Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4880 and GFF4881 are separated by 13 nucleotides GFF4881 and GFF4882 are separated by 250 nucleotides
GFF4880 - hypothetical protein, at 153,637 to 161,400
GFF4880
GFF4881 - HTH-type transcriptional regulator CdhR, at 161,414 to 162,394
GFF4881
GFF4882 - Histidine transport ATP-binding protein HisP, at 162,645 to 163,409
GFF4882
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1 at 160.498 kb on + strand, within GFF4880 at 160.498 kb on + strand, within GFF4880 at 160.584 kb on + strand, within GFF4880 at 160.584 kb on + strand, within GFF4880 at 160.585 kb on - strand, within GFF4880 at 160.737 kb on + strand at 160.737 kb on + strand at 160.738 kb on - strand at 160.794 kb on + strand at 160.795 kb on - strand at 160.895 kb on - strand at 160.895 kb on - strand at 160.951 kb on + strand at 160.952 kb on - strand at 161.158 kb on + strand at 161.158 kb on + strand at 161.159 kb on - strand at 161.159 kb on - strand at 161.159 kb on - strand at 161.236 kb on + strand at 161.237 kb on - strand at 161.237 kb on - strand at 161.237 kb on - strand at 161.291 kb on - strand at 161.302 kb on + strand at 161.302 kb on + strand at 161.302 kb on + strand at 161.348 kb on - strand at 161.512 kb on - strand, within GFF4881 at 161.625 kb on + strand, within GFF4881 at 161.625 kb on + strand, within GFF4881 at 161.625 kb on + strand, within GFF4881 at 161.626 kb on - strand, within GFF4881 at 161.626 kb on - strand, within GFF4881 at 161.626 kb on - strand, within GFF4881 at 161.629 kb on - strand, within GFF4881 at 161.652 kb on + strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.688 kb on - strand, within GFF4881 at 162.075 kb on + strand, within GFF4881 at 162.352 kb on + strand at 162.353 kb on - strand at 162.444 kb on + strand at 162.521 kb on - strand at 162.532 kb on + strand at 162.532 kb on + strand at 162.532 kb on + strand at 162.533 kb on - strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 163.013 kb on - strand, within GFF4882 at 163.013 kb on - strand, within GFF4882 at 163.015 kb on + strand, within GFF4882 at 163.039 kb on + strand, within GFF4882 at 163.039 kb on + strand, within GFF4882 at 163.040 kb on - strand, within GFF4882 at 163.280 kb on + strand, within GFF4882 at 163.281 kb on - strand, within GFF4882 at 163.281 kb on - strand, within GFF4882 at 163.372 kb on + strand at 163.379 kb on + strand at 163.379 kb on + strand at 163.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 160,498 + GFF4880 0.88 -0.4 160,498 + GFF4880 0.88 +0.7 160,584 + GFF4880 0.89 -0.6 160,584 + GFF4880 0.89 +0.0 160,585 - GFF4880 0.89 +0.1 160,737 + -0.2 160,737 + -0.4 160,738 - -1.0 160,794 + -1.1 160,795 - -0.4 160,895 - -0.9 160,895 - +0.6 160,951 + +1.3 160,952 - +1.4 161,158 + +0.5 161,158 + +0.4 161,159 - +1.0 161,159 - +1.0 161,159 - +0.2 161,236 + -0.1 161,237 - +0.3 161,237 - -0.6 161,237 - +0.1 161,291 - +0.7 161,302 + -0.2 161,302 + -1.8 161,302 + +0.9 161,348 - +0.7 161,512 - GFF4881 0.10 +1.0 161,625 + GFF4881 0.22 +0.8 161,625 + GFF4881 0.22 +0.7 161,625 + GFF4881 0.22 +0.8 161,626 - GFF4881 0.22 +0.6 161,626 - GFF4881 0.22 +0.8 161,626 - GFF4881 0.22 -1.0 161,629 - GFF4881 0.22 +0.6 161,652 + GFF4881 0.24 +0.2 161,653 - GFF4881 0.24 -0.2 161,653 - GFF4881 0.24 +1.2 161,653 - GFF4881 0.24 +0.2 161,653 - GFF4881 0.24 +0.3 161,653 - GFF4881 0.24 +0.7 161,688 - GFF4881 0.28 -0.7 162,075 + GFF4881 0.67 +1.5 162,352 + +0.4 162,353 - +0.7 162,444 + +0.3 162,521 - -0.8 162,532 + +1.2 162,532 + +1.4 162,532 + +0.6 162,533 - +0.2 162,617 + +0.1 162,617 + -0.1 162,617 + +0.5 162,617 + -0.7 162,617 + -0.8 162,618 - -0.6 162,618 - -1.3 162,618 - -0.3 162,618 - -0.3 162,618 - -0.8 162,618 - -0.5 163,013 - GFF4882 0.48 -0.3 163,013 - GFF4882 0.48 +0.3 163,015 + GFF4882 0.48 -0.3 163,039 + GFF4882 0.52 +0.3 163,039 + GFF4882 0.52 +1.3 163,040 - GFF4882 0.52 +0.2 163,280 + GFF4882 0.83 -0.9 163,281 - GFF4882 0.83 +0.2 163,281 - GFF4882 0.83 +0.5 163,372 + -0.7 163,379 + +0.2 163,379 + +1.5 163,379 + +0.8
Or see this region's nucleotide sequence