Strain Fitness in Pseudomonas sp. DMC3 around GFF519

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF517 and GFF518 are separated by 117 nucleotidesGFF518 and GFF519 are separated by 6 nucleotidesGFF519 and GFF520 are separated by 40 nucleotidesGFF520 and GFF521 are separated by 4 nucleotides GFF517 - Pyridoxal kinase PdxY, at 575,361 to 576,233 GFF517 GFF518 - hypothetical protein, at 576,351 to 576,764 GFF518 GFF519 - Zinc-binding GTPase YeiR, at 576,771 to 577,736 GFF519 GFF520 - hypothetical protein, at 577,777 to 578,133 GFF520 GFF521 - hypothetical protein, at 578,138 to 578,788 GFF521 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 575.903 kb on - strand, within GFF517at 575.981 kb on - strand, within GFF517at 576.006 kb on - strand, within GFF517at 576.088 kb on + strand, within GFF517at 576.088 kb on + strand, within GFF517at 576.088 kb on + strand, within GFF517at 576.088 kb on + strand, within GFF517at 576.089 kb on - strand, within GFF517at 576.224 kb on + strandat 576.224 kb on + strandat 576.225 kb on - strandat 576.247 kb on + strandat 576.276 kb on - strandat 576.296 kb on + strandat 576.296 kb on + strandat 576.297 kb on - strandat 576.297 kb on - strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.318 kb on + strandat 576.319 kb on - strandat 576.319 kb on - strandat 576.319 kb on - strandat 576.348 kb on + strandat 576.348 kb on + strandat 576.348 kb on + strandat 576.348 kb on + strandat 576.349 kb on - strandat 576.349 kb on - strandat 576.409 kb on + strand, within GFF518at 576.410 kb on - strand, within GFF518at 576.410 kb on - strand, within GFF518at 576.561 kb on + strand, within GFF518at 576.561 kb on + strand, within GFF518at 576.561 kb on + strand, within GFF518at 576.561 kb on + strand, within GFF518at 576.561 kb on + strand, within GFF518at 576.746 kb on + strandat 576.746 kb on + strandat 576.746 kb on + strandat 576.746 kb on + strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.747 kb on - strandat 576.935 kb on + strand, within GFF519at 577.000 kb on - strand, within GFF519at 577.454 kb on + strand, within GFF519at 577.454 kb on + strand, within GFF519at 577.743 kb on + strandat 577.760 kb on + strandat 577.969 kb on + strand, within GFF520at 577.969 kb on + strand, within GFF520at 577.969 kb on + strand, within GFF520at 577.969 kb on + strand, within GFF520at 577.969 kb on + strand, within GFF520at 577.969 kb on + strand, within GFF520at 577.970 kb on - strand, within GFF520at 577.970 kb on - strand, within GFF520at 578.028 kb on + strand, within GFF520at 578.028 kb on + strand, within GFF520at 578.028 kb on + strand, within GFF520at 578.029 kb on - strand, within GFF520at 578.053 kb on + strand, within GFF520at 578.053 kb on + strand, within GFF520at 578.057 kb on - strand, within GFF520at 578.080 kb on + strand, within GFF520at 578.080 kb on + strand, within GFF520at 578.238 kb on + strand, within GFF521at 578.373 kb on + strand, within GFF521at 578.373 kb on + strand, within GFF521at 578.373 kb on + strand, within GFF521at 578.374 kb on - strand, within GFF521at 578.374 kb on - strand, within GFF521at 578.670 kb on - strand, within GFF521

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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575,903 - GFF517 0.62 -0.8
575,981 - GFF517 0.71 +0.9
576,006 - GFF517 0.74 +1.3
576,088 + GFF517 0.83 +1.6
576,088 + GFF517 0.83 -0.7
576,088 + GFF517 0.83 -0.1
576,088 + GFF517 0.83 -0.7
576,089 - GFF517 0.83 +0.2
576,224 + +0.1
576,224 + -0.2
576,225 - -0.6
576,247 + -0.3
576,276 - -0.1
576,296 + +0.3
576,296 + -3.0
576,297 - -0.4
576,297 - -0.4
576,318 + -0.8
576,318 + -1.0
576,318 + -0.1
576,318 + -0.4
576,318 + +0.2
576,318 + -0.6
576,318 + -0.4
576,318 + +0.3
576,319 - +0.3
576,319 - +0.0
576,319 - +2.2
576,348 + +0.5
576,348 + -0.8
576,348 + -0.1
576,348 + +0.3
576,349 - +0.5
576,349 - +0.3
576,409 + GFF518 0.14 -0.8
576,410 - GFF518 0.14 -0.6
576,410 - GFF518 0.14 -0.1
576,561 + GFF518 0.51 +0.6
576,561 + GFF518 0.51 -0.5
576,561 + GFF518 0.51 -0.4
576,561 + GFF518 0.51 +0.1
576,561 + GFF518 0.51 -0.2
576,746 + +1.0
576,746 + -0.8
576,746 + -0.2
576,746 + -1.2
576,747 - -0.6
576,747 - +1.7
576,747 - -2.0
576,747 - +0.3
576,747 - +0.4
576,747 - -0.4
576,747 - +0.0
576,747 - -1.9
576,747 - -0.6
576,747 - -2.6
576,747 - -0.7
576,935 + GFF519 0.17 +1.3
577,000 - GFF519 0.24 +0.9
577,454 + GFF519 0.71 +0.4
577,454 + GFF519 0.71 -0.2
577,743 + +2.9
577,760 + -0.3
577,969 + GFF520 0.54 +1.0
577,969 + GFF520 0.54 +0.4
577,969 + GFF520 0.54 -1.5
577,969 + GFF520 0.54 -0.9
577,969 + GFF520 0.54 +0.9
577,969 + GFF520 0.54 -0.5
577,970 - GFF520 0.54 -0.3
577,970 - GFF520 0.54 +0.5
578,028 + GFF520 0.70 -0.4
578,028 + GFF520 0.70 -0.4
578,028 + GFF520 0.70 +0.7
578,029 - GFF520 0.71 -0.1
578,053 + GFF520 0.77 +0.7
578,053 + GFF520 0.77 -1.1
578,057 - GFF520 0.78 -0.1
578,080 + GFF520 0.85 -0.6
578,080 + GFF520 0.85 -0.5
578,238 + GFF521 0.15 -0.1
578,373 + GFF521 0.36 +0.7
578,373 + GFF521 0.36 -1.6
578,373 + GFF521 0.36 +0.8
578,374 - GFF521 0.36 -0.3
578,374 - GFF521 0.36 +1.6
578,670 - GFF521 0.82 +0.2

Or see this region's nucleotide sequence