Strain Fitness in Pseudomonas sp. DMC3 around GFF57

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF55 and GFF56 are separated by 12 nucleotidesGFF56 and GFF57 are separated by 38 nucleotidesGFF57 and GFF58 are separated by 117 nucleotidesGFF58 and GFF59 are separated by 81 nucleotides GFF55 - Tryptophan 2-monooxygenase, at 62,324 to 64,006 GFF55 GFF56 - (R)-stereoselective amidase, at 64,019 to 64,813 GFF56 GFF57 - hypothetical protein, at 64,852 to 67,263 GFF57 GFF58 - Coenzyme PQQ synthesis protein A, at 67,381 to 67,494 GFF58 GFF59 - Coenzyme PQQ synthesis protein B, at 67,576 to 68,487 GFF59 Position (kb) 64 65 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 63.943 kb on + strandat 63.943 kb on + strandat 63.943 kb on + strandat 63.943 kb on + strandat 63.943 kb on + strandat 63.943 kb on + strandat 63.943 kb on + strandat 63.944 kb on - strandat 63.944 kb on - strandat 64.004 kb on + strandat 64.005 kb on - strandat 64.035 kb on - strandat 64.035 kb on - strandat 64.152 kb on - strand, within GFF56at 64.193 kb on + strand, within GFF56at 64.193 kb on + strand, within GFF56at 64.194 kb on - strand, within GFF56at 64.194 kb on - strand, within GFF56at 64.194 kb on - strand, within GFF56at 64.256 kb on + strand, within GFF56at 64.257 kb on - strand, within GFF56at 64.289 kb on - strand, within GFF56at 64.292 kb on + strand, within GFF56at 64.292 kb on + strand, within GFF56at 64.293 kb on - strand, within GFF56at 64.293 kb on - strand, within GFF56at 64.293 kb on - strand, within GFF56at 64.293 kb on - strand, within GFF56at 64.341 kb on - strand, within GFF56at 64.341 kb on - strand, within GFF56at 64.451 kb on + strand, within GFF56at 64.451 kb on + strand, within GFF56at 64.451 kb on + strand, within GFF56at 64.592 kb on + strand, within GFF56at 64.592 kb on + strand, within GFF56at 64.592 kb on + strand, within GFF56at 64.592 kb on + strand, within GFF56at 64.592 kb on + strand, within GFF56at 64.592 kb on + strand, within GFF56at 64.593 kb on - strand, within GFF56at 64.602 kb on - strand, within GFF56at 64.637 kb on + strand, within GFF56at 64.637 kb on + strand, within GFF56at 64.811 kb on + strandat 65.075 kb on - strandat 65.075 kb on - strandat 65.122 kb on - strand, within GFF57at 65.205 kb on + strand, within GFF57at 65.205 kb on + strand, within GFF57at 65.205 kb on + strand, within GFF57at 65.206 kb on - strand, within GFF57at 65.206 kb on - strand, within GFF57at 65.206 kb on - strand, within GFF57at 65.206 kb on - strand, within GFF57at 65.206 kb on - strand, within GFF57at 65.206 kb on - strand, within GFF57at 65.302 kb on + strand, within GFF57at 65.302 kb on + strand, within GFF57at 65.302 kb on + strand, within GFF57at 65.302 kb on + strand, within GFF57at 65.303 kb on - strand, within GFF57at 65.303 kb on - strand, within GFF57at 65.303 kb on - strand, within GFF57at 65.313 kb on - strand, within GFF57at 65.313 kb on - strand, within GFF57at 65.464 kb on - strand, within GFF57at 65.464 kb on - strand, within GFF57at 65.521 kb on - strand, within GFF57at 65.564 kb on - strand, within GFF57at 65.594 kb on + strand, within GFF57at 65.594 kb on + strand, within GFF57at 65.595 kb on - strand, within GFF57at 65.661 kb on + strand, within GFF57at 65.662 kb on - strand, within GFF57at 65.689 kb on + strand, within GFF57at 65.689 kb on + strand, within GFF57at 65.689 kb on + strand, within GFF57at 65.689 kb on + strand, within GFF57at 65.737 kb on + strand, within GFF57at 65.873 kb on - strand, within GFF57at 65.873 kb on - strand, within GFF57at 66.223 kb on + strand, within GFF57at 66.223 kb on + strand, within GFF57at 66.427 kb on - strand, within GFF57at 66.427 kb on - strand, within GFF57at 66.427 kb on - strand, within GFF57at 66.465 kb on - strand, within GFF57at 66.465 kb on - strand, within GFF57at 66.488 kb on + strand, within GFF57at 66.489 kb on - strand, within GFF57at 66.489 kb on - strand, within GFF57at 66.584 kb on + strand, within GFF57at 66.584 kb on + strand, within GFF57at 66.584 kb on + strand, within GFF57at 66.735 kb on - strand, within GFF57at 66.817 kb on + strand, within GFF57at 67.008 kb on + strand, within GFF57at 67.008 kb on + strand, within GFF57at 67.118 kb on - strandat 67.327 kb on + strandat 67.332 kb on + strandat 67.333 kb on - strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.345 kb on - strandat 67.374 kb on + strandat 67.374 kb on + strandat 67.374 kb on + strandat 67.374 kb on + strandat 67.375 kb on - strandat 67.375 kb on - strandat 67.375 kb on - strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.376 kb on + strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.377 kb on - strandat 67.380 kb on + strandat 67.380 kb on + strandat 67.381 kb on - strandat 67.381 kb on - strandat 67.381 kb on - strandat 67.441 kb on + strand, within GFF58at 67.441 kb on + strand, within GFF58at 67.441 kb on + strand, within GFF58at 67.441 kb on + strand, within GFF58at 67.441 kb on + strand, within GFF58at 67.441 kb on + strand, within GFF58at 67.442 kb on - strand, within GFF58at 67.442 kb on - strand, within GFF58at 67.442 kb on - strand, within GFF58at 67.442 kb on - strand, within GFF58at 67.442 kb on - strand, within GFF58at 67.477 kb on + strand, within GFF58at 67.477 kb on + strand, within GFF58at 67.477 kb on + strand, within GFF58at 67.477 kb on + strand, within GFF58at 67.477 kb on + strand, within GFF58at 67.478 kb on - strand, within GFF58at 67.478 kb on - strand, within GFF58at 67.478 kb on - strand, within GFF58at 67.478 kb on - strand, within GFF58at 67.478 kb on - strand, within GFF58at 67.478 kb on - strand, within GFF58at 67.478 kb on - strand, within GFF58at 68.161 kb on + strand, within GFF59at 68.161 kb on + strand, within GFF59at 68.161 kb on + strand, within GFF59at 68.162 kb on - strand, within GFF59at 68.162 kb on - strand, within GFF59at 68.162 kb on - strand, within GFF59

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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63,943 + +0.5
63,943 + -0.1
63,943 + +0.0
63,943 + -0.1
63,943 + +0.4
63,943 + -1.3
63,943 + +0.3
63,944 - +0.2
63,944 - +1.2
64,004 + +0.5
64,005 - +0.3
64,035 - -0.1
64,035 - +0.2
64,152 - GFF56 0.17 +1.0
64,193 + GFF56 0.22 +0.7
64,193 + GFF56 0.22 +0.2
64,194 - GFF56 0.22 +0.3
64,194 - GFF56 0.22 -0.5
64,194 - GFF56 0.22 +0.5
64,256 + GFF56 0.30 +0.9
64,257 - GFF56 0.30 -1.4
64,289 - GFF56 0.34 +0.7
64,292 + GFF56 0.34 -1.3
64,292 + GFF56 0.34 -0.8
64,293 - GFF56 0.34 -0.2
64,293 - GFF56 0.34 -0.4
64,293 - GFF56 0.34 +0.2
64,293 - GFF56 0.34 +0.1
64,341 - GFF56 0.41 +0.1
64,341 - GFF56 0.41 +1.3
64,451 + GFF56 0.54 -0.2
64,451 + GFF56 0.54 -0.7
64,451 + GFF56 0.54 -0.3
64,592 + GFF56 0.72 -0.4
64,592 + GFF56 0.72 +0.4
64,592 + GFF56 0.72 -0.3
64,592 + GFF56 0.72 -0.7
64,592 + GFF56 0.72 +0.0
64,592 + GFF56 0.72 +0.5
64,593 - GFF56 0.72 +1.0
64,602 - GFF56 0.73 -0.8
64,637 + GFF56 0.78 -0.2
64,637 + GFF56 0.78 -0.5
64,811 + +0.6
65,075 - +0.6
65,075 - +0.4
65,122 - GFF57 0.11 +1.2
65,205 + GFF57 0.15 +0.7
65,205 + GFF57 0.15 +0.2
65,205 + GFF57 0.15 +0.2
65,206 - GFF57 0.15 +0.0
65,206 - GFF57 0.15 -0.1
65,206 - GFF57 0.15 +0.4
65,206 - GFF57 0.15 +0.6
65,206 - GFF57 0.15 +2.3
65,206 - GFF57 0.15 +0.4
65,302 + GFF57 0.19 -0.7
65,302 + GFF57 0.19 -0.4
65,302 + GFF57 0.19 +1.2
65,302 + GFF57 0.19 +0.1
65,303 - GFF57 0.19 +0.7
65,303 - GFF57 0.19 +1.3
65,303 - GFF57 0.19 +0.0
65,313 - GFF57 0.19 +0.4
65,313 - GFF57 0.19 +0.5
65,464 - GFF57 0.25 -0.2
65,464 - GFF57 0.25 +0.3
65,521 - GFF57 0.28 +0.9
65,564 - GFF57 0.30 -0.6
65,594 + GFF57 0.31 +0.3
65,594 + GFF57 0.31 -0.6
65,595 - GFF57 0.31 -0.1
65,661 + GFF57 0.34 +0.6
65,662 - GFF57 0.34 +2.3
65,689 + GFF57 0.35 +0.0
65,689 + GFF57 0.35 +0.5
65,689 + GFF57 0.35 +1.2
65,689 + GFF57 0.35 -1.8
65,737 + GFF57 0.37 +0.4
65,873 - GFF57 0.42 -0.6
65,873 - GFF57 0.42 +0.4
66,223 + GFF57 0.57 -0.7
66,223 + GFF57 0.57 -0.5
66,427 - GFF57 0.65 +0.1
66,427 - GFF57 0.65 -0.0
66,427 - GFF57 0.65 +0.4
66,465 - GFF57 0.67 +1.2
66,465 - GFF57 0.67 +0.5
66,488 + GFF57 0.68 +1.1
66,489 - GFF57 0.68 +0.4
66,489 - GFF57 0.68 -0.1
66,584 + GFF57 0.72 +0.5
66,584 + GFF57 0.72 +0.3
66,584 + GFF57 0.72 +0.8
66,735 - GFF57 0.78 +0.7
66,817 + GFF57 0.81 +0.8
67,008 + GFF57 0.89 -0.1
67,008 + GFF57 0.89 -0.3
67,118 - +0.1
67,327 + -0.7
67,332 + +1.2
67,333 - -0.1
67,344 + +0.0
67,344 + +1.1
67,345 - +0.3
67,374 + +0.7
67,374 + -0.5
67,374 + -0.7
67,374 + +0.3
67,375 - +1.3
67,375 - +0.7
67,375 - -0.8
67,376 + -0.8
67,376 + -0.4
67,376 + -1.0
67,376 + -0.4
67,376 + +0.4
67,376 + -0.4
67,376 + -0.5
67,376 + -1.4
67,376 + +1.5
67,376 + +0.8
67,376 + -1.1
67,377 - +0.4
67,377 - -0.5
67,377 - -0.8
67,377 - -0.2
67,377 - +0.9
67,377 - +0.2
67,377 - -1.2
67,377 - -0.7
67,377 - -0.3
67,377 - -0.6
67,377 - +0.2
67,377 - -0.2
67,377 - -0.8
67,377 - +0.2
67,377 - +0.4
67,380 + -0.2
67,380 + -0.5
67,381 - +1.3
67,381 - +0.3
67,381 - -0.1
67,441 + GFF58 0.53 -0.1
67,441 + GFF58 0.53 +0.5
67,441 + GFF58 0.53 -0.8
67,441 + GFF58 0.53 +0.3
67,441 + GFF58 0.53 +0.5
67,441 + GFF58 0.53 +0.9
67,442 - GFF58 0.54 -0.1
67,442 - GFF58 0.54 -0.0
67,442 - GFF58 0.54 -0.6
67,442 - GFF58 0.54 +0.4
67,442 - GFF58 0.54 +0.3
67,477 + GFF58 0.84 +0.5
67,477 + GFF58 0.84 -0.2
67,477 + GFF58 0.84 -0.5
67,477 + GFF58 0.84 -0.1
67,477 + GFF58 0.84 +0.3
67,478 - GFF58 0.85 +1.2
67,478 - GFF58 0.85 +0.3
67,478 - GFF58 0.85 +0.6
67,478 - GFF58 0.85 +0.1
67,478 - GFF58 0.85 -0.1
67,478 - GFF58 0.85 +0.5
67,478 - GFF58 0.85 -0.5
68,161 + GFF59 0.64 +0.3
68,161 + GFF59 0.64 +0.8
68,161 + GFF59 0.64 +0.0
68,162 - GFF59 0.64 +0.6
68,162 - GFF59 0.64 -0.3
68,162 - GFF59 0.64 +0.5

Or see this region's nucleotide sequence