Strain Fitness in Pseudomonas sp. DMC3 around GFF4962

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4961 and GFF4962 overlap by 4 nucleotidesGFF4962 and GFF4963 are separated by 149 nucleotides GFF4961 - Lactate utilization protein B, at 64,838 to 66,295 GFF4961 GFF4962 - Lactate utilization protein A, at 66,292 to 67,116 GFF4962 GFF4963 - Glycolate permease GlcA, at 67,266 to 68,960 GFF4963 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.301 kb on + strand, within GFF4961at 65.301 kb on + strand, within GFF4961at 65.302 kb on - strand, within GFF4961at 65.302 kb on - strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.573 kb on - strand, within GFF4961at 65.748 kb on + strand, within GFF4961at 65.749 kb on - strand, within GFF4961at 65.749 kb on - strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.816 kb on - strand, within GFF4961at 65.856 kb on + strand, within GFF4961at 65.856 kb on + strand, within GFF4961at 65.856 kb on + strand, within GFF4961at 65.856 kb on + strand, within GFF4961at 65.857 kb on - strand, within GFF4961at 65.857 kb on - strand, within GFF4961at 66.260 kb on + strandat 66.260 kb on + strandat 66.277 kb on + strandat 66.277 kb on + strandat 66.277 kb on + strandat 66.277 kb on + strandat 66.278 kb on - strandat 66.278 kb on - strandat 66.278 kb on - strandat 66.412 kb on + strand, within GFF4962at 66.412 kb on + strand, within GFF4962at 66.412 kb on + strand, within GFF4962at 66.412 kb on + strand, within GFF4962at 66.412 kb on + strand, within GFF4962at 66.413 kb on - strand, within GFF4962at 66.483 kb on + strand, within GFF4962at 66.483 kb on + strand, within GFF4962at 66.484 kb on - strand, within GFF4962at 66.701 kb on + strand, within GFF4962at 66.701 kb on + strand, within GFF4962at 66.702 kb on - strand, within GFF4962at 66.767 kb on + strand, within GFF4962at 66.875 kb on + strand, within GFF4962at 66.923 kb on + strand, within GFF4962at 66.983 kb on + strand, within GFF4962at 67.016 kb on + strand, within GFF4962at 67.016 kb on + strand, within GFF4962at 67.016 kb on + strand, within GFF4962at 67.016 kb on + strand, within GFF4962at 67.017 kb on - strand, within GFF4962at 67.168 kb on - strandat 67.169 kb on + strandat 67.170 kb on - strandat 67.170 kb on - strandat 67.170 kb on - strandat 67.195 kb on - strandat 67.195 kb on - strandat 67.245 kb on - strandat 67.262 kb on - strandat 67.267 kb on + strandat 67.268 kb on - strandat 67.268 kb on - strandat 67.338 kb on + strandat 67.544 kb on + strand, within GFF4963at 67.544 kb on + strand, within GFF4963at 67.545 kb on - strand, within GFF4963at 67.545 kb on - strand, within GFF4963at 67.654 kb on + strand, within GFF4963at 67.655 kb on - strand, within GFF4963at 67.655 kb on - strand, within GFF4963at 67.717 kb on + strand, within GFF4963at 67.717 kb on + strand, within GFF4963at 67.717 kb on + strand, within GFF4963at 67.717 kb on + strand, within GFF4963at 67.717 kb on + strand, within GFF4963at 67.717 kb on + strand, within GFF4963at 67.718 kb on - strand, within GFF4963at 67.718 kb on - strand, within GFF4963at 67.767 kb on + strand, within GFF4963at 67.767 kb on + strand, within GFF4963at 67.930 kb on + strand, within GFF4963at 67.930 kb on + strand, within GFF4963at 67.930 kb on + strand, within GFF4963at 67.930 kb on + strand, within GFF4963at 67.930 kb on + strand, within GFF4963at 67.931 kb on - strand, within GFF4963

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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65,301 + GFF4961 0.32 -1.5
65,301 + GFF4961 0.32 -1.0
65,302 - GFF4961 0.32 +0.9
65,302 - GFF4961 0.32 -0.5
65,469 + GFF4961 0.43 -1.3
65,469 + GFF4961 0.43 -0.2
65,469 + GFF4961 0.43 +0.5
65,469 + GFF4961 0.43 -0.9
65,469 + GFF4961 0.43 -0.9
65,469 + GFF4961 0.43 -0.9
65,469 + GFF4961 0.43 +0.9
65,469 + GFF4961 0.43 -1.5
65,470 - GFF4961 0.43 +1.4
65,470 - GFF4961 0.43 -1.3
65,470 - GFF4961 0.43 -0.5
65,470 - GFF4961 0.43 +0.8
65,470 - GFF4961 0.43 +1.8
65,470 - GFF4961 0.43 +1.0
65,470 - GFF4961 0.43 -1.1
65,470 - GFF4961 0.43 +0.5
65,573 - GFF4961 0.50 -1.1
65,748 + GFF4961 0.62 +0.1
65,749 - GFF4961 0.62 -0.3
65,749 - GFF4961 0.62 -0.4
65,815 + GFF4961 0.67 -0.5
65,815 + GFF4961 0.67 -0.8
65,815 + GFF4961 0.67 -0.9
65,815 + GFF4961 0.67 -0.5
65,816 - GFF4961 0.67 -0.1
65,856 + GFF4961 0.70 -0.6
65,856 + GFF4961 0.70 +0.0
65,856 + GFF4961 0.70 +0.5
65,856 + GFF4961 0.70 -0.8
65,857 - GFF4961 0.70 -1.1
65,857 - GFF4961 0.70 -0.4
66,260 + -0.3
66,260 + +1.1
66,277 + +0.5
66,277 + -0.2
66,277 + -0.6
66,277 + +2.0
66,278 - -0.4
66,278 - -1.1
66,278 - -0.5
66,412 + GFF4962 0.15 +0.4
66,412 + GFF4962 0.15 +0.1
66,412 + GFF4962 0.15 -0.6
66,412 + GFF4962 0.15 -0.4
66,412 + GFF4962 0.15 -1.3
66,413 - GFF4962 0.15 -2.2
66,483 + GFF4962 0.23 -1.5
66,483 + GFF4962 0.23 -1.7
66,484 - GFF4962 0.23 -0.1
66,701 + GFF4962 0.50 -0.7
66,701 + GFF4962 0.50 +0.8
66,702 - GFF4962 0.50 -1.9
66,767 + GFF4962 0.58 -0.6
66,875 + GFF4962 0.71 -0.5
66,923 + GFF4962 0.76 -0.5
66,983 + GFF4962 0.84 -0.3
67,016 + GFF4962 0.88 -0.2
67,016 + GFF4962 0.88 -0.7
67,016 + GFF4962 0.88 -0.3
67,016 + GFF4962 0.88 -0.6
67,017 - GFF4962 0.88 +0.3
67,168 - +0.3
67,169 + -0.3
67,170 - +0.2
67,170 - +1.3
67,170 - +0.0
67,195 - +0.6
67,195 - +0.7
67,245 - -0.7
67,262 - -0.6
67,267 + +0.1
67,268 - +1.1
67,268 - +0.5
67,338 + -0.4
67,544 + GFF4963 0.16 -0.1
67,544 + GFF4963 0.16 -0.6
67,545 - GFF4963 0.16 +0.4
67,545 - GFF4963 0.16 +0.4
67,654 + GFF4963 0.23 +0.4
67,655 - GFF4963 0.23 +0.0
67,655 - GFF4963 0.23 -0.1
67,717 + GFF4963 0.27 +0.9
67,717 + GFF4963 0.27 +0.2
67,717 + GFF4963 0.27 -0.4
67,717 + GFF4963 0.27 -0.7
67,717 + GFF4963 0.27 -0.9
67,717 + GFF4963 0.27 -0.2
67,718 - GFF4963 0.27 +0.2
67,718 - GFF4963 0.27 -0.9
67,767 + GFF4963 0.30 -0.5
67,767 + GFF4963 0.30 +1.1
67,930 + GFF4963 0.39 -0.3
67,930 + GFF4963 0.39 +0.3
67,930 + GFF4963 0.39 +1.3
67,930 + GFF4963 0.39 +0.1
67,930 + GFF4963 0.39 +0.7
67,931 - GFF4963 0.39 -0.3

Or see this region's nucleotide sequence