Strain Fitness in Pseudomonas sp. DMC3 around GFF4848

Experiment: D-Glucose and D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and D,L-Lactate (C)
116,120	+		GFF4847	0.28	+0.8
116,149	+		GFF4847	0.30	+0.8
116,149	+		GFF4847	0.30	+0.9
116,149	+		GFF4847	0.30	+0.7
116,149	+		GFF4847	0.30	+1.2
116,150	-		GFF4847	0.30	+0.2
116,150	-		GFF4847	0.30	+0.0
116,416	+		GFF4847	0.50	+0.5
116,416	+		GFF4847	0.50	+0.6
116,416	+		GFF4847	0.50	+1.4
116,417	-		GFF4847	0.50	+0.9
116,417	-		GFF4847	0.50	-0.3
116,417	-		GFF4847	0.50	-0.0
116,417	-		GFF4847	0.50	+0.5
116,417	-		GFF4847	0.50	+0.6
116,417	-		GFF4847	0.50	-0.1
116,452	+		GFF4847	0.53	+1.5
116,452	+		GFF4847	0.53	+0.8
116,452	+		GFF4847	0.53	-0.6
116,452	+		GFF4847	0.53	-0.0
116,452	+		GFF4847	0.53	+0.4
116,452	+		GFF4847	0.53	+1.1
116,452	+		GFF4847	0.53	+1.0
116,452	+		GFF4847	0.53	+1.0
116,452	+		GFF4847	0.53	+0.2
116,452	+		GFF4847	0.53	+0.8
116,453	-		GFF4847	0.53	+0.4
116,453	-		GFF4847	0.53	-0.8
116,453	-		GFF4847	0.53	+0.3
116,453	-		GFF4847	0.53	+0.5
116,453	-		GFF4847	0.53	+0.8
116,453	-		GFF4847	0.53	+0.8
116,453	-		GFF4847	0.53	+0.5
116,453	-		GFF4847	0.53	+0.6
116,453	-		GFF4847	0.53	+0.4
116,453	-		GFF4847	0.53	+0.3
116,488	+		GFF4847	0.56	+0.3
116,488	+		GFF4847	0.56	+0.6
116,488	+		GFF4847	0.56	+1.3
116,488	+		GFF4847	0.56	+1.0
116,488	+		GFF4847	0.56	+1.5
116,488	+		GFF4847	0.56	+0.9
116,489	-		GFF4847	0.56	+1.1
116,489	-		GFF4847	0.56	+0.7
116,515	+		GFF4847	0.58	+0.1
116,531	+		GFF4847	0.59	+0.6
116,531	+		GFF4847	0.59	+1.2
116,532	-		GFF4847	0.59	+1.1
116,532	-		GFF4847	0.59	+2.0
116,558	+		GFF4847	0.61	+0.4
116,639	+		GFF4847	0.67	+0.4
116,672	+		GFF4847	0.70	+0.2
116,672	+		GFF4847	0.70	+0.1
116,672	+		GFF4847	0.70	+0.4
116,673	-		GFF4847	0.70	+1.0
116,698	+		GFF4847	0.72	-0.1
116,698	+		GFF4847	0.72	+0.1
116,699	-		GFF4847	0.72	+0.2
116,719	+		GFF4847	0.73	+0.8
116,720	-		GFF4847	0.73	+1.0
116,720	-		GFF4847	0.73	+0.4
116,720	-		GFF4847	0.73	+1.4
116,737	+		GFF4847	0.75	+0.4
116,737	+		GFF4847	0.75	+0.3
116,762	+		GFF4847	0.76	-0.3
116,777	-		GFF4847	0.78	-0.3
116,777	-		GFF4847	0.78	+0.8
116,777	-		GFF4847	0.78	+0.6
116,777	-		GFF4847	0.78	+1.0
116,899	-		GFF4847	0.87	+0.5
116,947	+				-0.8
116,947	+				+1.0
117,043	+				+0.3
117,043	+				+1.4
117,044	-				+0.7
117,044	-				+0.4
117,065	+				+0.1
117,107	+				+0.2
117,107	+				+1.1
117,107	+				+0.1
117,107	+				-0.2
117,108	-				-0.6
117,108	-				+0.2
117,108	-				+0.8
117,108	-				+0.4
117,108	-				-1.3
117,108	-				-0.0
117,108	-				+0.5
117,108	-				-0.8
117,109	+				+1.9
117,109	+				-0.4
117,109	+				+0.0
117,109	+				+1.4
117,109	+				+0.7
117,109	+				+1.2
117,109	+				+0.5
117,109	+				+0.1
117,109	+				+0.2
117,109	+				+1.0
117,109	+				-0.1
117,109	+				+0.6
117,109	+				+0.3
117,109	+				+0.2
117,110	-				-0.2
117,110	-				-1.4
117,110	-				-1.6
117,110	-				+0.1
117,110	-				+0.2
117,110	-				-0.1
117,110	-				+0.4
117,111	+				+0.3
117,111	+				-0.0
117,111	+				-0.4
117,111	+				+1.9
117,111	+				+0.3
117,111	+				-0.3
117,112	-				+0.3
117,112	-				+0.4
117,112	-				-0.8
117,112	-				+0.7
117,112	-				+0.1
117,112	-				-0.2
117,112	-				+0.2
117,112	-				-1.4
117,112	-				+0.1
117,112	-				-0.8
117,125	-				+0.7
117,221	+		GFF4848	0.16	+0.7
117,221	+		GFF4848	0.16	+0.5
117,221	+		GFF4848	0.16	+0.7
117,222	-		GFF4848	0.16	+0.1
117,222	-		GFF4848	0.16	+0.4
117,222	-		GFF4848	0.16	-0.4
117,275	+		GFF4848	0.23	-0.3
117,275	+		GFF4848	0.23	+0.3
117,275	+		GFF4848	0.23	+0.8
117,275	+		GFF4848	0.23	-0.0
117,275	+		GFF4848	0.23	+0.8
117,275	+		GFF4848	0.23	+0.8
117,275	+		GFF4848	0.23	+1.9
117,275	+		GFF4848	0.23	+0.6
117,276	-		GFF4848	0.23	-0.3
117,276	-		GFF4848	0.23	+0.4
117,276	-		GFF4848	0.23	-0.1
117,276	-		GFF4848	0.23	-0.6
117,276	-		GFF4848	0.23	+0.6
117,542	+		GFF4848	0.60	+0.4
117,542	+		GFF4848	0.60	-0.9
117,542	+		GFF4848	0.60	+0.7
117,542	+		GFF4848	0.60	+0.6
117,542	+		GFF4848	0.60	+0.9
117,543	-		GFF4848	0.60	+0.5
117,543	-		GFF4848	0.60	+0.3
117,543	-		GFF4848	0.60	+0.8
117,579	+		GFF4848	0.65	-0.2
117,579	+		GFF4848	0.65	+0.1
117,580	-		GFF4848	0.65	+0.1
117,580	-		GFF4848	0.65	-0.7
117,756	+		GFF4848	0.89	+0.2
117,757	-		GFF4848	0.89	+0.4
117,757	-		GFF4848	0.89	+0.2
117,757	-		GFF4848	0.89	+0.5
117,848	+				+0.4
117,851	+				+1.6
117,851	+				+0.2
117,852	-				+0.3
117,868	+				+0.8
117,868	+				+0.1
117,868	+				+0.3
117,869	-				+1.1
117,980	+		GFF4849	0.29	+1.2
117,981	-		GFF4849	0.30	+1.4
117,981	-		GFF4849	0.30	+0.3
117,986	+		GFF4849	0.31	+1.0
117,986	+		GFF4849	0.31	+1.6
117,986	+		GFF4849	0.31	+0.5
117,987	-		GFF4849	0.31	+1.2
117,987	-		GFF4849	0.31	+0.2
117,987	-		GFF4849	0.31	+1.5
118,170	-		GFF4849	0.72	-1.3
118,298	+				+1.5
118,299	-				+0.2
118,385	+		GFF4850	0.21	-0.2
118,451	+		GFF4850	0.37	+0.1
118,451	+		GFF4850	0.37	+1.3
118,451	+		GFF4850	0.37	+0.2
118,451	+		GFF4850	0.37	-0.1
118,452	-		GFF4850	0.38	+1.4
118,595	+		GFF4850	0.73	+0.2
118,595	+		GFF4850	0.73	+0.7
118,595	+		GFF4850	0.73	-0.2
118,596	-		GFF4850	0.73	+0.9
118,596	-		GFF4850	0.73	+0.6
118,596	-		GFF4850	0.73	-1.1
118,596	-		GFF4850	0.73	+0.5