Strain Fitness in Pseudomonas sp. DMC3 around GFF676

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF675 and GFF676 are separated by 113 nucleotidesGFF676 and GFF677 overlap by 1 nucleotidesGFF677 and GFF678 are separated by 58 nucleotides GFF675 - HTH-type transcriptional regulator TrpI, at 744,574 to 745,491 GFF675 GFF676 - Tryptophan synthase beta chain, at 745,605 to 746,837 GFF676 GFF677 - Tryptophan synthase alpha chain, at 746,837 to 747,646 GFF677 GFF678 - hypothetical protein, at 747,705 to 749,666 GFF678 Position (kb) 745 746 747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 744.809 kb on + strand, within GFF675at 744.809 kb on + strand, within GFF675at 744.809 kb on + strand, within GFF675at 744.809 kb on + strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.812 kb on + strand, within GFF675at 744.813 kb on - strand, within GFF675at 744.969 kb on + strand, within GFF675at 744.969 kb on + strand, within GFF675at 744.970 kb on - strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.985 kb on + strand, within GFF675at 745.016 kb on + strand, within GFF675at 745.016 kb on + strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.348 kb on + strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.558 kb on + strandat 745.559 kb on - strandat 745.683 kb on + strandat 745.683 kb on + strandat 745.684 kb on - strandat 745.684 kb on - strandat 745.684 kb on - strandat 745.791 kb on + strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.792 kb on - strand, within GFF676at 745.815 kb on + strand, within GFF676at 745.815 kb on + strand, within GFF676at 745.816 kb on - strand, within GFF676at 745.861 kb on - strand, within GFF676at 745.861 kb on - strand, within GFF676at 745.861 kb on - strand, within GFF676at 746.037 kb on + strand, within GFF676at 746.037 kb on + strand, within GFF676at 746.037 kb on + strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.196 kb on + strand, within GFF676at 746.196 kb on + strand, within GFF676at 746.229 kb on + strand, within GFF676at 746.381 kb on + strand, within GFF676at 746.381 kb on + strand, within GFF676at 746.610 kb on + strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.675 kb on + strand, within GFF676at 746.676 kb on - strand, within GFF676at 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.925 kb on - strand, within GFF677at 747.126 kb on + strand, within GFF677at 747.140 kb on + strand, within GFF677at 747.141 kb on - strand, within GFF677at 747.141 kb on - strand, within GFF677at 747.359 kb on + strand, within GFF677at 747.359 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.445 kb on + strand, within GFF677at 747.569 kb on - strandat 747.644 kb on + strandat 747.712 kb on - strandat 747.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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744,809 + GFF675 0.26 -0.3
744,809 + GFF675 0.26 +0.0
744,809 + GFF675 0.26 -0.5
744,809 + GFF675 0.26 -0.2
744,810 - GFF675 0.26 +0.1
744,810 - GFF675 0.26 +0.6
744,810 - GFF675 0.26 +0.2
744,810 - GFF675 0.26 -0.5
744,810 - GFF675 0.26 +0.5
744,812 + GFF675 0.26 +0.2
744,813 - GFF675 0.26 -0.5
744,969 + GFF675 0.43 +0.4
744,969 + GFF675 0.43 -0.8
744,970 - GFF675 0.43 -0.1
744,971 + GFF675 0.43 -0.7
744,971 + GFF675 0.43 +0.4
744,971 + GFF675 0.43 +0.5
744,971 + GFF675 0.43 -0.4
744,972 - GFF675 0.43 -0.4
744,972 - GFF675 0.43 +0.2
744,972 - GFF675 0.43 +0.7
744,972 - GFF675 0.43 -1.2
744,972 - GFF675 0.43 -0.4
744,972 - GFF675 0.43 +0.1
744,972 - GFF675 0.43 +0.3
744,985 + GFF675 0.45 -0.1
745,016 + GFF675 0.48 +1.0
745,016 + GFF675 0.48 -1.2
745,017 - GFF675 0.48 -1.1
745,017 - GFF675 0.48 -0.3
745,017 - GFF675 0.48 +1.2
745,017 - GFF675 0.48 +0.5
745,017 - GFF675 0.48 -0.2
745,017 - GFF675 0.48 +0.1
745,348 + GFF675 0.84 -0.3
745,349 - GFF675 0.84 +0.6
745,349 - GFF675 0.84 +0.3
745,349 - GFF675 0.84 -0.4
745,349 - GFF675 0.84 -0.0
745,558 + +1.1
745,559 - -1.8
745,683 + -2.6
745,683 + -2.4
745,684 - -2.9
745,684 - -3.0
745,684 - -1.5
745,791 + GFF676 0.15 -1.4
745,792 - GFF676 0.15 -0.9
745,792 - GFF676 0.15 -0.7
745,792 - GFF676 0.15 -1.4
745,792 - GFF676 0.15 -2.0
745,792 - GFF676 0.15 -1.4
745,792 - GFF676 0.15 -0.7
745,792 - GFF676 0.15 -1.0
745,815 + GFF676 0.17 -2.4
745,815 + GFF676 0.17 -3.0
745,816 - GFF676 0.17 -0.4
745,861 - GFF676 0.21 -2.7
745,861 - GFF676 0.21 -3.2
745,861 - GFF676 0.21 -1.9
746,037 + GFF676 0.35 -1.6
746,037 + GFF676 0.35 -1.4
746,037 + GFF676 0.35 +0.0
746,038 - GFF676 0.35 -1.9
746,038 - GFF676 0.35 -2.9
746,038 - GFF676 0.35 -3.2
746,038 - GFF676 0.35 -1.9
746,038 - GFF676 0.35 -1.0
746,196 + GFF676 0.48 -2.2
746,196 + GFF676 0.48 -1.6
746,229 + GFF676 0.51 -1.2
746,381 + GFF676 0.63 -1.7
746,381 + GFF676 0.63 -2.2
746,610 + GFF676 0.82 -2.4
746,611 - GFF676 0.82 -1.7
746,611 - GFF676 0.82 -1.7
746,611 - GFF676 0.82 -2.8
746,611 - GFF676 0.82 -1.0
746,611 - GFF676 0.82 -3.2
746,675 + GFF676 0.87 -1.6
746,676 - GFF676 0.87 -0.7
746,807 + +0.3
746,807 + -0.7
746,807 + -1.9
746,807 + +0.8
746,807 + -1.7
746,807 + -1.4
746,807 + -0.4
746,807 + +0.3
746,808 - -2.7
746,808 - -1.4
746,925 - GFF677 0.11 -1.9
747,126 + GFF677 0.36 -4.0
747,140 + GFF677 0.37 -2.4
747,141 - GFF677 0.38 -1.6
747,141 - GFF677 0.38 -1.7
747,359 + GFF677 0.64 -1.7
747,359 + GFF677 0.64 -1.0
747,362 + GFF677 0.65 -0.4
747,362 + GFF677 0.65 +0.6
747,362 + GFF677 0.65 -1.9
747,362 + GFF677 0.65 -2.2
747,362 + GFF677 0.65 -0.7
747,362 + GFF677 0.65 -1.9
747,363 - GFF677 0.65 -0.4
747,363 - GFF677 0.65 -2.6
747,363 - GFF677 0.65 -2.0
747,363 - GFF677 0.65 -2.3
747,363 - GFF677 0.65 -0.4
747,445 + GFF677 0.75 -2.9
747,569 - -1.6
747,644 + +1.3
747,712 - +1.8
747,834 - -0.2

Or see this region's nucleotide sequence