Strain Fitness in Pseudomonas sp. DMC3 around GFF723

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF721 and GFF722 overlap by 37 nucleotidesGFF722 and GFF723 overlap by 4 nucleotidesGFF723 and GFF724 are separated by 17 nucleotidesGFF724 and GFF725 overlap by 1 nucleotides GFF721 - hypothetical protein, at 39,120 to 39,296 GFF721 GFF722 - Cbb3-type cytochrome c oxidase subunit CcoP2, at 39,260 to 40,243 GFF722 GFF723 - hypothetical protein, at 40,240 to 40,413 GFF723 GFF724 - hypothetical protein, at 40,431 to 41,039 GFF724 GFF725 - Cbb3-type cytochrome c oxidase subunit CcoN1, at 41,039 to 42,481 GFF725 Position (kb) 40 41Strain fitness (log2 ratio) -1 0 1 2at 39.306 kb on + strandat 39.306 kb on + strandat 39.307 kb on - strandat 39.307 kb on - strandat 39.313 kb on - strandat 39.423 kb on + strand, within GFF722at 39.423 kb on + strand, within GFF722at 39.423 kb on + strand, within GFF722at 39.424 kb on - strand, within GFF722at 39.424 kb on - strand, within GFF722at 39.599 kb on + strand, within GFF722at 39.599 kb on + strand, within GFF722at 39.972 kb on + strand, within GFF722at 39.972 kb on + strand, within GFF722at 39.972 kb on + strand, within GFF722at 39.972 kb on + strand, within GFF722at 39.973 kb on - strand, within GFF722at 39.973 kb on - strand, within GFF722at 39.973 kb on - strand, within GFF722at 39.978 kb on + strand, within GFF722at 39.979 kb on - strand, within GFF722at 39.979 kb on - strand, within GFF722at 40.030 kb on - strand, within GFF722at 40.030 kb on - strand, within GFF722at 40.095 kb on + strand, within GFF722at 40.095 kb on + strand, within GFF722at 40.096 kb on - strand, within GFF722at 40.096 kb on - strand, within GFF722at 40.096 kb on - strand, within GFF722at 40.198 kb on + strandat 40.221 kb on + strandat 40.221 kb on + strandat 40.221 kb on + strandat 40.222 kb on - strandat 40.222 kb on - strandat 40.237 kb on + strandat 40.237 kb on + strandat 40.237 kb on + strandat 40.237 kb on + strandat 40.238 kb on - strandat 40.238 kb on - strandat 40.251 kb on + strandat 40.252 kb on - strandat 40.252 kb on - strandat 40.252 kb on - strandat 40.258 kb on - strand, within GFF723at 40.258 kb on - strand, within GFF723at 40.258 kb on - strand, within GFF723at 40.471 kb on + strandat 40.471 kb on + strandat 40.543 kb on + strand, within GFF724at 40.544 kb on - strand, within GFF724at 40.666 kb on + strand, within GFF724at 40.666 kb on + strand, within GFF724at 40.666 kb on + strand, within GFF724at 40.666 kb on + strand, within GFF724at 40.666 kb on + strand, within GFF724at 40.666 kb on + strand, within GFF724at 40.667 kb on - strand, within GFF724at 40.667 kb on - strand, within GFF724at 40.667 kb on - strand, within GFF724at 40.786 kb on + strand, within GFF724at 40.864 kb on + strand, within GFF724at 40.864 kb on + strand, within GFF724at 40.864 kb on + strand, within GFF724at 40.865 kb on - strand, within GFF724at 40.865 kb on - strand, within GFF724at 40.865 kb on - strand, within GFF724at 40.865 kb on - strand, within GFF724at 40.865 kb on - strand, within GFF724at 40.926 kb on - strand, within GFF724at 41.013 kb on - strandat 41.113 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.217 kb on + strand, within GFF725at 41.217 kb on + strand, within GFF725at 41.217 kb on + strand, within GFF725at 41.217 kb on + strand, within GFF725at 41.217 kb on + strand, within GFF725at 41.218 kb on - strand, within GFF725at 41.295 kb on + strand, within GFF725at 41.295 kb on + strand, within GFF725at 41.295 kb on + strand, within GFF725at 41.391 kb on + strand, within GFF725at 41.391 kb on + strand, within GFF725at 41.392 kb on - strand, within GFF725at 41.392 kb on - strand, within GFF725at 41.392 kb on - strand, within GFF725

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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39,306 + -1.0
39,306 + +0.4
39,307 - +0.1
39,307 - -1.3
39,313 - -0.3
39,423 + GFF722 0.17 -0.1
39,423 + GFF722 0.17 -0.5
39,423 + GFF722 0.17 +0.4
39,424 - GFF722 0.17 -0.6
39,424 - GFF722 0.17 +0.1
39,599 + GFF722 0.34 +0.7
39,599 + GFF722 0.34 -1.0
39,972 + GFF722 0.72 +0.5
39,972 + GFF722 0.72 +0.6
39,972 + GFF722 0.72 -0.5
39,972 + GFF722 0.72 -0.3
39,973 - GFF722 0.72 -1.0
39,973 - GFF722 0.72 +0.2
39,973 - GFF722 0.72 -0.9
39,978 + GFF722 0.73 +0.2
39,979 - GFF722 0.73 +0.2
39,979 - GFF722 0.73 +1.1
40,030 - GFF722 0.78 -1.1
40,030 - GFF722 0.78 +1.0
40,095 + GFF722 0.85 -1.0
40,095 + GFF722 0.85 +0.2
40,096 - GFF722 0.85 -1.5
40,096 - GFF722 0.85 -0.6
40,096 - GFF722 0.85 -0.7
40,198 + +1.1
40,221 + -1.7
40,221 + -1.0
40,221 + -0.4
40,222 - +0.4
40,222 - -0.3
40,237 + -1.2
40,237 + +0.0
40,237 + +1.3
40,237 + -0.3
40,238 - +0.2
40,238 - -0.3
40,251 + +0.4
40,252 - +1.2
40,252 - -0.3
40,252 - -1.1
40,258 - GFF723 0.10 +1.8
40,258 - GFF723 0.10 +1.1
40,258 - GFF723 0.10 +0.7
40,471 + -0.3
40,471 + -0.3
40,543 + GFF724 0.18 +0.1
40,544 - GFF724 0.19 +1.3
40,666 + GFF724 0.39 -0.5
40,666 + GFF724 0.39 -0.3
40,666 + GFF724 0.39 +0.4
40,666 + GFF724 0.39 +0.2
40,666 + GFF724 0.39 +0.8
40,666 + GFF724 0.39 -0.2
40,667 - GFF724 0.39 -0.7
40,667 - GFF724 0.39 +1.1
40,667 - GFF724 0.39 +0.2
40,786 + GFF724 0.58 -0.1
40,864 + GFF724 0.71 +0.1
40,864 + GFF724 0.71 +0.3
40,864 + GFF724 0.71 +0.5
40,865 - GFF724 0.71 -0.5
40,865 - GFF724 0.71 -0.2
40,865 - GFF724 0.71 +0.7
40,865 - GFF724 0.71 +0.0
40,865 - GFF724 0.71 +1.7
40,926 - GFF724 0.81 +0.6
41,013 - -0.6
41,113 - +0.0
41,122 - -0.7
41,122 - -0.0
41,122 - -0.3
41,217 + GFF725 0.12 +0.5
41,217 + GFF725 0.12 -0.1
41,217 + GFF725 0.12 +0.3
41,217 + GFF725 0.12 -1.1
41,217 + GFF725 0.12 +0.0
41,218 - GFF725 0.12 -0.2
41,295 + GFF725 0.18 +0.1
41,295 + GFF725 0.18 -1.0
41,295 + GFF725 0.18 -0.3
41,391 + GFF725 0.24 +1.5
41,391 + GFF725 0.24 +0.1
41,392 - GFF725 0.24 +0.1
41,392 - GFF725 0.24 +0.1
41,392 - GFF725 0.24 -0.1

Or see this region's nucleotide sequence