Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4906 and GFF4907 are separated by 276 nucleotides GFF4907 and GFF4908 are separated by 137 nucleotides
GFF4906 - Methyl-accepting chemotaxis protein CtpH, at 188,294 to 189,916
GFF4906
GFF4907 - Zinc transport protein ZntB, at 190,193 to 191,215
GFF4907
GFF4908 - HTH-type transcriptional regulator PgrR, at 191,353 to 192,249
GFF4908
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 189.249 kb on + strand, within GFF4906 at 189.250 kb on - strand, within GFF4906 at 189.250 kb on - strand, within GFF4906 at 189.250 kb on - strand, within GFF4906 at 189.510 kb on + strand, within GFF4906 at 189.511 kb on - strand, within GFF4906 at 189.511 kb on - strand, within GFF4906 at 189.511 kb on - strand, within GFF4906 at 189.511 kb on - strand, within GFF4906 at 189.669 kb on + strand, within GFF4906 at 189.670 kb on - strand, within GFF4906 at 189.799 kb on + strand at 189.800 kb on - strand at 189.801 kb on + strand at 189.801 kb on + strand at 189.801 kb on + strand at 189.802 kb on - strand at 189.802 kb on - strand at 189.825 kb on + strand at 189.825 kb on + strand at 189.825 kb on + strand at 189.825 kb on + strand at 189.855 kb on - strand at 189.925 kb on - strand at 189.925 kb on - strand at 189.989 kb on + strand at 189.989 kb on + strand at 189.990 kb on - strand at 189.990 kb on - strand at 190.000 kb on + strand at 190.000 kb on + strand at 190.001 kb on - strand at 190.001 kb on - strand at 190.020 kb on + strand at 190.021 kb on - strand at 190.021 kb on - strand at 190.609 kb on + strand, within GFF4907 at 190.610 kb on - strand, within GFF4907 at 190.610 kb on - strand, within GFF4907 at 190.610 kb on - strand, within GFF4907 at 190.610 kb on - strand, within GFF4907 at 190.674 kb on + strand, within GFF4907 at 190.675 kb on - strand, within GFF4907 at 190.675 kb on - strand, within GFF4907 at 190.675 kb on - strand, within GFF4907 at 191.210 kb on + strand at 191.237 kb on + strand at 191.237 kb on + strand at 191.284 kb on + strand at 191.391 kb on + strand at 191.391 kb on + strand at 191.432 kb on + strand at 191.432 kb on + strand at 191.476 kb on + strand, within GFF4908 at 191.528 kb on - strand, within GFF4908 at 191.568 kb on - strand, within GFF4908 at 191.568 kb on - strand, within GFF4908 at 191.568 kb on - strand, within GFF4908 at 191.577 kb on + strand, within GFF4908 at 191.637 kb on - strand, within GFF4908 at 191.665 kb on + strand, within GFF4908 at 191.675 kb on + strand, within GFF4908 at 191.676 kb on - strand, within GFF4908 at 191.676 kb on - strand, within GFF4908 at 191.676 kb on - strand, within GFF4908 at 191.676 kb on - strand, within GFF4908 at 191.676 kb on - strand, within GFF4908 at 191.824 kb on + strand, within GFF4908 at 191.825 kb on - strand, within GFF4908 at 191.869 kb on - strand, within GFF4908 at 192.053 kb on + strand, within GFF4908
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 189,249 + GFF4906 0.59 +1.3 189,250 - GFF4906 0.59 +1.2 189,250 - GFF4906 0.59 -0.1 189,250 - GFF4906 0.59 -1.0 189,510 + GFF4906 0.75 -0.6 189,511 - GFF4906 0.75 +0.3 189,511 - GFF4906 0.75 -1.2 189,511 - GFF4906 0.75 -0.4 189,511 - GFF4906 0.75 +1.1 189,669 + GFF4906 0.85 -0.0 189,670 - GFF4906 0.85 -0.1 189,799 + -0.5 189,800 - -0.1 189,801 + -0.2 189,801 + -0.4 189,801 + +0.2 189,802 - -0.1 189,802 - +0.6 189,825 + +0.9 189,825 + -0.9 189,825 + +0.2 189,825 + -0.3 189,855 - -0.1 189,925 - +0.0 189,925 - -0.7 189,989 + +0.0 189,989 + +0.6 189,990 - +0.0 189,990 - -0.1 190,000 + +0.9 190,000 + -0.1 190,001 - -0.4 190,001 - +1.0 190,020 + +0.1 190,021 - -0.5 190,021 - -0.2 190,609 + GFF4907 0.41 +0.2 190,610 - GFF4907 0.41 +0.3 190,610 - GFF4907 0.41 -0.3 190,610 - GFF4907 0.41 -0.1 190,610 - GFF4907 0.41 +1.0 190,674 + GFF4907 0.47 +0.0 190,675 - GFF4907 0.47 +0.4 190,675 - GFF4907 0.47 +0.5 190,675 - GFF4907 0.47 +0.6 191,210 + -2.2 191,237 + +0.6 191,237 + -1.2 191,284 + +0.2 191,391 + -0.9 191,391 + -0.5 191,432 + -0.6 191,432 + -1.0 191,476 + GFF4908 0.14 +0.0 191,528 - GFF4908 0.20 +1.8 191,568 - GFF4908 0.24 -0.6 191,568 - GFF4908 0.24 -0.3 191,568 - GFF4908 0.24 -0.3 191,577 + GFF4908 0.25 +1.0 191,637 - GFF4908 0.32 +1.0 191,665 + GFF4908 0.35 -0.2 191,675 + GFF4908 0.36 -0.9 191,676 - GFF4908 0.36 +0.4 191,676 - GFF4908 0.36 -0.7 191,676 - GFF4908 0.36 -0.9 191,676 - GFF4908 0.36 +0.0 191,676 - GFF4908 0.36 +0.1 191,824 + GFF4908 0.53 +0.0 191,825 - GFF4908 0.53 -1.3 191,869 - GFF4908 0.58 +0.8 192,053 + GFF4908 0.78 -0.2
Or see this region's nucleotide sequence