Strain Fitness in Pseudomonas sp. DMC3 around GFF643

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF642 and GFF643 are separated by 253 nucleotidesGFF643 and GFF644 overlap by 4 nucleotidesGFF644 and GFF645 overlap by 13 nucleotides GFF642 - D-methionine-binding lipoprotein MetQ, at 713,810 to 714,580 GFF642 GFF643 - hypothetical protein, at 714,834 to 715,469 GFF643 GFF644 - Protoheme IX farnesyltransferase, at 715,466 to 716,365 GFF644 GFF645 - Heme A synthase, at 716,353 to 717,432 GFF645 Position (kb) 714 715 716Strain fitness (log2 ratio) -2 -1 0 1at 713.975 kb on + strand, within GFF642at 713.976 kb on - strand, within GFF642at 713.991 kb on + strand, within GFF642at 713.992 kb on - strand, within GFF642at 713.992 kb on - strand, within GFF642at 714.024 kb on - strand, within GFF642at 714.042 kb on - strand, within GFF642at 714.042 kb on - strand, within GFF642at 714.042 kb on - strand, within GFF642at 714.042 kb on - strand, within GFF642at 714.120 kb on - strand, within GFF642at 714.377 kb on + strand, within GFF642at 714.377 kb on + strand, within GFF642at 714.377 kb on + strand, within GFF642at 714.377 kb on + strand, within GFF642at 714.378 kb on - strand, within GFF642at 714.378 kb on - strand, within GFF642at 714.443 kb on + strand, within GFF642at 714.444 kb on - strand, within GFF642at 714.551 kb on + strandat 714.551 kb on + strandat 714.552 kb on - strandat 714.803 kb on + strandat 714.820 kb on + strandat 714.858 kb on + strandat 714.961 kb on + strand, within GFF643at 714.962 kb on - strand, within GFF643at 715.034 kb on + strand, within GFF643at 715.034 kb on + strand, within GFF643at 715.073 kb on - strand, within GFF643at 715.226 kb on + strand, within GFF643at 715.226 kb on + strand, within GFF643at 715.226 kb on + strand, within GFF643at 715.227 kb on - strand, within GFF643at 715.227 kb on - strand, within GFF643at 715.228 kb on + strand, within GFF643at 715.341 kb on - strand, within GFF643at 715.397 kb on + strand, within GFF643at 715.397 kb on + strand, within GFF643at 715.397 kb on + strand, within GFF643at 715.398 kb on - strand, within GFF643at 715.469 kb on + strandat 715.469 kb on + strandat 715.470 kb on - strandat 715.470 kb on - strandat 715.481 kb on + strandat 715.481 kb on + strandat 715.482 kb on - strandat 715.482 kb on - strandat 715.482 kb on - strandat 715.482 kb on - strandat 715.482 kb on - strandat 715.482 kb on - strandat 715.482 kb on - strandat 715.485 kb on + strandat 715.485 kb on + strandat 715.485 kb on + strandat 715.485 kb on + strandat 715.485 kb on + strandat 715.486 kb on - strandat 715.486 kb on - strandat 715.486 kb on - strandat 715.486 kb on - strandat 715.493 kb on + strandat 715.494 kb on - strandat 715.494 kb on - strandat 715.524 kb on + strandat 715.524 kb on + strandat 715.524 kb on + strandat 715.524 kb on + strandat 715.527 kb on + strandat 715.528 kb on - strandat 715.528 kb on - strandat 715.528 kb on - strandat 715.528 kb on - strandat 715.528 kb on - strandat 715.528 kb on - strandat 715.528 kb on - strandat 715.531 kb on + strandat 715.532 kb on - strandat 715.532 kb on - strandat 715.532 kb on - strandat 715.532 kb on - strandat 715.536 kb on + strandat 715.537 kb on - strandat 715.579 kb on - strand, within GFF644at 715.579 kb on - strand, within GFF644at 715.635 kb on + strand, within GFF644at 715.635 kb on + strand, within GFF644at 715.635 kb on + strand, within GFF644at 715.662 kb on + strand, within GFF644at 715.662 kb on + strand, within GFF644at 715.662 kb on + strand, within GFF644at 715.662 kb on + strand, within GFF644at 715.662 kb on + strand, within GFF644at 715.663 kb on - strand, within GFF644at 715.698 kb on + strand, within GFF644at 715.698 kb on + strand, within GFF644at 715.699 kb on - strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.722 kb on + strand, within GFF644at 715.723 kb on - strand, within GFF644at 715.723 kb on - strand, within GFF644at 715.723 kb on - strand, within GFF644at 715.723 kb on - strand, within GFF644at 715.770 kb on + strand, within GFF644at 715.771 kb on - strand, within GFF644at 715.771 kb on - strand, within GFF644at 715.771 kb on - strand, within GFF644at 715.963 kb on - strand, within GFF644at 716.132 kb on + strand, within GFF644at 716.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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713,975 + GFF642 0.21 +0.3
713,976 - GFF642 0.22 -0.4
713,991 + GFF642 0.23 -0.3
713,992 - GFF642 0.24 -0.8
713,992 - GFF642 0.24 -1.0
714,024 - GFF642 0.28 +0.5
714,042 - GFF642 0.30 +0.1
714,042 - GFF642 0.30 -0.4
714,042 - GFF642 0.30 +1.4
714,042 - GFF642 0.30 +0.1
714,120 - GFF642 0.40 -1.4
714,377 + GFF642 0.74 +0.9
714,377 + GFF642 0.74 -1.2
714,377 + GFF642 0.74 +0.2
714,377 + GFF642 0.74 -0.5
714,378 - GFF642 0.74 -0.3
714,378 - GFF642 0.74 -1.4
714,443 + GFF642 0.82 -1.5
714,444 - GFF642 0.82 -0.6
714,551 + -0.5
714,551 + +0.6
714,552 - -1.0
714,803 + +1.4
714,820 + +0.3
714,858 + -0.0
714,961 + GFF643 0.20 +0.1
714,962 - GFF643 0.20 +0.8
715,034 + GFF643 0.31 -0.5
715,034 + GFF643 0.31 +1.5
715,073 - GFF643 0.38 +1.1
715,226 + GFF643 0.62 -0.2
715,226 + GFF643 0.62 +0.8
715,226 + GFF643 0.62 +0.8
715,227 - GFF643 0.62 +0.2
715,227 - GFF643 0.62 -1.0
715,228 + GFF643 0.62 +0.2
715,341 - GFF643 0.80 +0.2
715,397 + GFF643 0.89 +1.6
715,397 + GFF643 0.89 -0.1
715,397 + GFF643 0.89 -0.3
715,398 - GFF643 0.89 +0.2
715,469 + +0.2
715,469 + +0.4
715,470 - +0.5
715,470 - -0.3
715,481 + -0.3
715,481 + -0.1
715,482 - -1.4
715,482 - -0.2
715,482 - -0.1
715,482 - -0.6
715,482 - +1.0
715,482 - -0.4
715,482 - -0.6
715,485 + +0.2
715,485 + -1.1
715,485 + -0.7
715,485 + +0.4
715,485 + -0.1
715,486 - +0.3
715,486 - -0.7
715,486 - -1.6
715,486 - +0.0
715,493 + +0.2
715,494 - -0.3
715,494 - -0.6
715,524 + +0.0
715,524 + +0.6
715,524 + -0.8
715,524 + -0.7
715,527 + +0.3
715,528 - -0.9
715,528 - -0.4
715,528 - -0.3
715,528 - +0.2
715,528 - +0.7
715,528 - -0.8
715,528 - +0.3
715,531 + -2.3
715,532 - -0.4
715,532 - -0.0
715,532 - +0.6
715,532 - -0.8
715,536 + +0.3
715,537 - +0.4
715,579 - GFF644 0.13 +0.8
715,579 - GFF644 0.13 -0.2
715,635 + GFF644 0.19 -0.6
715,635 + GFF644 0.19 +0.2
715,635 + GFF644 0.19 -0.4
715,662 + GFF644 0.22 -0.4
715,662 + GFF644 0.22 -0.3
715,662 + GFF644 0.22 +1.6
715,662 + GFF644 0.22 -0.5
715,662 + GFF644 0.22 +0.7
715,663 - GFF644 0.22 +0.0
715,698 + GFF644 0.26 -0.6
715,698 + GFF644 0.26 -0.4
715,699 - GFF644 0.26 -0.1
715,722 + GFF644 0.28 -0.7
715,722 + GFF644 0.28 +0.9
715,722 + GFF644 0.28 +0.9
715,722 + GFF644 0.28 +1.1
715,722 + GFF644 0.28 +0.7
715,722 + GFF644 0.28 +0.4
715,722 + GFF644 0.28 -0.1
715,723 - GFF644 0.29 +0.2
715,723 - GFF644 0.29 +0.0
715,723 - GFF644 0.29 -1.0
715,723 - GFF644 0.29 -1.1
715,770 + GFF644 0.34 -0.5
715,771 - GFF644 0.34 -1.1
715,771 - GFF644 0.34 -0.9
715,771 - GFF644 0.34 +1.2
715,963 - GFF644 0.55 -1.5
716,132 + GFF644 0.74 -0.5
716,317 - -1.5

Or see this region's nucleotide sequence