Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4853 and GFF4854 are separated by 162 nucleotides GFF4854 and GFF4855 are separated by 48 nucleotides GFF4855 and GFF4856 are separated by 92 nucleotides GFF4856 and GFF4857 are separated by 73 nucleotides
GFF4853 - hypothetical protein, at 121,096 to 121,728
GFF4853
GFF4854 - hypothetical protein, at 121,891 to 122,217
GFF4854
GFF4855 - hypothetical protein, at 122,266 to 122,733
GFF4855
GFF4856 - Flagellar brake protein YcgR, at 122,826 to 123,572
GFF4856
GFF4857 - putative MFS-type transporter YcaD, at 123,646 to 125,040
GFF4857
Position (kb) 122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.602 kb on - strand, within GFF4853 at 121.665 kb on + strand at 121.665 kb on + strand at 121.726 kb on + strand at 121.726 kb on + strand at 121.726 kb on + strand at 121.726 kb on + strand at 121.727 kb on - strand at 121.727 kb on - strand at 121.727 kb on - strand at 121.727 kb on - strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.812 kb on + strand at 121.813 kb on - strand at 121.813 kb on - strand at 121.813 kb on - strand at 121.813 kb on - strand at 121.813 kb on - strand at 121.813 kb on - strand at 121.813 kb on - strand at 122.216 kb on - strand at 122.277 kb on + strand at 122.277 kb on + strand at 122.278 kb on - strand at 122.278 kb on - strand at 122.278 kb on - strand at 122.278 kb on - strand at 122.278 kb on - strand at 122.278 kb on - strand at 122.282 kb on + strand at 122.283 kb on - strand at 122.283 kb on - strand at 122.283 kb on - strand at 122.283 kb on - strand at 122.283 kb on - strand at 122.283 kb on - strand at 122.283 kb on - strand at 122.333 kb on + strand, within GFF4855 at 122.334 kb on - strand, within GFF4855 at 122.674 kb on + strand, within GFF4855 at 122.674 kb on + strand, within GFF4855 at 122.675 kb on - strand, within GFF4855 at 122.675 kb on - strand, within GFF4855 at 122.754 kb on + strand at 122.801 kb on + strand at 122.801 kb on + strand at 122.801 kb on + strand at 122.801 kb on + strand at 122.801 kb on + strand at 122.802 kb on - strand at 122.802 kb on - strand at 122.802 kb on - strand at 122.802 kb on - strand at 122.817 kb on + strand at 122.839 kb on + strand at 122.840 kb on - strand at 122.977 kb on - strand, within GFF4856 at 123.097 kb on + strand, within GFF4856 at 123.159 kb on + strand, within GFF4856 at 123.189 kb on + strand, within GFF4856 at 123.189 kb on + strand, within GFF4856 at 123.230 kb on + strand, within GFF4856 at 123.230 kb on + strand, within GFF4856 at 123.300 kb on - strand, within GFF4856 at 123.369 kb on + strand, within GFF4856 at 123.370 kb on - strand, within GFF4856 at 123.430 kb on - strand, within GFF4856 at 123.637 kb on - strand at 123.637 kb on - strand at 123.637 kb on - strand at 123.637 kb on - strand at 123.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 121,602 - GFF4853 0.80 +0.8 121,665 + +0.8 121,665 + -0.7 121,726 + -0.1 121,726 + -0.0 121,726 + -0.2 121,726 + -1.2 121,727 - +1.1 121,727 - +0.1 121,727 - -0.7 121,727 - +0.1 121,812 + +1.1 121,812 + +0.5 121,812 + +0.4 121,812 + +0.7 121,812 + -0.3 121,812 + -1.0 121,812 + -0.3 121,812 + +0.0 121,812 + -0.4 121,813 - -0.9 121,813 - +0.5 121,813 - +1.6 121,813 - -1.3 121,813 - -0.9 121,813 - -0.8 121,813 - -0.6 122,216 - -0.1 122,277 + +0.9 122,277 + +0.5 122,278 - +0.8 122,278 - -0.2 122,278 - +0.2 122,278 - +0.4 122,278 - +0.1 122,278 - +1.6 122,282 + +0.5 122,283 - +1.8 122,283 - -0.8 122,283 - -0.9 122,283 - +0.3 122,283 - +1.0 122,283 - -1.2 122,283 - -0.3 122,333 + GFF4855 0.14 +1.0 122,334 - GFF4855 0.15 +0.8 122,674 + GFF4855 0.87 +0.0 122,674 + GFF4855 0.87 +1.7 122,675 - GFF4855 0.87 +0.1 122,675 - GFF4855 0.87 -0.3 122,754 + -0.2 122,801 + -0.1 122,801 + +0.3 122,801 + +0.5 122,801 + +0.2 122,801 + -0.4 122,802 - +0.8 122,802 - -0.4 122,802 - +0.9 122,802 - +0.4 122,817 + +0.3 122,839 + -0.2 122,840 - +0.5 122,977 - GFF4856 0.20 +0.3 123,097 + GFF4856 0.36 -1.4 123,159 + GFF4856 0.45 -0.6 123,189 + GFF4856 0.49 -1.3 123,189 + GFF4856 0.49 -0.2 123,230 + GFF4856 0.54 -0.4 123,230 + GFF4856 0.54 -2.3 123,300 - GFF4856 0.63 +0.1 123,369 + GFF4856 0.73 +0.2 123,370 - GFF4856 0.73 +0.6 123,430 - GFF4856 0.81 +0.4 123,637 - -1.0 123,637 - -0.1 123,637 - -1.2 123,637 - +0.4 123,681 + +0.4
Or see this region's nucleotide sequence