Strain Fitness in Pseudomonas sp. DMC3 around GFF4980

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4977 and GFF4978 overlap by 4 nucleotidesGFF4978 and GFF4979 are separated by 28 nucleotidesGFF4979 and GFF4980 are separated by 9 nucleotidesGFF4980 and GFF4981 are separated by 101 nucleotidesGFF4981 and GFF4982 are separated by 193 nucleotides GFF4977 - Carbamoyl-phosphate synthase large chain, at 82,303 to 85,524 GFF4977 GFF4978 - Transcription elongation factor GreA, at 85,521 to 86,003 GFF4978 GFF4979 - hypothetical protein, at 86,032 to 86,436 GFF4979 GFF4980 - RNA-binding protein, at 86,446 to 86,754 GFF4980 GFF4981 - Ribosomal RNA large subunit methyltransferase E, at 86,856 to 87,485 GFF4981 GFF4982 - ATP-dependent zinc metalloprotease FtsH, at 87,679 to 89,595 GFF4982 Position (kb) 86 87Strain fitness (log2 ratio) -1 0 1at 85.502 kb on + strandat 85.502 kb on + strandat 85.502 kb on + strandat 85.528 kb on + strandat 85.529 kb on - strandat 85.529 kb on - strandat 85.536 kb on + strandat 85.537 kb on - strandat 85.668 kb on + strand, within GFF4978at 85.668 kb on + strand, within GFF4978at 85.669 kb on - strand, within GFF4978at 85.669 kb on - strand, within GFF4978at 85.710 kb on - strand, within GFF4978at 85.839 kb on + strand, within GFF4978at 85.839 kb on + strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 86.072 kb on + strandat 86.073 kb on - strand, within GFF4979at 86.073 kb on - strand, within GFF4979at 86.073 kb on - strand, within GFF4979at 86.073 kb on - strand, within GFF4979at 86.085 kb on + strand, within GFF4979at 86.085 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.216 kb on + strand, within GFF4979at 86.216 kb on + strand, within GFF4979at 86.217 kb on - strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.281 kb on + strand, within GFF4979at 86.281 kb on + strand, within GFF4979at 86.281 kb on + strand, within GFF4979at 86.282 kb on - strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.297 kb on - strand, within GFF4979at 86.297 kb on - strand, within GFF4979at 86.297 kb on - strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.343 kb on - strand, within GFF4979at 86.343 kb on - strand, within GFF4979at 86.343 kb on - strand, within GFF4979at 86.501 kb on + strand, within GFF4980at 86.501 kb on + strand, within GFF4980at 86.723 kb on + strand, within GFF4980at 86.723 kb on + strand, within GFF4980at 86.754 kb on + strandat 86.826 kb on + strandat 86.826 kb on + strandat 87.483 kb on + strandat 87.520 kb on + strandat 87.538 kb on + strandat 87.539 kb on - strandat 87.546 kb on + strandat 87.547 kb on - strandat 87.547 kb on - strandat 87.599 kb on + strandat 87.599 kb on + strandat 87.600 kb on - strandat 87.603 kb on + strandat 87.603 kb on + strandat 87.603 kb on + strandat 87.603 kb on + strandat 87.604 kb on - strandat 87.604 kb on - strandat 87.608 kb on + strandat 87.608 kb on + strandat 87.608 kb on + strandat 87.608 kb on + strandat 87.608 kb on + strandat 87.608 kb on + strandat 87.609 kb on - strandat 87.611 kb on + strandat 87.611 kb on + strandat 87.611 kb on + strandat 87.611 kb on + strandat 87.611 kb on + strandat 87.612 kb on - strandat 87.628 kb on + strandat 87.629 kb on - strandat 87.672 kb on + strandat 87.676 kb on + strandat 87.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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85,502 + +0.4
85,502 + +0.6
85,502 + +0.5
85,528 + -0.6
85,529 - +1.0
85,529 - -1.3
85,536 + +1.2
85,537 - -0.3
85,668 + GFF4978 0.30 +1.1
85,668 + GFF4978 0.30 -1.2
85,669 - GFF4978 0.31 +0.5
85,669 - GFF4978 0.31 -0.1
85,710 - GFF4978 0.39 -0.1
85,839 + GFF4978 0.66 -0.8
85,839 + GFF4978 0.66 -1.3
85,840 - GFF4978 0.66 +0.2
85,840 - GFF4978 0.66 +0.5
85,840 - GFF4978 0.66 +0.8
85,840 - GFF4978 0.66 -0.3
85,840 - GFF4978 0.66 +0.1
86,072 + -0.0
86,073 - GFF4979 0.10 -0.5
86,073 - GFF4979 0.10 -0.1
86,073 - GFF4979 0.10 -0.3
86,073 - GFF4979 0.10 +1.5
86,085 + GFF4979 0.13 +0.5
86,085 + GFF4979 0.13 -0.6
86,087 + GFF4979 0.14 -0.4
86,087 + GFF4979 0.14 +0.1
86,087 + GFF4979 0.14 +0.7
86,087 + GFF4979 0.14 +1.2
86,088 - GFF4979 0.14 -0.5
86,088 - GFF4979 0.14 -1.2
86,088 - GFF4979 0.14 -0.8
86,088 - GFF4979 0.14 -0.4
86,088 - GFF4979 0.14 -0.1
86,088 - GFF4979 0.14 -0.5
86,216 + GFF4979 0.45 -0.2
86,216 + GFF4979 0.45 -1.5
86,217 - GFF4979 0.46 -0.0
86,240 + GFF4979 0.51 +0.3
86,240 + GFF4979 0.51 -0.6
86,240 + GFF4979 0.51 -0.2
86,240 + GFF4979 0.51 -0.0
86,281 + GFF4979 0.61 -0.1
86,281 + GFF4979 0.61 +0.5
86,281 + GFF4979 0.61 +0.7
86,282 - GFF4979 0.62 +0.5
86,296 + GFF4979 0.65 +0.4
86,296 + GFF4979 0.65 +0.0
86,296 + GFF4979 0.65 -0.4
86,296 + GFF4979 0.65 -0.2
86,297 - GFF4979 0.65 -0.1
86,297 - GFF4979 0.65 -0.2
86,297 - GFF4979 0.65 +0.4
86,342 + GFF4979 0.77 -0.8
86,342 + GFF4979 0.77 +0.6
86,342 + GFF4979 0.77 -0.7
86,342 + GFF4979 0.77 -0.3
86,343 - GFF4979 0.77 +1.3
86,343 - GFF4979 0.77 +0.9
86,343 - GFF4979 0.77 -0.5
86,501 + GFF4980 0.18 -1.1
86,501 + GFF4980 0.18 +0.5
86,723 + GFF4980 0.90 +0.6
86,723 + GFF4980 0.90 +0.7
86,754 + -0.1
86,826 + -0.1
86,826 + -0.1
87,483 + +1.0
87,520 + +0.9
87,538 + +0.4
87,539 - -0.7
87,546 + +0.7
87,547 - +0.3
87,547 - -0.8
87,599 + +0.2
87,599 + +0.4
87,600 - +0.5
87,603 + +1.1
87,603 + +1.5
87,603 + -0.3
87,603 + -1.5
87,604 - -0.5
87,604 - -0.2
87,608 + +0.3
87,608 + -0.6
87,608 + -0.9
87,608 + +0.4
87,608 + +0.2
87,608 + +1.4
87,609 - -0.1
87,611 + +0.3
87,611 + -0.2
87,611 + -0.6
87,611 + +0.8
87,611 + -0.8
87,612 - -0.5
87,628 + -0.2
87,629 - +0.3
87,672 + -0.6
87,676 + -0.0
87,676 + -0.7

Or see this region's nucleotide sequence