Strain Fitness in Pseudomonas sp. DMC3 around GFF4850

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4848 and GFF4849 are separated by 15 nucleotidesGFF4849 and GFF4850 are separated by 3 nucleotidesGFF4850 and GFF4851 are separated by 370 nucleotides GFF4848 - Basal-body rod modification protein FlgD, at 117,106 to 117,834 GFF4848 GFF4849 - Flagellar basal-body rod protein FlgC, at 117,850 to 118,293 GFF4849 GFF4850 - Flagellar basal body rod protein FlgB, at 118,297 to 118,707 GFF4850 GFF4851 - Chemotaxis protein methyltransferase Cher2, at 119,078 to 119,905 GFF4851 Position (kb) 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 117.542 kb on + strand, within GFF4848at 117.542 kb on + strand, within GFF4848at 117.542 kb on + strand, within GFF4848at 117.542 kb on + strand, within GFF4848at 117.542 kb on + strand, within GFF4848at 117.543 kb on - strand, within GFF4848at 117.543 kb on - strand, within GFF4848at 117.543 kb on - strand, within GFF4848at 117.579 kb on + strand, within GFF4848at 117.579 kb on + strand, within GFF4848at 117.580 kb on - strand, within GFF4848at 117.580 kb on - strand, within GFF4848at 117.756 kb on + strand, within GFF4848at 117.757 kb on - strand, within GFF4848at 117.757 kb on - strand, within GFF4848at 117.757 kb on - strand, within GFF4848at 117.848 kb on + strandat 117.851 kb on + strandat 117.851 kb on + strandat 117.852 kb on - strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.869 kb on - strandat 117.980 kb on + strand, within GFF4849at 117.981 kb on - strand, within GFF4849at 117.981 kb on - strand, within GFF4849at 117.986 kb on + strand, within GFF4849at 117.986 kb on + strand, within GFF4849at 117.986 kb on + strand, within GFF4849at 117.987 kb on - strand, within GFF4849at 117.987 kb on - strand, within GFF4849at 117.987 kb on - strand, within GFF4849at 118.170 kb on - strand, within GFF4849at 118.298 kb on + strandat 118.299 kb on - strandat 118.385 kb on + strand, within GFF4850at 118.451 kb on + strand, within GFF4850at 118.451 kb on + strand, within GFF4850at 118.451 kb on + strand, within GFF4850at 118.451 kb on + strand, within GFF4850at 118.452 kb on - strand, within GFF4850at 118.595 kb on + strand, within GFF4850at 118.595 kb on + strand, within GFF4850at 118.595 kb on + strand, within GFF4850at 118.596 kb on - strand, within GFF4850at 118.596 kb on - strand, within GFF4850at 118.596 kb on - strand, within GFF4850at 118.596 kb on - strand, within GFF4850at 118.950 kb on - strandat 119.014 kb on - strandat 119.014 kb on - strandat 119.014 kb on - strandat 119.025 kb on - strandat 119.091 kb on + strandat 119.091 kb on + strandat 119.091 kb on + strandat 119.091 kb on + strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.092 kb on - strandat 119.124 kb on + strandat 119.173 kb on - strand, within GFF4851at 119.238 kb on + strand, within GFF4851at 119.238 kb on + strand, within GFF4851at 119.238 kb on + strand, within GFF4851at 119.238 kb on + strand, within GFF4851at 119.239 kb on - strand, within GFF4851at 119.239 kb on - strand, within GFF4851at 119.239 kb on - strand, within GFF4851at 119.239 kb on - strand, within GFF4851at 119.289 kb on + strand, within GFF4851at 119.289 kb on + strand, within GFF4851at 119.289 kb on + strand, within GFF4851at 119.289 kb on + strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.290 kb on - strand, within GFF4851at 119.368 kb on + strand, within GFF4851at 119.379 kb on + strand, within GFF4851at 119.380 kb on - strand, within GFF4851at 119.553 kb on + strand, within GFF4851at 119.554 kb on - strand, within GFF4851at 119.554 kb on - strand, within GFF4851at 119.554 kb on - strand, within GFF4851at 119.633 kb on + strand, within GFF4851at 119.633 kb on + strand, within GFF4851at 119.634 kb on - strand, within GFF4851at 119.634 kb on - strand, within GFF4851at 119.634 kb on - strand, within GFF4851at 119.662 kb on - strand, within GFF4851at 119.662 kb on - strand, within GFF4851at 119.662 kb on - strand, within GFF4851at 119.689 kb on + strand, within GFF4851

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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117,542 + GFF4848 0.60 +0.4
117,542 + GFF4848 0.60 -0.9
117,542 + GFF4848 0.60 +0.7
117,542 + GFF4848 0.60 +0.6
117,542 + GFF4848 0.60 +0.9
117,543 - GFF4848 0.60 +0.5
117,543 - GFF4848 0.60 +0.3
117,543 - GFF4848 0.60 +0.8
117,579 + GFF4848 0.65 -0.2
117,579 + GFF4848 0.65 +0.1
117,580 - GFF4848 0.65 +0.1
117,580 - GFF4848 0.65 -0.7
117,756 + GFF4848 0.89 +0.2
117,757 - GFF4848 0.89 +0.4
117,757 - GFF4848 0.89 +0.2
117,757 - GFF4848 0.89 +0.5
117,848 + +0.4
117,851 + +1.6
117,851 + +0.2
117,852 - +0.3
117,868 + +0.8
117,868 + +0.1
117,868 + +0.3
117,869 - +1.1
117,980 + GFF4849 0.29 +1.2
117,981 - GFF4849 0.30 +1.4
117,981 - GFF4849 0.30 +0.3
117,986 + GFF4849 0.31 +1.0
117,986 + GFF4849 0.31 +1.6
117,986 + GFF4849 0.31 +0.5
117,987 - GFF4849 0.31 +1.2
117,987 - GFF4849 0.31 +0.2
117,987 - GFF4849 0.31 +1.5
118,170 - GFF4849 0.72 -1.3
118,298 + +1.5
118,299 - +0.2
118,385 + GFF4850 0.21 -0.2
118,451 + GFF4850 0.37 +0.1
118,451 + GFF4850 0.37 +1.3
118,451 + GFF4850 0.37 +0.2
118,451 + GFF4850 0.37 -0.1
118,452 - GFF4850 0.38 +1.4
118,595 + GFF4850 0.73 +0.2
118,595 + GFF4850 0.73 +0.7
118,595 + GFF4850 0.73 -0.2
118,596 - GFF4850 0.73 +0.9
118,596 - GFF4850 0.73 +0.6
118,596 - GFF4850 0.73 -1.1
118,596 - GFF4850 0.73 +0.5
118,950 - -0.4
119,014 - -0.7
119,014 - -1.7
119,014 - +0.8
119,025 - +1.0
119,091 + -0.2
119,091 + -1.3
119,091 + -0.1
119,091 + +0.7
119,092 - +0.1
119,092 - +0.1
119,092 - +1.0
119,092 - -0.9
119,092 - -2.1
119,092 - -1.6
119,092 - -0.2
119,092 - +0.7
119,124 + -0.2
119,173 - GFF4851 0.11 +0.1
119,238 + GFF4851 0.19 -1.7
119,238 + GFF4851 0.19 +0.6
119,238 + GFF4851 0.19 -1.0
119,238 + GFF4851 0.19 -0.1
119,239 - GFF4851 0.19 -0.8
119,239 - GFF4851 0.19 -0.1
119,239 - GFF4851 0.19 -0.2
119,239 - GFF4851 0.19 -0.6
119,289 + GFF4851 0.25 -0.9
119,289 + GFF4851 0.25 +0.3
119,289 + GFF4851 0.25 +0.2
119,289 + GFF4851 0.25 +0.1
119,290 - GFF4851 0.26 +1.0
119,290 - GFF4851 0.26 -0.4
119,290 - GFF4851 0.26 +0.6
119,290 - GFF4851 0.26 +0.7
119,290 - GFF4851 0.26 +0.3
119,290 - GFF4851 0.26 -0.2
119,290 - GFF4851 0.26 -1.1
119,368 + GFF4851 0.35 +1.1
119,379 + GFF4851 0.36 -0.2
119,380 - GFF4851 0.36 -0.8
119,553 + GFF4851 0.57 -0.8
119,554 - GFF4851 0.57 +0.3
119,554 - GFF4851 0.57 +1.0
119,554 - GFF4851 0.57 -0.8
119,633 + GFF4851 0.67 -0.2
119,633 + GFF4851 0.67 -0.7
119,634 - GFF4851 0.67 -0.7
119,634 - GFF4851 0.67 -1.2
119,634 - GFF4851 0.67 +1.8
119,662 - GFF4851 0.71 -0.3
119,662 - GFF4851 0.71 +1.2
119,662 - GFF4851 0.71 +0.1
119,689 + GFF4851 0.74 -1.1

Or see this region's nucleotide sequence