Strain Fitness in Pseudomonas sp. DMC3 around GFF4872

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4871 and GFF4872 are separated by 551 nucleotidesGFF4872 and GFF4873 are separated by 126 nucleotides GFF4871 - Low specificity L-threonine aldolase, at 143,234 to 144,238 GFF4871 GFF4872 - 6,7-dimethyl-8-ribityllumazine synthase, at 144,790 to 145,299 GFF4872 GFF4873 - Succinylglutamate desuccinylase, at 145,426 to 146,433 GFF4873 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 143.791 kb on - strand, within GFF4871at 143.810 kb on - strand, within GFF4871at 143.973 kb on + strand, within GFF4871at 143.973 kb on + strand, within GFF4871at 143.973 kb on + strand, within GFF4871at 143.973 kb on + strand, within GFF4871at 143.974 kb on - strand, within GFF4871at 143.974 kb on - strand, within GFF4871at 143.974 kb on - strand, within GFF4871at 143.974 kb on - strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.977 kb on + strand, within GFF4871at 143.978 kb on - strand, within GFF4871at 143.978 kb on - strand, within GFF4871at 143.978 kb on - strand, within GFF4871at 143.978 kb on - strand, within GFF4871at 143.978 kb on - strand, within GFF4871at 143.978 kb on - strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.979 kb on + strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 143.980 kb on - strand, within GFF4871at 144.006 kb on + strand, within GFF4871at 144.006 kb on + strand, within GFF4871at 144.006 kb on + strand, within GFF4871at 144.006 kb on + strand, within GFF4871at 144.006 kb on + strand, within GFF4871at 144.006 kb on + strand, within GFF4871at 144.007 kb on - strand, within GFF4871at 144.007 kb on - strand, within GFF4871at 144.007 kb on - strand, within GFF4871at 144.007 kb on - strand, within GFF4871at 144.144 kb on + strandat 144.287 kb on - strandat 144.307 kb on + strandat 144.307 kb on + strandat 144.308 kb on - strandat 144.393 kb on + strandat 144.393 kb on + strandat 144.393 kb on + strandat 144.394 kb on - strandat 144.394 kb on - strandat 144.394 kb on - strandat 144.405 kb on + strandat 144.405 kb on + strandat 144.405 kb on + strandat 144.405 kb on + strandat 144.406 kb on - strandat 144.406 kb on - strandat 144.553 kb on + strandat 144.570 kb on + strandat 144.570 kb on + strandat 144.570 kb on + strandat 144.571 kb on - strandat 144.571 kb on - strandat 144.572 kb on + strandat 144.662 kb on + strandat 144.662 kb on + strandat 144.663 kb on - strandat 144.663 kb on - strandat 144.754 kb on + strandat 144.755 kb on - strandat 145.057 kb on + strand, within GFF4872at 145.058 kb on - strand, within GFF4872at 145.058 kb on - strand, within GFF4872at 145.289 kb on + strandat 145.305 kb on - strandat 145.305 kb on - strandat 145.305 kb on - strandat 145.305 kb on - strandat 145.305 kb on - strandat 145.568 kb on + strand, within GFF4873at 145.568 kb on + strand, within GFF4873at 145.568 kb on + strand, within GFF4873at 145.569 kb on - strand, within GFF4873at 145.823 kb on + strand, within GFF4873at 145.823 kb on + strand, within GFF4873at 145.824 kb on - strand, within GFF4873at 145.830 kb on - strand, within GFF4873at 145.991 kb on + strand, within GFF4873at 145.992 kb on - strand, within GFF4873

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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143,791 - GFF4871 0.55 -0.7
143,810 - GFF4871 0.57 -0.4
143,973 + GFF4871 0.74 +0.4
143,973 + GFF4871 0.74 -0.4
143,973 + GFF4871 0.74 -0.3
143,973 + GFF4871 0.74 +0.3
143,974 - GFF4871 0.74 -0.6
143,974 - GFF4871 0.74 -1.7
143,974 - GFF4871 0.74 +0.0
143,974 - GFF4871 0.74 -0.6
143,977 + GFF4871 0.74 -0.6
143,977 + GFF4871 0.74 +0.0
143,977 + GFF4871 0.74 -0.1
143,977 + GFF4871 0.74 -0.4
143,977 + GFF4871 0.74 -0.6
143,977 + GFF4871 0.74 -0.8
143,977 + GFF4871 0.74 +0.2
143,977 + GFF4871 0.74 -1.7
143,977 + GFF4871 0.74 -1.4
143,977 + GFF4871 0.74 -0.1
143,977 + GFF4871 0.74 -0.8
143,977 + GFF4871 0.74 -0.0
143,978 - GFF4871 0.74 -0.2
143,978 - GFF4871 0.74 +0.2
143,978 - GFF4871 0.74 -0.1
143,978 - GFF4871 0.74 +0.6
143,978 - GFF4871 0.74 +0.9
143,978 - GFF4871 0.74 -0.4
143,979 + GFF4871 0.74 -0.3
143,979 + GFF4871 0.74 +0.7
143,979 + GFF4871 0.74 -0.1
143,979 + GFF4871 0.74 -0.4
143,979 + GFF4871 0.74 -2.0
143,979 + GFF4871 0.74 +0.6
143,979 + GFF4871 0.74 +0.7
143,979 + GFF4871 0.74 -0.6
143,979 + GFF4871 0.74 -1.1
143,979 + GFF4871 0.74 +0.2
143,979 + GFF4871 0.74 +0.0
143,979 + GFF4871 0.74 -0.3
143,979 + GFF4871 0.74 -0.4
143,980 - GFF4871 0.74 +0.2
143,980 - GFF4871 0.74 +0.8
143,980 - GFF4871 0.74 -1.3
143,980 - GFF4871 0.74 +0.8
143,980 - GFF4871 0.74 +1.3
143,980 - GFF4871 0.74 +1.2
143,980 - GFF4871 0.74 -0.6
144,006 + GFF4871 0.77 -0.5
144,006 + GFF4871 0.77 -0.1
144,006 + GFF4871 0.77 +0.1
144,006 + GFF4871 0.77 -0.3
144,006 + GFF4871 0.77 +0.1
144,006 + GFF4871 0.77 +0.6
144,007 - GFF4871 0.77 -0.3
144,007 - GFF4871 0.77 -1.0
144,007 - GFF4871 0.77 -0.0
144,007 - GFF4871 0.77 -0.0
144,144 + +2.4
144,287 - +0.4
144,307 + -0.1
144,307 + -0.6
144,308 - +0.2
144,393 + +0.3
144,393 + -1.7
144,393 + -0.2
144,394 - -0.9
144,394 - +0.4
144,394 - -0.2
144,405 + +0.3
144,405 + +1.4
144,405 + -0.4
144,405 + +1.4
144,406 - -1.6
144,406 - -0.4
144,553 + -0.7
144,570 + -0.3
144,570 + -0.2
144,570 + +0.2
144,571 - +0.3
144,571 - +0.1
144,572 + -0.9
144,662 + -0.5
144,662 + +0.2
144,663 - +1.2
144,663 - -0.8
144,754 + +0.9
144,755 - -0.6
145,057 + GFF4872 0.52 +0.4
145,058 - GFF4872 0.53 +1.0
145,058 - GFF4872 0.53 -0.9
145,289 + +0.5
145,305 - -1.0
145,305 - +0.7
145,305 - -0.4
145,305 - +1.0
145,305 - -0.6
145,568 + GFF4873 0.14 +0.6
145,568 + GFF4873 0.14 -0.3
145,568 + GFF4873 0.14 +0.3
145,569 - GFF4873 0.14 -0.9
145,823 + GFF4873 0.39 +0.1
145,823 + GFF4873 0.39 -0.8
145,824 - GFF4873 0.39 -0.9
145,830 - GFF4873 0.40 -0.3
145,991 + GFF4873 0.56 -2.4
145,992 - GFF4873 0.56 +0.3

Or see this region's nucleotide sequence