Strain Fitness in Pseudomonas sp. DMC3 around GFF692

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF691 and GFF692 are separated by 319 nucleotidesGFF692 and GFF693 are separated by 249 nucleotides GFF691 - Inner membrane protein YdcO, at 294 to 1,523 GFF691 GFF692 - HTH-type transcriptional repressor RspR, at 1,843 to 2,607 GFF692 GFF693 - Guanine deaminase, at 2,857 to 4,161 GFF693 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.983 kb on + strand, within GFF691at 0.985 kb on + strand, within GFF691at 0.986 kb on - strand, within GFF691at 0.986 kb on - strand, within GFF691at 1.152 kb on + strand, within GFF691at 1.153 kb on - strand, within GFF691at 1.153 kb on - strand, within GFF691at 1.153 kb on - strand, within GFF691at 1.168 kb on + strand, within GFF691at 1.169 kb on - strand, within GFF691at 1.169 kb on - strand, within GFF691at 1.394 kb on - strand, within GFF691at 1.394 kb on - strand, within GFF691at 1.500 kb on + strandat 1.500 kb on + strandat 1.500 kb on + strandat 1.501 kb on - strandat 1.501 kb on - strandat 1.502 kb on + strandat 1.502 kb on + strandat 1.502 kb on + strandat 1.503 kb on - strandat 1.585 kb on - strandat 1.665 kb on + strandat 1.694 kb on - strandat 1.717 kb on + strandat 1.785 kb on + strandat 1.785 kb on + strandat 1.786 kb on - strandat 1.798 kb on + strandat 1.798 kb on + strandat 1.798 kb on + strandat 1.798 kb on + strandat 1.811 kb on + strandat 1.918 kb on - strandat 1.925 kb on - strand, within GFF692at 1.932 kb on + strand, within GFF692at 2.776 kb on - strandat 2.776 kb on - strandat 2.888 kb on + strandat 2.888 kb on + strandat 2.888 kb on + strandat 2.888 kb on + strandat 2.888 kb on + strandat 2.888 kb on + strandat 2.888 kb on + strandat 2.889 kb on - strandat 2.889 kb on - strandat 2.889 kb on - strandat 2.889 kb on - strandat 2.972 kb on + strandat 2.996 kb on + strand, within GFF693at 2.997 kb on - strand, within GFF693at 2.997 kb on - strand, within GFF693at 2.997 kb on - strand, within GFF693at 3.040 kb on - strand, within GFF693at 3.092 kb on + strand, within GFF693at 3.092 kb on + strand, within GFF693at 3.093 kb on - strand, within GFF693at 3.143 kb on + strand, within GFF693at 3.144 kb on - strand, within GFF693at 3.144 kb on - strand, within GFF693at 3.389 kb on + strand, within GFF693at 3.390 kb on - strand, within GFF693at 3.475 kb on - strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.476 kb on + strand, within GFF693at 3.477 kb on - strand, within GFF693at 3.477 kb on - strand, within GFF693at 3.477 kb on - strand, within GFF693at 3.477 kb on - strand, within GFF693at 3.477 kb on - strand, within GFF693

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
983 + GFF691 0.56 -1.3
985 + GFF691 0.56 +0.2
986 - GFF691 0.56 -1.2
986 - GFF691 0.56 +1.2
1,152 + GFF691 0.70 -0.1
1,153 - GFF691 0.70 -1.3
1,153 - GFF691 0.70 +0.9
1,153 - GFF691 0.70 +0.1
1,168 + GFF691 0.71 +0.6
1,169 - GFF691 0.71 -0.3
1,169 - GFF691 0.71 +0.2
1,394 - GFF691 0.89 -1.3
1,394 - GFF691 0.89 -0.1
1,500 + +0.1
1,500 + -1.2
1,500 + -0.7
1,501 - -0.7
1,501 - -0.2
1,502 + +0.7
1,502 + -0.5
1,502 + -0.3
1,503 - -2.6
1,585 - +0.7
1,665 + +0.5
1,694 - +0.3
1,717 + -1.5
1,785 + +0.5
1,785 + -0.7
1,786 - -0.2
1,798 + +0.4
1,798 + +0.0
1,798 + -0.4
1,798 + -0.6
1,811 + +0.5
1,918 - +0.8
1,925 - GFF692 0.11 -0.7
1,932 + GFF692 0.12 -0.8
2,776 - +0.8
2,776 - +1.4
2,888 + +0.3
2,888 + +0.9
2,888 + +0.1
2,888 + +1.0
2,888 + -0.9
2,888 + -0.3
2,888 + +0.1
2,889 - -0.2
2,889 - +0.0
2,889 - +0.8
2,889 - +0.8
2,972 + -0.5
2,996 + GFF693 0.11 -0.5
2,997 - GFF693 0.11 +0.0
2,997 - GFF693 0.11 -0.6
2,997 - GFF693 0.11 -0.1
3,040 - GFF693 0.14 -0.5
3,092 + GFF693 0.18 -0.3
3,092 + GFF693 0.18 -3.0
3,093 - GFF693 0.18 -1.3
3,143 + GFF693 0.22 +1.0
3,144 - GFF693 0.22 -0.6
3,144 - GFF693 0.22 -1.9
3,389 + GFF693 0.41 +1.3
3,390 - GFF693 0.41 +0.1
3,475 - GFF693 0.47 -0.0
3,476 + GFF693 0.47 +0.7
3,476 + GFF693 0.47 -0.4
3,476 + GFF693 0.47 -1.1
3,476 + GFF693 0.47 +1.0
3,476 + GFF693 0.47 -1.2
3,476 + GFF693 0.47 +0.5
3,476 + GFF693 0.47 -0.4
3,476 + GFF693 0.47 +0.8
3,476 + GFF693 0.47 +0.5
3,476 + GFF693 0.47 +0.2
3,477 - GFF693 0.48 +0.1
3,477 - GFF693 0.48 -0.5
3,477 - GFF693 0.48 +0.7
3,477 - GFF693 0.48 +0.5
3,477 - GFF693 0.48 +0.3

Or see this region's nucleotide sequence