Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF485 and GFF486 are separated by 10 nucleotides GFF486 and GFF487 are separated by 298 nucleotides GFF487 and GFF488 are separated by 180 nucleotides
GFF485 - N5-carboxyaminoimidazole ribonucleotide synthase, at 533,741 to 534,823
GFF485
GFF486 - N5-carboxyaminoimidazole ribonucleotide mutase, at 534,834 to 535,325
GFF486
GFF487 - HTH-type transcriptional regulator YjiE, at 535,624 to 536,532
GFF487
GFF488 - Aspartate ammonia-lyase, at 536,713 to 538,137
GFF488
Position (kb) 535
536
537 Strain fitness (log2 ratio) -2
-1
0
1 at 534.842 kb on + strand at 534.842 kb on + strand at 534.842 kb on + strand at 534.843 kb on - strand at 534.843 kb on - strand at 534.843 kb on - strand at 535.256 kb on + strand, within GFF486 at 535.367 kb on - strand at 535.367 kb on - strand at 535.367 kb on - strand at 535.444 kb on - strand at 535.444 kb on - strand at 535.444 kb on - strand at 535.446 kb on - strand at 535.462 kb on + strand at 535.463 kb on - strand at 535.575 kb on + strand at 535.575 kb on + strand at 535.583 kb on + strand at 535.583 kb on + strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.598 kb on - strand at 535.598 kb on - strand at 535.598 kb on - strand at 535.859 kb on + strand, within GFF487 at 535.860 kb on - strand, within GFF487 at 535.860 kb on - strand, within GFF487 at 535.935 kb on - strand, within GFF487 at 536.084 kb on + strand, within GFF487 at 536.084 kb on + strand, within GFF487 at 536.084 kb on + strand, within GFF487 at 536.085 kb on - strand, within GFF487 at 536.384 kb on - strand, within GFF487 at 536.384 kb on - strand, within GFF487 at 536.600 kb on + strand at 536.615 kb on + strand at 536.659 kb on + strand at 536.660 kb on - strand at 536.710 kb on - strand at 536.783 kb on - strand at 536.783 kb on - strand at 536.783 kb on - strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.786 kb on - strand at 536.786 kb on - strand at 537.101 kb on - strand, within GFF488 at 537.106 kb on + strand, within GFF488 at 537.107 kb on - strand, within GFF488 at 537.504 kb on - strand, within GFF488
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 534,842 + -1.9 534,842 + -1.4 534,842 + -0.7 534,843 - -0.3 534,843 - -0.5 534,843 - +0.8 535,256 + GFF486 0.86 -0.7 535,367 - -0.3 535,367 - -0.6 535,367 - +0.2 535,444 - -0.9 535,444 - +0.4 535,444 - -0.3 535,446 - -1.2 535,462 + +0.1 535,463 - +0.0 535,575 + -0.8 535,575 + +0.9 535,583 + +0.7 535,583 + +0.8 535,597 + -1.2 535,597 + -0.3 535,597 + +0.2 535,597 + +0.1 535,597 + +0.2 535,597 + +0.3 535,598 - +1.3 535,598 - +1.5 535,598 - +1.3 535,859 + GFF487 0.26 -0.0 535,860 - GFF487 0.26 +0.6 535,860 - GFF487 0.26 -0.3 535,935 - GFF487 0.34 +0.0 536,084 + GFF487 0.51 +0.9 536,084 + GFF487 0.51 +0.2 536,084 + GFF487 0.51 +0.7 536,085 - GFF487 0.51 +0.7 536,384 - GFF487 0.84 +0.5 536,384 - GFF487 0.84 -0.1 536,600 + +0.0 536,615 + +0.1 536,659 + +0.3 536,660 - -1.2 536,710 - +0.6 536,783 - +0.6 536,783 - -0.1 536,783 - -0.3 536,785 + -0.4 536,785 + -1.4 536,785 + +0.1 536,785 + +0.5 536,785 + +0.7 536,785 + -0.1 536,785 + -0.3 536,786 - -0.9 536,786 - +0.0 537,101 - GFF488 0.27 -0.6 537,106 + GFF488 0.28 +0.3 537,107 - GFF488 0.28 +0.3 537,504 - GFF488 0.56 +0.6
Or see this region's nucleotide sequence