Strain Fitness in Pseudomonas sp. DMC3 around GFF612

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF611 and GFF612 are separated by 54 nucleotidesGFF612 and GFF613 overlap by 4 nucleotidesGFF613 and GFF614 are separated by 1 nucleotides GFF611 - hypothetical protein, at 680,225 to 681,253 GFF611 GFF612 - hypothetical protein, at 681,308 to 682,456 GFF612 GFF613 - putative ribonucleotide transport ATP-binding protein mkl, at 682,453 to 683,256 GFF613 GFF614 - hypothetical protein, at 683,258 to 684,196 GFF614 Position (kb) 681 682 683Strain fitness (log2 ratio) -3 -2 -1 0 1at 680.597 kb on - strand, within GFF611at 680.615 kb on + strand, within GFF611at 680.616 kb on - strand, within GFF611at 680.616 kb on - strand, within GFF611at 680.616 kb on - strand, within GFF611at 680.616 kb on - strand, within GFF611at 680.616 kb on - strand, within GFF611at 680.616 kb on - strand, within GFF611at 680.990 kb on + strand, within GFF611at 680.996 kb on + strand, within GFF611at 680.996 kb on + strand, within GFF611at 680.996 kb on + strand, within GFF611at 680.996 kb on + strand, within GFF611at 681.038 kb on + strand, within GFF611at 681.252 kb on - strandat 681.266 kb on + strandat 681.267 kb on - strandat 681.267 kb on - strandat 681.267 kb on - strandat 681.269 kb on + strandat 681.269 kb on + strandat 681.269 kb on + strandat 681.270 kb on - strandat 681.270 kb on - strandat 681.270 kb on - strandat 681.270 kb on - strandat 681.270 kb on - strandat 681.273 kb on + strandat 681.273 kb on + strandat 681.273 kb on + strandat 681.273 kb on + strandat 681.273 kb on + strandat 681.273 kb on + strandat 681.274 kb on - strandat 681.274 kb on - strandat 681.274 kb on - strandat 681.274 kb on - strandat 681.292 kb on + strandat 681.292 kb on + strandat 681.293 kb on - strandat 681.293 kb on - strandat 681.307 kb on + strandat 681.307 kb on + strandat 681.307 kb on + strandat 681.308 kb on - strandat 681.308 kb on - strandat 681.308 kb on - strandat 681.401 kb on + strandat 681.402 kb on - strandat 681.444 kb on - strand, within GFF612at 681.444 kb on - strand, within GFF612at 681.605 kb on + strand, within GFF612at 681.605 kb on + strand, within GFF612at 681.605 kb on + strand, within GFF612at 681.606 kb on - strand, within GFF612at 681.606 kb on - strand, within GFF612at 682.019 kb on - strand, within GFF612at 682.345 kb on + strandat 682.558 kb on + strand, within GFF613at 682.558 kb on + strand, within GFF613at 682.558 kb on + strand, within GFF613at 682.558 kb on + strand, within GFF613at 682.558 kb on + strand, within GFF613at 682.558 kb on + strand, within GFF613at 682.559 kb on - strand, within GFF613at 682.559 kb on - strand, within GFF613at 682.559 kb on - strand, within GFF613at 682.559 kb on - strand, within GFF613at 682.559 kb on - strand, within GFF613at 682.559 kb on - strand, within GFF613at 682.889 kb on - strand, within GFF613at 682.991 kb on + strand, within GFF613at 682.991 kb on + strand, within GFF613at 683.092 kb on + strand, within GFF613at 683.092 kb on + strand, within GFF613at 683.092 kb on + strand, within GFF613at 683.093 kb on - strand, within GFF613at 683.093 kb on - strand, within GFF613at 683.093 kb on - strand, within GFF613at 683.093 kb on - strand, within GFF613at 683.093 kb on - strand, within GFF613at 683.152 kb on - strand, within GFF613at 683.194 kb on + strandat 683.195 kb on - strandat 683.376 kb on - strand, within GFF614at 683.376 kb on - strand, within GFF614at 683.432 kb on + strand, within GFF614

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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680,597 - GFF611 0.36 -0.8
680,615 + GFF611 0.38 +0.6
680,616 - GFF611 0.38 -0.2
680,616 - GFF611 0.38 +0.5
680,616 - GFF611 0.38 +1.1
680,616 - GFF611 0.38 -0.4
680,616 - GFF611 0.38 +0.2
680,616 - GFF611 0.38 -1.0
680,990 + GFF611 0.74 +0.5
680,996 + GFF611 0.75 -0.2
680,996 + GFF611 0.75 -0.1
680,996 + GFF611 0.75 -2.4
680,996 + GFF611 0.75 -0.3
681,038 + GFF611 0.79 +1.4
681,252 - +0.6
681,266 + -0.5
681,267 - -0.8
681,267 - -0.1
681,267 - -1.4
681,269 + -1.0
681,269 + -0.5
681,269 + -0.4
681,270 - -0.5
681,270 - -1.3
681,270 - +0.4
681,270 - -0.7
681,270 - +0.8
681,273 + -0.3
681,273 + +0.7
681,273 + +0.3
681,273 + -1.2
681,273 + -2.9
681,273 + -1.1
681,274 - +0.0
681,274 - +0.6
681,274 - -0.1
681,274 - +0.5
681,292 + +0.3
681,292 + +0.1
681,293 - -1.0
681,293 - -0.3
681,307 + +0.5
681,307 + +0.8
681,307 + +0.0
681,308 - +0.5
681,308 - -1.2
681,308 - -0.7
681,401 + +0.6
681,402 - +1.1
681,444 - GFF612 0.12 +0.6
681,444 - GFF612 0.12 +0.2
681,605 + GFF612 0.26 -0.4
681,605 + GFF612 0.26 +0.8
681,605 + GFF612 0.26 -0.1
681,606 - GFF612 0.26 +1.7
681,606 - GFF612 0.26 +0.4
682,019 - GFF612 0.62 +0.5
682,345 + +0.7
682,558 + GFF613 0.13 +0.3
682,558 + GFF613 0.13 +0.1
682,558 + GFF613 0.13 -0.5
682,558 + GFF613 0.13 -0.4
682,558 + GFF613 0.13 +0.2
682,558 + GFF613 0.13 +0.2
682,559 - GFF613 0.13 -1.7
682,559 - GFF613 0.13 -0.3
682,559 - GFF613 0.13 +1.0
682,559 - GFF613 0.13 +0.1
682,559 - GFF613 0.13 -0.2
682,559 - GFF613 0.13 -0.3
682,889 - GFF613 0.54 -0.4
682,991 + GFF613 0.67 -0.5
682,991 + GFF613 0.67 -0.1
683,092 + GFF613 0.79 -0.6
683,092 + GFF613 0.79 +0.4
683,092 + GFF613 0.79 -0.6
683,093 - GFF613 0.80 +0.6
683,093 - GFF613 0.80 -1.5
683,093 - GFF613 0.80 -0.6
683,093 - GFF613 0.80 +1.6
683,093 - GFF613 0.80 +0.8
683,152 - GFF613 0.87 +0.6
683,194 + +0.0
683,195 - -0.4
683,376 - GFF614 0.13 +0.7
683,376 - GFF614 0.13 -1.1
683,432 + GFF614 0.19 -0.8

Or see this region's nucleotide sequence