Strain Fitness in Pseudomonas sp. DMC3 around GFF729

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF726 and GFF727 overlap by 4 nucleotidesGFF727 and GFF728 are separated by 3 nucleotidesGFF728 and GFF729 are separated by 10 nucleotidesGFF729 and GFF730 are separated by 90 nucleotides GFF726 - Cbb3-type cytochrome c oxidase subunit CcoP1, at 42,963 to 43,916 GFF726 GFF727 - hypothetical protein, at 43,913 to 44,110 GFF727 GFF728 - hypothetical protein, at 44,114 to 44,722 GFF728 GFF729 - Cbb3-type cytochrome c oxidase subunit CcoN1, at 44,733 to 46,157 GFF729 GFF730 - hypothetical protein, at 46,248 to 46,928 GFF730 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 43.768 kb on + strand, within GFF726at 43.768 kb on + strand, within GFF726at 43.769 kb on - strand, within GFF726at 43.899 kb on - strandat 43.899 kb on - strandat 43.924 kb on + strandat 44.154 kb on + strandat 44.154 kb on + strandat 44.155 kb on - strandat 44.155 kb on - strandat 44.227 kb on - strand, within GFF728at 44.349 kb on + strand, within GFF728at 44.349 kb on + strand, within GFF728at 44.349 kb on + strand, within GFF728at 44.349 kb on + strand, within GFF728at 44.350 kb on - strand, within GFF728at 44.350 kb on - strand, within GFF728at 44.379 kb on + strand, within GFF728at 44.413 kb on + strand, within GFF728at 44.547 kb on + strand, within GFF728at 44.547 kb on + strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.548 kb on - strand, within GFF728at 44.580 kb on + strand, within GFF728at 44.800 kb on + strandat 44.800 kb on + strandat 44.800 kb on + strandat 44.800 kb on + strandat 44.800 kb on + strandat 44.800 kb on + strandat 44.800 kb on + strandat 44.801 kb on - strandat 44.801 kb on - strandat 44.801 kb on - strandat 44.896 kb on + strand, within GFF729at 44.896 kb on + strand, within GFF729at 44.897 kb on - strand, within GFF729at 44.897 kb on - strand, within GFF729at 44.974 kb on + strand, within GFF729at 44.974 kb on + strand, within GFF729at 44.974 kb on + strand, within GFF729at 44.974 kb on + strand, within GFF729at 45.071 kb on - strand, within GFF729at 45.145 kb on + strand, within GFF729at 45.146 kb on - strand, within GFF729at 45.208 kb on + strand, within GFF729at 45.260 kb on + strand, within GFF729at 45.260 kb on + strand, within GFF729at 45.261 kb on - strand, within GFF729at 45.261 kb on - strand, within GFF729at 45.377 kb on - strand, within GFF729at 45.406 kb on + strand, within GFF729at 45.406 kb on + strand, within GFF729at 45.455 kb on - strand, within GFF729at 45.487 kb on + strand, within GFF729at 45.487 kb on + strand, within GFF729at 45.487 kb on + strand, within GFF729at 45.487 kb on + strand, within GFF729at 45.487 kb on + strand, within GFF729at 45.488 kb on - strand, within GFF729at 45.490 kb on + strand, within GFF729at 45.490 kb on + strand, within GFF729at 45.490 kb on + strand, within GFF729at 45.490 kb on + strand, within GFF729at 45.490 kb on + strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.491 kb on - strand, within GFF729at 45.580 kb on + strand, within GFF729at 45.581 kb on - strand, within GFF729at 45.685 kb on + strand, within GFF729at 45.685 kb on + strand, within GFF729at 45.686 kb on - strand, within GFF729at 45.791 kb on - strand, within GFF729at 45.922 kb on + strand, within GFF729at 46.100 kb on + strandat 46.101 kb on - strandat 46.101 kb on - strandat 46.126 kb on + strandat 46.126 kb on + strandat 46.126 kb on + strandat 46.126 kb on + strandat 46.126 kb on + strandat 46.127 kb on - strandat 46.127 kb on - strandat 46.127 kb on - strandat 46.132 kb on + strandat 46.133 kb on - strandat 46.140 kb on - strandat 46.145 kb on + strandat 46.145 kb on + strandat 46.145 kb on + strandat 46.146 kb on - strandat 46.146 kb on - strandat 46.221 kb on + strandat 46.221 kb on + strandat 46.222 kb on - strandat 46.223 kb on + strandat 46.223 kb on + strandat 46.224 kb on - strandat 46.232 kb on + strandat 46.233 kb on - strandat 46.272 kb on - strandat 46.356 kb on - strand, within GFF730at 46.356 kb on - strand, within GFF730at 46.356 kb on - strand, within GFF730at 46.461 kb on + strand, within GFF730at 46.461 kb on + strand, within GFF730at 46.461 kb on + strand, within GFF730at 46.461 kb on + strand, within GFF730at 46.461 kb on + strand, within GFF730at 46.461 kb on + strand, within GFF730at 46.462 kb on - strand, within GFF730at 46.462 kb on - strand, within GFF730at 46.462 kb on - strand, within GFF730at 46.462 kb on - strand, within GFF730at 46.462 kb on - strand, within GFF730at 46.462 kb on - strand, within GFF730at 46.463 kb on + strand, within GFF730at 46.463 kb on + strand, within GFF730at 46.671 kb on + strand, within GFF730at 46.671 kb on + strand, within GFF730at 46.789 kb on - strand, within GFF730at 46.868 kb on + strandat 46.868 kb on + strandat 46.868 kb on + strandat 47.005 kb on + strandat 47.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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43,768 + GFF726 0.84 -1.0
43,768 + GFF726 0.84 +0.1
43,769 - GFF726 0.84 +0.9
43,899 - -0.7
43,899 - +0.7
43,924 + +0.5
44,154 + +2.1
44,154 + +0.5
44,155 - +0.0
44,155 - -0.2
44,227 - GFF728 0.19 +0.8
44,349 + GFF728 0.39 +1.3
44,349 + GFF728 0.39 -0.3
44,349 + GFF728 0.39 +1.0
44,349 + GFF728 0.39 +0.3
44,350 - GFF728 0.39 +0.6
44,350 - GFF728 0.39 -1.2
44,379 + GFF728 0.44 +1.3
44,413 + GFF728 0.49 -0.9
44,547 + GFF728 0.71 +0.0
44,547 + GFF728 0.71 +0.5
44,548 - GFF728 0.71 +1.7
44,548 - GFF728 0.71 +1.8
44,548 - GFF728 0.71 +0.3
44,548 - GFF728 0.71 +0.5
44,548 - GFF728 0.71 +1.1
44,548 - GFF728 0.71 -2.2
44,548 - GFF728 0.71 +0.3
44,580 + GFF728 0.77 -0.7
44,800 + -1.1
44,800 + -0.2
44,800 + -0.2
44,800 + -0.2
44,800 + +0.8
44,800 + -0.2
44,800 + +0.3
44,801 - +1.3
44,801 - -1.7
44,801 - -0.7
44,896 + GFF729 0.11 +0.1
44,896 + GFF729 0.11 +0.4
44,897 - GFF729 0.12 -0.2
44,897 - GFF729 0.12 -0.7
44,974 + GFF729 0.17 -0.3
44,974 + GFF729 0.17 -0.7
44,974 + GFF729 0.17 -0.2
44,974 + GFF729 0.17 +1.0
45,071 - GFF729 0.24 +0.5
45,145 + GFF729 0.29 +0.8
45,146 - GFF729 0.29 +0.9
45,208 + GFF729 0.33 +0.7
45,260 + GFF729 0.37 -1.1
45,260 + GFF729 0.37 -1.2
45,261 - GFF729 0.37 +1.5
45,261 - GFF729 0.37 +1.7
45,377 - GFF729 0.45 +1.8
45,406 + GFF729 0.47 +1.1
45,406 + GFF729 0.47 +1.6
45,455 - GFF729 0.51 +0.5
45,487 + GFF729 0.53 +0.1
45,487 + GFF729 0.53 +2.5
45,487 + GFF729 0.53 +0.3
45,487 + GFF729 0.53 -0.1
45,487 + GFF729 0.53 +0.5
45,488 - GFF729 0.53 +1.1
45,490 + GFF729 0.53 +1.3
45,490 + GFF729 0.53 +0.5
45,490 + GFF729 0.53 +0.5
45,490 + GFF729 0.53 -0.4
45,490 + GFF729 0.53 +1.0
45,491 - GFF729 0.53 -0.7
45,491 - GFF729 0.53 +0.6
45,491 - GFF729 0.53 +0.5
45,491 - GFF729 0.53 +1.5
45,491 - GFF729 0.53 -0.5
45,491 - GFF729 0.53 +1.5
45,491 - GFF729 0.53 +0.9
45,491 - GFF729 0.53 +1.1
45,491 - GFF729 0.53 -0.2
45,491 - GFF729 0.53 +0.8
45,580 + GFF729 0.59 -0.5
45,581 - GFF729 0.60 +0.7
45,685 + GFF729 0.67 +0.3
45,685 + GFF729 0.67 +0.9
45,686 - GFF729 0.67 +0.8
45,791 - GFF729 0.74 +0.0
45,922 + GFF729 0.83 +0.7
46,100 + +0.1
46,101 - -0.9
46,101 - +1.4
46,126 + +1.6
46,126 + +1.8
46,126 + +0.9
46,126 + +0.8
46,126 + +0.4
46,127 - +0.3
46,127 - -0.1
46,127 - -0.9
46,132 + +0.8
46,133 - +1.1
46,140 - -0.7
46,145 + +0.6
46,145 + +0.2
46,145 + +1.0
46,146 - +1.3
46,146 - +1.0
46,221 + +0.6
46,221 + +1.1
46,222 - -1.1
46,223 + -1.1
46,223 + +1.5
46,224 - +0.0
46,232 + +0.5
46,233 - +1.3
46,272 - +0.7
46,356 - GFF730 0.16 +0.8
46,356 - GFF730 0.16 -1.3
46,356 - GFF730 0.16 +0.8
46,461 + GFF730 0.31 -0.0
46,461 + GFF730 0.31 +0.0
46,461 + GFF730 0.31 -0.7
46,461 + GFF730 0.31 -1.0
46,461 + GFF730 0.31 -0.5
46,461 + GFF730 0.31 -0.1
46,462 - GFF730 0.31 +1.0
46,462 - GFF730 0.31 +0.2
46,462 - GFF730 0.31 -1.1
46,462 - GFF730 0.31 -1.0
46,462 - GFF730 0.31 -0.7
46,462 - GFF730 0.31 +0.8
46,463 + GFF730 0.32 -0.1
46,463 + GFF730 0.32 +0.1
46,671 + GFF730 0.62 -0.7
46,671 + GFF730 0.62 -0.1
46,789 - GFF730 0.79 -0.2
46,868 + -0.0
46,868 + -0.1
46,868 + +0.1
47,005 + +0.3
47,033 - -0.1

Or see this region's nucleotide sequence