Strain Fitness in Pseudomonas sp. DMC3 around GFF477

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF476 and GFF477 are separated by 93 nucleotidesGFF477 and GFF478 are separated by 16 nucleotides GFF476 - Phosphate import ATP-binding protein PstB, at 523,134 to 523,967 GFF476 GFF477 - hypothetical protein, at 524,061 to 525,731 GFF477 GFF478 - hypothetical protein, at 525,748 to 528,033 GFF478 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1 2at 523.064 kb on + strandat 523.065 kb on - strandat 523.065 kb on - strandat 523.065 kb on - strandat 523.065 kb on - strandat 523.065 kb on - strandat 523.070 kb on + strandat 523.070 kb on + strandat 523.070 kb on + strandat 523.070 kb on + strandat 523.071 kb on - strandat 523.071 kb on - strandat 523.071 kb on - strandat 523.071 kb on - strandat 523.071 kb on - strandat 523.108 kb on + strandat 523.109 kb on - strandat 523.109 kb on - strandat 523.156 kb on + strandat 523.157 kb on - strandat 523.231 kb on + strand, within GFF476at 523.231 kb on + strand, within GFF476at 523.231 kb on + strand, within GFF476at 523.231 kb on + strand, within GFF476at 523.231 kb on + strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.232 kb on - strand, within GFF476at 523.419 kb on + strand, within GFF476at 523.585 kb on + strand, within GFF476at 523.586 kb on - strand, within GFF476at 523.669 kb on + strand, within GFF476at 523.669 kb on + strand, within GFF476at 523.669 kb on + strand, within GFF476at 523.670 kb on - strand, within GFF476at 523.746 kb on - strand, within GFF476at 523.764 kb on - strand, within GFF476at 523.850 kb on - strand, within GFF476at 524.035 kb on + strandat 524.035 kb on + strandat 524.035 kb on + strandat 524.035 kb on + strandat 524.036 kb on - strandat 524.036 kb on - strandat 524.036 kb on - strandat 524.062 kb on + strandat 524.062 kb on + strandat 524.062 kb on + strandat 524.063 kb on - strandat 524.063 kb on - strandat 524.063 kb on - strandat 524.063 kb on - strandat 524.080 kb on + strandat 524.081 kb on - strandat 524.105 kb on + strandat 524.105 kb on + strandat 524.107 kb on + strandat 524.107 kb on + strandat 524.107 kb on + strandat 524.107 kb on + strandat 524.107 kb on + strandat 524.108 kb on - strandat 524.108 kb on - strandat 524.108 kb on - strandat 524.108 kb on - strandat 524.108 kb on - strandat 524.165 kb on - strandat 524.165 kb on - strandat 524.215 kb on + strandat 524.215 kb on + strandat 524.216 kb on - strandat 524.216 kb on - strandat 524.216 kb on - strandat 524.260 kb on + strand, within GFF477at 524.260 kb on + strand, within GFF477at 524.261 kb on - strand, within GFF477at 524.266 kb on + strand, within GFF477at 524.266 kb on + strand, within GFF477at 524.266 kb on + strand, within GFF477at 524.620 kb on + strand, within GFF477at 524.738 kb on - strand, within GFF477at 524.765 kb on + strand, within GFF477at 524.884 kb on + strand, within GFF477at 524.885 kb on - strand, within GFF477at 525.302 kb on - strand, within GFF477at 525.307 kb on + strand, within GFF477at 525.307 kb on + strand, within GFF477at 525.308 kb on - strand, within GFF477at 525.308 kb on - strand, within GFF477at 525.308 kb on - strand, within GFF477at 525.739 kb on + strandat 525.740 kb on - strandat 525.740 kb on - strandat 525.749 kb on + strandat 525.761 kb on + strandat 525.858 kb on - strandat 526.151 kb on + strand, within GFF478at 526.151 kb on + strand, within GFF478at 526.152 kb on - strand, within GFF478at 526.214 kb on + strand, within GFF478at 526.214 kb on + strand, within GFF478at 526.215 kb on - strand, within GFF478at 526.215 kb on - strand, within GFF478at 526.215 kb on - strand, within GFF478at 526.292 kb on + strand, within GFF478at 526.293 kb on - strand, within GFF478at 526.293 kb on - strand, within GFF478at 526.293 kb on - strand, within GFF478at 526.465 kb on + strand, within GFF478at 526.465 kb on + strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.470 kb on - strand, within GFF478at 526.577 kb on + strand, within GFF478at 526.577 kb on + strand, within GFF478at 526.578 kb on - strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.725 kb on + strand, within GFF478at 526.726 kb on - strand, within GFF478

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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523,064 + +0.1
523,065 - +0.3
523,065 - -1.6
523,065 - -1.4
523,065 - +0.6
523,065 - +0.4
523,070 + +0.3
523,070 + -1.2
523,070 + +0.4
523,070 + -0.6
523,071 - +0.4
523,071 - +0.8
523,071 - -0.2
523,071 - +0.2
523,071 - +0.9
523,108 + +1.6
523,109 - -0.0
523,109 - +2.6
523,156 + -0.4
523,157 - +0.6
523,231 + GFF476 0.12 -1.2
523,231 + GFF476 0.12 +0.0
523,231 + GFF476 0.12 -0.2
523,231 + GFF476 0.12 +0.2
523,231 + GFF476 0.12 +0.3
523,232 - GFF476 0.12 -0.2
523,232 - GFF476 0.12 +0.8
523,232 - GFF476 0.12 -0.7
523,232 - GFF476 0.12 -1.9
523,232 - GFF476 0.12 -2.4
523,232 - GFF476 0.12 -0.4
523,232 - GFF476 0.12 -0.3
523,232 - GFF476 0.12 +0.8
523,232 - GFF476 0.12 +0.6
523,232 - GFF476 0.12 -0.7
523,232 - GFF476 0.12 +1.3
523,419 + GFF476 0.34 -0.6
523,585 + GFF476 0.54 +1.3
523,586 - GFF476 0.54 +1.6
523,669 + GFF476 0.64 -0.4
523,669 + GFF476 0.64 -1.6
523,669 + GFF476 0.64 +0.6
523,670 - GFF476 0.64 +0.4
523,746 - GFF476 0.73 +1.9
523,764 - GFF476 0.76 +1.3
523,850 - GFF476 0.86 +1.2
524,035 + -0.5
524,035 + +0.4
524,035 + -0.4
524,035 + +0.9
524,036 - +0.4
524,036 - -0.5
524,036 - -1.4
524,062 + -0.5
524,062 + +0.4
524,062 + +0.2
524,063 - -0.2
524,063 - -2.1
524,063 - +0.8
524,063 - -0.8
524,080 + +1.0
524,081 - -1.2
524,105 + -0.8
524,105 + -1.0
524,107 + -0.7
524,107 + +1.4
524,107 + +0.4
524,107 + +0.6
524,107 + +0.0
524,108 - -0.7
524,108 - -0.7
524,108 - -0.1
524,108 - +0.2
524,108 - +0.7
524,165 - +0.8
524,165 - -1.2
524,215 + -0.3
524,215 + +0.6
524,216 - -0.1
524,216 - -1.2
524,216 - -0.4
524,260 + GFF477 0.12 +0.8
524,260 + GFF477 0.12 +1.2
524,261 - GFF477 0.12 -0.1
524,266 + GFF477 0.12 +0.8
524,266 + GFF477 0.12 +0.9
524,266 + GFF477 0.12 +0.7
524,620 + GFF477 0.33 -0.2
524,738 - GFF477 0.41 +0.5
524,765 + GFF477 0.42 +1.6
524,884 + GFF477 0.49 +0.6
524,885 - GFF477 0.49 +1.2
525,302 - GFF477 0.74 -0.8
525,307 + GFF477 0.75 -0.4
525,307 + GFF477 0.75 +0.4
525,308 - GFF477 0.75 -0.0
525,308 - GFF477 0.75 +0.0
525,308 - GFF477 0.75 +0.3
525,739 + +1.2
525,740 - -0.6
525,740 - -0.4
525,749 + +2.0
525,761 + -0.4
525,858 - -0.5
526,151 + GFF478 0.18 -0.7
526,151 + GFF478 0.18 +0.6
526,152 - GFF478 0.18 -0.2
526,214 + GFF478 0.20 +0.0
526,214 + GFF478 0.20 +0.6
526,215 - GFF478 0.20 +1.3
526,215 - GFF478 0.20 -0.8
526,215 - GFF478 0.20 +0.1
526,292 + GFF478 0.24 -0.2
526,293 - GFF478 0.24 -0.3
526,293 - GFF478 0.24 +1.3
526,293 - GFF478 0.24 -0.1
526,465 + GFF478 0.31 -1.4
526,465 + GFF478 0.31 -1.2
526,466 - GFF478 0.31 -0.7
526,466 - GFF478 0.31 +0.2
526,466 - GFF478 0.31 -1.0
526,466 - GFF478 0.31 -0.1
526,466 - GFF478 0.31 -1.9
526,466 - GFF478 0.31 +0.3
526,466 - GFF478 0.31 +0.0
526,470 - GFF478 0.32 -1.3
526,577 + GFF478 0.36 -0.3
526,577 + GFF478 0.36 +0.3
526,578 - GFF478 0.36 +0.1
526,721 + GFF478 0.43 -0.2
526,721 + GFF478 0.43 -0.7
526,721 + GFF478 0.43 -0.3
526,721 + GFF478 0.43 +0.2
526,722 - GFF478 0.43 -0.7
526,722 - GFF478 0.43 +1.6
526,722 - GFF478 0.43 +0.9
526,722 - GFF478 0.43 +0.1
526,722 - GFF478 0.43 -0.1
526,722 - GFF478 0.43 +0.8
526,722 - GFF478 0.43 -1.2
526,725 + GFF478 0.43 +0.6
526,726 - GFF478 0.43 -0.5

Or see this region's nucleotide sequence