469 + GFF732 0.81 +0.6
50,469 + GFF732 0.81 -1.8
50,469 + GFF732 0.81 +0.3
50,469 + GFF732 0.81 -0.8
50,469 + GFF732 0.81 +0.0
50,469 + GFF732 0.81 -0.5
50,470 - GFF732 0.81 +1.7
50,470 - GFF732 0.81 -0.5
50,470 - GFF732 0.81 -0.3
50,470 - GFF732 0.81 +1.1
50,470 - GFF732 0.81 -1.1
50,470 - GFF732 0.81 +0.5
50,473 + GFF732 0.81 +0.9
50,671 + -0.5
50,671 + -0.1
50,672 - -1.0
50,745 - -0.4
50,745 - +0.1
50,745 - -1.0
50,759 + -0.8
50,759 + -0.7
50,760 - -0.4
50,760 - -0.4
50,817 - +0.5
50,838 + -0.7
50,838 + +0.9
50,839 - -0.8
50,843 - +0.4
51,117 + GFF733 0.31 +0.2
51,117 + GFF733 0.31 -0.7
51,117 + GFF733 0.31 +0.9
51,117 + GFF733 0.31 -0.1
51,117 + GFF733 0.31 +0.3
51,117 + GFF733 0.31 +0.8
51,118 - GFF733 0.32 -0.5
51,118 - GFF733 0.32 -0.1
51,118 - GFF733 0.32 +0.8
51,118 - GFF733 0.32 +0.8
51,121 + GFF733 0.32 -0.7
51,220 - GFF733 0.44 -0.7
51,287 - GFF733 0.53 -0.3
51,287 - GFF733 0.53 -0.7
51,287 - GFF733 0.53 -0.9
51,376 + GFF733 0.64 -0.7
51,376 + GFF733 0.64 +0.3
51,376 + GFF733 0.64 -0.5
51,377 - GFF733 0.64 +0.7
51,377 - GFF733 0.64 +1.3
51,904 + -1.1
51,905 - -0.3
52,015 - GFF734 0.21 -0.7
52,186 - GFF734 0.46 -0.8
52,186 - GFF734 0.46 -0.2
52,269 + GFF734 0.58 +1.6
52,394 - GFF734 0.76 +0.9
52,457 + GFF734 0.86 -1.1
52,457 + GFF734 0.86 -0.3
52,457 + GFF734 0.86 -0.1
52,458 - GFF734 0.86 -0.6
52,458 - GFF734 0.86 -0.4
52,484 + GFF734 0.90 +0.6
52,484 + GFF734 0.90 -1.1
52,491 + +1.1
52,491 + -0.2
52,492 - +0.4
52,594 + -0.4
52,594 + -0.3
52,595 - -0.5
52,595 - -0.5
52,603 - +0.3
52,603 - -1.0
52,603 - -1.6
52,650 + +0.2

Or see this region's nucleotide sequence