Strain Fitness in Pseudomonas sp. DMC3 around GFF4832

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4830 and GFF4831 overlap by 1 nucleotidesGFF4831 and GFF4832 are separated by 142 nucleotidesGFF4832 and GFF4833 are separated by 81 nucleotides GFF4830 - NAD(P)H dehydrogenase (quinone), at 95,198 to 95,794 GFF4830 GFF4831 - hypothetical protein, at 95,794 to 96,219 GFF4831 GFF4832 - hypothetical protein, at 96,362 to 97,036 GFF4832 GFF4833 - tRNA-cytidine(32) 2-sulfurtransferase, at 97,118 to 97,942 GFF4833 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1at 95.378 kb on + strand, within GFF4830at 95.378 kb on + strand, within GFF4830at 95.378 kb on + strand, within GFF4830at 95.379 kb on - strand, within GFF4830at 95.379 kb on - strand, within GFF4830at 95.466 kb on - strand, within GFF4830at 95.466 kb on - strand, within GFF4830at 95.466 kb on - strand, within GFF4830at 95.631 kb on - strand, within GFF4830at 95.631 kb on - strand, within GFF4830at 95.631 kb on - strand, within GFF4830at 95.675 kb on + strand, within GFF4830at 95.826 kb on - strandat 95.826 kb on - strandat 95.909 kb on - strand, within GFF4831at 95.911 kb on + strand, within GFF4831at 95.912 kb on - strand, within GFF4831at 95.912 kb on - strand, within GFF4831at 95.912 kb on - strand, within GFF4831at 96.053 kb on - strand, within GFF4831at 96.080 kb on - strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.238 kb on + strandat 96.363 kb on + strandat 96.363 kb on + strandat 96.364 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.378 kb on + strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.509 kb on - strand, within GFF4832at 96.528 kb on + strand, within GFF4832at 96.615 kb on + strand, within GFF4832at 96.901 kb on + strand, within GFF4832at 96.913 kb on - strand, within GFF4832at 97.008 kb on + strandat 97.008 kb on + strandat 97.026 kb on + strandat 97.026 kb on + strandat 97.027 kb on - strandat 97.027 kb on - strandat 97.106 kb on + strandat 97.106 kb on + strandat 97.106 kb on + strandat 97.107 kb on - strandat 97.107 kb on - strandat 97.119 kb on + strandat 97.119 kb on + strandat 97.368 kb on + strand, within GFF4833at 97.395 kb on + strand, within GFF4833at 97.396 kb on - strand, within GFF4833at 97.563 kb on + strand, within GFF4833at 97.563 kb on + strand, within GFF4833at 97.563 kb on + strand, within GFF4833at 97.564 kb on - strand, within GFF4833at 97.564 kb on - strand, within GFF4833at 97.564 kb on - strand, within GFF4833at 97.641 kb on + strand, within GFF4833at 97.641 kb on + strand, within GFF4833at 97.665 kb on + strand, within GFF4833at 97.665 kb on + strand, within GFF4833at 97.690 kb on - strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.930 kb on + strandat 97.931 kb on - strandat 97.999 kb on - strandat 98.027 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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95,378 + GFF4830 0.30 +0.6
95,378 + GFF4830 0.30 -0.1
95,378 + GFF4830 0.30 -0.6
95,379 - GFF4830 0.30 -0.3
95,379 - GFF4830 0.30 +0.5
95,466 - GFF4830 0.45 +0.1
95,466 - GFF4830 0.45 -0.3
95,466 - GFF4830 0.45 +1.0
95,631 - GFF4830 0.73 -0.4
95,631 - GFF4830 0.73 -1.9
95,631 - GFF4830 0.73 -0.9
95,675 + GFF4830 0.80 +0.5
95,826 - -0.6
95,826 - +0.5
95,909 - GFF4831 0.27 -0.4
95,911 + GFF4831 0.27 -0.2
95,912 - GFF4831 0.28 +0.1
95,912 - GFF4831 0.28 -0.2
95,912 - GFF4831 0.28 +0.3
96,053 - GFF4831 0.61 -0.4
96,080 - GFF4831 0.67 +0.5
96,154 + GFF4831 0.85 +0.0
96,154 + GFF4831 0.85 +0.4
96,154 + GFF4831 0.85 -0.0
96,154 + GFF4831 0.85 +1.2
96,154 + GFF4831 0.85 +0.4
96,154 + GFF4831 0.85 -1.2
96,154 + GFF4831 0.85 +0.9
96,155 - GFF4831 0.85 -0.0
96,155 - GFF4831 0.85 +0.2
96,155 - GFF4831 0.85 -0.9
96,155 - GFF4831 0.85 -0.7
96,155 - GFF4831 0.85 +0.7
96,155 - GFF4831 0.85 +0.2
96,155 - GFF4831 0.85 -0.6
96,155 - GFF4831 0.85 -1.2
96,155 - GFF4831 0.85 +1.3
96,155 - GFF4831 0.85 -0.7
96,155 - GFF4831 0.85 +0.5
96,155 - GFF4831 0.85 -0.9
96,155 - GFF4831 0.85 -0.1
96,238 + -1.6
96,363 + -0.7
96,363 + -1.4
96,364 - -0.4
96,377 - +1.4
96,377 - -0.7
96,377 - +0.9
96,378 + +0.1
96,379 - -0.5
96,379 - +0.6
96,379 - -0.9
96,379 - -1.2
96,509 - GFF4832 0.22 +1.0
96,528 + GFF4832 0.25 -0.9
96,615 + GFF4832 0.37 +0.2
96,901 + GFF4832 0.80 +0.3
96,913 - GFF4832 0.82 +0.2
97,008 + +0.2
97,008 + +0.5
97,026 + -0.4
97,026 + -1.0
97,027 - +0.9
97,027 - -1.3
97,106 + -1.8
97,106 + +0.3
97,106 + +0.5
97,107 - +0.5
97,107 - -0.2
97,119 + -0.3
97,119 + -2.1
97,368 + GFF4833 0.30 -0.5
97,395 + GFF4833 0.34 -0.7
97,396 - GFF4833 0.34 -0.5
97,563 + GFF4833 0.54 -0.0
97,563 + GFF4833 0.54 -0.2
97,563 + GFF4833 0.54 -0.1
97,564 - GFF4833 0.54 -1.2
97,564 - GFF4833 0.54 +0.4
97,564 - GFF4833 0.54 +0.7
97,641 + GFF4833 0.63 -0.5
97,641 + GFF4833 0.63 +1.3
97,665 + GFF4833 0.66 -0.0
97,665 + GFF4833 0.66 -1.2
97,690 - GFF4833 0.69 -0.2
97,806 + GFF4833 0.83 -0.4
97,806 + GFF4833 0.83 +1.0
97,806 + GFF4833 0.83 -0.2
97,806 + GFF4833 0.83 -0.3
97,807 - GFF4833 0.84 -0.6
97,807 - GFF4833 0.84 -0.1
97,807 - GFF4833 0.84 -1.6
97,807 - GFF4833 0.84 -0.7
97,807 - GFF4833 0.84 -2.3
97,807 - GFF4833 0.84 +0.1
97,807 - GFF4833 0.84 +0.1
97,930 + -1.3
97,931 - -0.6
97,999 - -1.7
98,027 + +1.2

Or see this region's nucleotide sequence