Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF725 and GFF726 are separated by 481 nucleotides GFF726 and GFF727 overlap by 4 nucleotides GFF727 and GFF728 are separated by 3 nucleotides GFF728 and GFF729 are separated by 10 nucleotides
GFF725 - Cbb3-type cytochrome c oxidase subunit CcoN1, at 41,039 to 42,481
GFF725
GFF726 - Cbb3-type cytochrome c oxidase subunit CcoP1, at 42,963 to 43,916
GFF726
GFF727 - hypothetical protein, at 43,913 to 44,110
GFF727
GFF728 - hypothetical protein, at 44,114 to 44,722
GFF728
GFF729 - Cbb3-type cytochrome c oxidase subunit CcoN1, at 44,733 to 46,157
GFF729
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.006 kb on + strand, within GFF725 at 42.006 kb on + strand, within GFF725 at 42.006 kb on + strand, within GFF725 at 42.006 kb on + strand, within GFF725 at 42.006 kb on + strand, within GFF725 at 42.006 kb on + strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.007 kb on - strand, within GFF725 at 42.058 kb on - strand, within GFF725 at 42.058 kb on - strand, within GFF725 at 42.111 kb on + strand, within GFF725 at 42.111 kb on + strand, within GFF725 at 42.111 kb on + strand, within GFF725 at 42.112 kb on - strand, within GFF725 at 42.112 kb on - strand, within GFF725 at 42.121 kb on + strand, within GFF725 at 42.121 kb on + strand, within GFF725 at 42.122 kb on - strand, within GFF725 at 42.122 kb on - strand, within GFF725 at 42.146 kb on - strand, within GFF725 at 42.146 kb on - strand, within GFF725 at 42.243 kb on + strand, within GFF725 at 42.244 kb on - strand, within GFF725 at 42.244 kb on - strand, within GFF725 at 42.244 kb on - strand, within GFF725 at 42.246 kb on + strand, within GFF725 at 42.246 kb on + strand, within GFF725 at 42.246 kb on + strand, within GFF725 at 42.246 kb on + strand, within GFF725 at 42.247 kb on - strand, within GFF725 at 42.247 kb on - strand, within GFF725 at 42.247 kb on - strand, within GFF725 at 42.440 kb on + strand at 42.440 kb on + strand at 42.440 kb on + strand at 42.440 kb on + strand at 42.445 kb on + strand at 42.445 kb on + strand at 42.445 kb on + strand at 42.446 kb on - strand at 42.447 kb on + strand at 42.447 kb on + strand at 42.447 kb on + strand at 42.447 kb on + strand at 42.448 kb on - strand at 42.448 kb on - strand at 42.448 kb on - strand at 42.448 kb on - strand at 42.451 kb on + strand at 42.451 kb on + strand at 42.452 kb on - strand at 42.452 kb on - strand at 42.452 kb on - strand at 42.452 kb on - strand at 42.452 kb on - strand at 42.453 kb on + strand at 42.453 kb on + strand at 42.453 kb on + strand at 42.453 kb on + strand at 42.454 kb on - strand at 42.454 kb on - strand at 42.454 kb on - strand at 42.484 kb on + strand at 42.484 kb on + strand at 42.485 kb on - strand at 42.485 kb on - strand at 42.510 kb on - strand at 42.511 kb on + strand at 42.512 kb on - strand at 42.533 kb on + strand at 42.533 kb on + strand at 42.533 kb on + strand at 42.533 kb on + strand at 42.533 kb on + strand at 42.534 kb on - strand at 42.534 kb on - strand at 42.534 kb on - strand at 42.534 kb on - strand at 42.534 kb on - strand at 42.537 kb on + strand at 42.537 kb on + strand at 42.537 kb on + strand at 42.537 kb on + strand at 42.537 kb on + strand at 42.537 kb on + strand at 42.538 kb on - strand at 42.538 kb on - strand at 42.538 kb on - strand at 42.538 kb on - strand at 42.539 kb on + strand at 42.539 kb on + strand at 42.539 kb on + strand at 42.540 kb on - strand at 42.540 kb on - strand at 42.540 kb on - strand at 42.622 kb on - strand at 42.750 kb on - strand at 42.753 kb on + strand at 42.754 kb on - strand at 42.850 kb on + strand at 42.851 kb on - strand at 42.851 kb on - strand at 42.851 kb on - strand at 42.965 kb on - strand at 43.049 kb on + strand at 43.050 kb on - strand at 43.082 kb on + strand, within GFF726 at 43.082 kb on + strand, within GFF726 at 43.082 kb on + strand, within GFF726 at 43.082 kb on + strand, within GFF726 at 43.082 kb on + strand, within GFF726 at 43.082 kb on + strand, within GFF726 at 43.083 kb on - strand, within GFF726 at 43.138 kb on + strand, within GFF726 at 43.138 kb on + strand, within GFF726 at 43.138 kb on + strand, within GFF726 at 43.139 kb on - strand, within GFF726 at 43.139 kb on - strand, within GFF726 at 43.226 kb on + strand, within GFF726 at 43.227 kb on - strand, within GFF726 at 43.307 kb on - strand, within GFF726 at 43.691 kb on - strand, within GFF726 at 43.702 kb on + strand, within GFF726 at 43.703 kb on - strand, within GFF726 at 43.768 kb on + strand, within GFF726 at 43.768 kb on + strand, within GFF726 at 43.769 kb on - strand, within GFF726 at 43.899 kb on - strand at 43.899 kb on - strand at 43.924 kb on + strand at 44.154 kb on + strand at 44.154 kb on + strand at 44.155 kb on - strand at 44.155 kb on - strand at 44.227 kb on - strand, within GFF728 at 44.349 kb on + strand, within GFF728 at 44.349 kb on + strand, within GFF728 at 44.349 kb on + strand, within GFF728 at 44.349 kb on + strand, within GFF728 at 44.350 kb on - strand, within GFF728 at 44.350 kb on - strand, within GFF728 at 44.379 kb on + strand, within GFF728 at 44.413 kb on + strand, within GFF728 at 44.547 kb on + strand, within GFF728 at 44.547 kb on + strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.548 kb on - strand, within GFF728 at 44.580 kb on + strand, within GFF728 at 44.800 kb on + strand at 44.800 kb on + strand at 44.800 kb on + strand at 44.800 kb on + strand at 44.800 kb on + strand at 44.800 kb on + strand at 44.800 kb on + strand at 44.801 kb on - strand at 44.801 kb on - strand at 44.801 kb on - strand at 44.896 kb on + strand, within GFF729 at 44.896 kb on + strand, within GFF729 at 44.897 kb on - strand, within GFF729 at 44.897 kb on - strand, within GFF729
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 42,006 + GFF725 0.67 +0.3 42,006 + GFF725 0.67 +1.5 42,006 + GFF725 0.67 -0.9 42,006 + GFF725 0.67 +0.2 42,006 + GFF725 0.67 -0.9 42,006 + GFF725 0.67 +0.0 42,007 - GFF725 0.67 +0.7 42,007 - GFF725 0.67 +0.2 42,007 - GFF725 0.67 -0.5 42,007 - GFF725 0.67 -0.6 42,007 - GFF725 0.67 -0.9 42,007 - GFF725 0.67 +0.4 42,007 - GFF725 0.67 -0.9 42,007 - GFF725 0.67 -0.9 42,007 - GFF725 0.67 +1.6 42,007 - GFF725 0.67 +0.2 42,007 - GFF725 0.67 -0.3 42,007 - GFF725 0.67 -0.1 42,007 - GFF725 0.67 -0.2 42,007 - GFF725 0.67 -0.7 42,058 - GFF725 0.71 -0.9 42,058 - GFF725 0.71 +0.1 42,111 + GFF725 0.74 +1.0 42,111 + GFF725 0.74 -0.3 42,111 + GFF725 0.74 -1.0 42,112 - GFF725 0.74 -1.1 42,112 - GFF725 0.74 +0.6 42,121 + GFF725 0.75 -0.5 42,121 + GFF725 0.75 -0.6 42,122 - GFF725 0.75 +1.0 42,122 - GFF725 0.75 +0.8 42,146 - GFF725 0.77 -1.5 42,146 - GFF725 0.77 +0.6 42,243 + GFF725 0.83 +0.8 42,244 - GFF725 0.84 +0.3 42,244 - GFF725 0.84 +0.3 42,244 - GFF725 0.84 -1.1 42,246 + GFF725 0.84 +0.2 42,246 + GFF725 0.84 -0.2 42,246 + GFF725 0.84 -0.8 42,246 + GFF725 0.84 -0.5 42,247 - GFF725 0.84 +0.9 42,247 - GFF725 0.84 -0.1 42,247 - GFF725 0.84 -0.3 42,440 + -0.2 42,440 + +0.1 42,440 + -0.1 42,440 + -0.1 42,445 + +0.1 42,445 + -0.4 42,445 + +0.3 42,446 - +0.2 42,447 + +0.7 42,447 + +1.1 42,447 + -0.9 42,447 + -1.3 42,448 - -1.1 42,448 - -1.9 42,448 - -0.4 42,448 - +1.6 42,451 + +0.0 42,451 + +0.3 42,452 - -0.8 42,452 - +0.3 42,452 - -0.7 42,452 - -0.2 42,452 - +0.3 42,453 + +0.0 42,453 + -0.5 42,453 + -0.2 42,453 + +0.0 42,454 - +0.9 42,454 - -0.4 42,454 - -1.4 42,484 + +0.0 42,484 + -0.1 42,485 - -0.3 42,485 - -0.7 42,510 - +0.1 42,511 + -0.7 42,512 - +0.5 42,533 + +0.0 42,533 + +0.4 42,533 + -0.4 42,533 + -0.3 42,533 + +0.5 42,534 - -0.4 42,534 - -0.8 42,534 - +1.1 42,534 - +0.8 42,534 - +0.4 42,537 + -0.8 42,537 + +0.8 42,537 + -0.3 42,537 + -0.1 42,537 + -0.4 42,537 + -0.4 42,538 - -1.1 42,538 - -0.6 42,538 - -0.3 42,538 - -0.7 42,539 + -0.7 42,539 + -0.9 42,539 + -1.6 42,540 - -0.7 42,540 - -0.7 42,540 - -0.2 42,622 - +1.5 42,750 - -1.1 42,753 + -1.2 42,754 - -0.7 42,850 + -1.2 42,851 - +0.6 42,851 - +0.6 42,851 - -0.2 42,965 - +0.3 43,049 + +0.3 43,050 - +0.3 43,082 + GFF726 0.12 +1.8 43,082 + GFF726 0.12 +0.5 43,082 + GFF726 0.12 +0.5 43,082 + GFF726 0.12 -1.1 43,082 + GFF726 0.12 -0.1 43,082 + GFF726 0.12 +1.3 43,083 - GFF726 0.13 +0.3 43,138 + GFF726 0.18 -0.8 43,138 + GFF726 0.18 +0.8 43,138 + GFF726 0.18 -0.2 43,139 - GFF726 0.18 +1.6 43,139 - GFF726 0.18 +1.5 43,226 + GFF726 0.28 +0.7 43,227 - GFF726 0.28 +1.3 43,307 - GFF726 0.36 +1.9 43,691 - GFF726 0.76 -0.5 43,702 + GFF726 0.77 -0.2 43,703 - GFF726 0.78 -0.5 43,768 + GFF726 0.84 -1.0 43,768 + GFF726 0.84 +0.1 43,769 - GFF726 0.84 +0.9 43,899 - -0.7 43,899 - +0.7 43,924 + +0.5 44,154 + +2.1 44,154 + +0.5 44,155 - +0.0 44,155 - -0.2 44,227 - GFF728 0.19 +0.8 44,349 + GFF728 0.39 +1.3 44,349 + GFF728 0.39 -0.3 44,349 + GFF728 0.39 +1.0 44,349 + GFF728 0.39 +0.3 44,350 - GFF728 0.39 +0.6 44,350 - GFF728 0.39 -1.2 44,379 + GFF728 0.44 +1.3 44,413 + GFF728 0.49 -0.9 44,547 + GFF728 0.71 +0.0 44,547 + GFF728 0.71 +0.5 44,548 - GFF728 0.71 +1.7 44,548 - GFF728 0.71 +1.8 44,548 - GFF728 0.71 +0.3 44,548 - GFF728 0.71 +0.5 44,548 - GFF728 0.71 +1.1 44,548 - GFF728 0.71 -2.2 44,548 - GFF728 0.71 +0.3 44,580 + GFF728 0.77 -0.7 44,800 + -1.1 44,800 + -0.2 44,800 + -0.2 44,800 + -0.2 44,800 + +0.8 44,800 + -0.2 44,800 + +0.3 44,801 - +1.3 44,801 - -1.7 44,801 - -0.7 44,896 + GFF729 0.11 +0.1 44,896 + GFF729 0.11 +0.4 44,897 - GFF729 0.12 -0.2 44,897 - GFF729 0.12 -0.7
Or see this region's nucleotide sequence