Strain Fitness in Pseudomonas sp. DMC3 around GFF4902

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4901 and GFF4902 are separated by 99 nucleotidesGFF4902 and GFF4903 are separated by 148 nucleotidesGFF4903 and GFF4904 are separated by 220 nucleotides GFF4901 - Biofilm dispersion protein BdlA, at 183,618 to 184,937 GFF4901 GFF4902 - CTP synthase, at 185,037 to 185,741 GFF4902 GFF4903 - hypothetical protein, at 185,890 to 186,216 GFF4903 GFF4904 - Glycerophosphodiester phosphodiesterase, at 186,437 to 187,564 GFF4904 Position (kb) 185 186Strain fitness (log2 ratio) -2 -1 0 1at 184.106 kb on + strand, within GFF4901at 184.106 kb on + strand, within GFF4901at 184.146 kb on + strand, within GFF4901at 184.317 kb on + strand, within GFF4901at 184.317 kb on + strand, within GFF4901at 184.317 kb on + strand, within GFF4901at 184.317 kb on + strand, within GFF4901at 184.317 kb on + strand, within GFF4901at 184.318 kb on - strand, within GFF4901at 184.318 kb on - strand, within GFF4901at 184.318 kb on - strand, within GFF4901at 184.318 kb on - strand, within GFF4901at 184.318 kb on - strand, within GFF4901at 184.318 kb on - strand, within GFF4901at 184.350 kb on + strand, within GFF4901at 184.351 kb on - strand, within GFF4901at 184.351 kb on - strand, within GFF4901at 184.431 kb on + strand, within GFF4901at 184.472 kb on + strand, within GFF4901at 184.702 kb on + strand, within GFF4901at 184.703 kb on - strand, within GFF4901at 184.703 kb on - strand, within GFF4901at 184.703 kb on - strand, within GFF4901at 184.997 kb on + strandat 184.997 kb on + strandat 184.997 kb on + strandat 184.997 kb on + strandat 184.997 kb on + strandat 184.997 kb on + strandat 184.997 kb on + strandat 184.998 kb on - strandat 184.998 kb on - strandat 184.998 kb on - strandat 185.227 kb on + strand, within GFF4902at 185.243 kb on + strand, within GFF4902at 185.244 kb on - strand, within GFF4902at 185.244 kb on - strand, within GFF4902at 185.244 kb on - strand, within GFF4902at 185.244 kb on - strand, within GFF4902at 185.244 kb on - strand, within GFF4902at 185.264 kb on - strand, within GFF4902at 185.416 kb on + strand, within GFF4902at 185.578 kb on + strand, within GFF4902at 185.578 kb on + strand, within GFF4902at 185.579 kb on - strand, within GFF4902at 185.680 kb on + strandat 185.681 kb on - strandat 185.886 kb on + strandat 185.887 kb on - strandat 185.887 kb on - strandat 185.948 kb on + strand, within GFF4903at 185.949 kb on - strand, within GFF4903at 185.949 kb on - strand, within GFF4903at 185.973 kb on + strand, within GFF4903at 185.973 kb on + strand, within GFF4903at 185.974 kb on - strand, within GFF4903at 186.134 kb on + strand, within GFF4903at 186.134 kb on + strand, within GFF4903at 186.134 kb on + strand, within GFF4903at 186.134 kb on + strand, within GFF4903at 186.135 kb on - strand, within GFF4903at 186.135 kb on - strand, within GFF4903at 186.219 kb on + strandat 186.220 kb on - strandat 186.264 kb on - strandat 186.288 kb on + strandat 186.288 kb on + strandat 186.289 kb on - strandat 186.289 kb on - strandat 186.305 kb on + strandat 186.305 kb on + strandat 186.306 kb on - strandat 186.306 kb on - strandat 186.356 kb on - strandat 186.395 kb on - strandat 186.401 kb on + strandat 186.401 kb on + strandat 186.401 kb on + strandat 186.402 kb on - strandat 186.617 kb on + strand, within GFF4904at 186.617 kb on + strand, within GFF4904at 186.648 kb on - strand, within GFF4904

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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184,106 + GFF4901 0.37 +0.1
184,106 + GFF4901 0.37 -0.4
184,146 + GFF4901 0.40 -0.4
184,317 + GFF4901 0.53 -0.4
184,317 + GFF4901 0.53 -0.0
184,317 + GFF4901 0.53 -2.0
184,317 + GFF4901 0.53 -2.3
184,317 + GFF4901 0.53 +1.4
184,318 - GFF4901 0.53 -0.9
184,318 - GFF4901 0.53 -0.4
184,318 - GFF4901 0.53 -0.4
184,318 - GFF4901 0.53 -0.1
184,318 - GFF4901 0.53 -0.2
184,318 - GFF4901 0.53 -0.2
184,350 + GFF4901 0.55 -0.3
184,351 - GFF4901 0.56 +0.2
184,351 - GFF4901 0.56 +0.3
184,431 + GFF4901 0.62 +0.2
184,472 + GFF4901 0.65 +0.1
184,702 + GFF4901 0.82 -0.3
184,703 - GFF4901 0.82 +0.0
184,703 - GFF4901 0.82 +0.1
184,703 - GFF4901 0.82 -0.1
184,997 + -0.7
184,997 + +1.3
184,997 + -0.4
184,997 + +0.3
184,997 + +1.0
184,997 + -1.4
184,997 + -0.3
184,998 - -0.7
184,998 - +0.5
184,998 - -0.3
185,227 + GFF4902 0.27 +1.2
185,243 + GFF4902 0.29 -0.5
185,244 - GFF4902 0.29 +0.4
185,244 - GFF4902 0.29 +0.7
185,244 - GFF4902 0.29 +0.8
185,244 - GFF4902 0.29 +1.1
185,244 - GFF4902 0.29 +0.1
185,264 - GFF4902 0.32 +0.5
185,416 + GFF4902 0.54 +0.3
185,578 + GFF4902 0.77 +0.6
185,578 + GFF4902 0.77 +0.2
185,579 - GFF4902 0.77 +0.5
185,680 + -0.9
185,681 - +0.2
185,886 + +0.3
185,887 - -1.0
185,887 - -0.8
185,948 + GFF4903 0.18 +0.7
185,949 - GFF4903 0.18 +0.5
185,949 - GFF4903 0.18 -0.1
185,973 + GFF4903 0.25 +0.4
185,973 + GFF4903 0.25 +0.3
185,974 - GFF4903 0.26 +0.0
186,134 + GFF4903 0.75 +0.1
186,134 + GFF4903 0.75 +0.1
186,134 + GFF4903 0.75 -0.2
186,134 + GFF4903 0.75 -0.9
186,135 - GFF4903 0.75 -0.4
186,135 - GFF4903 0.75 -1.4
186,219 + +0.4
186,220 - +0.4
186,264 - +0.1
186,288 + +0.6
186,288 + -0.1
186,289 - -1.7
186,289 - +1.1
186,305 + -0.6
186,305 + -0.1
186,306 - -0.0
186,306 - -0.4
186,356 - +0.2
186,395 - -0.7
186,401 + -1.9
186,401 + +0.2
186,401 + +0.2
186,402 - +0.4
186,617 + GFF4904 0.16 +0.2
186,617 + GFF4904 0.16 +0.0
186,648 - GFF4904 0.19 -0.1

Or see this region's nucleotide sequence