Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4730 and GFF4731 are separated by 228 nucleotides GFF4731 and GFF4732 are separated by 108 nucleotides GFF4732 and GFF4733 are separated by 44 nucleotides GFF4733 and GFF4734 are separated by 61 nucleotides GFF4734 and GFF4735 are separated by 114 nucleotides
GFF4730 - hypothetical protein, at 231,503 to 231,982
GFF4730
GFF4731 - putative protein YedJ, at 232,211 to 232,864
GFF4731
GFF4732 - hypothetical protein, at 232,973 to 233,317
GFF4732
GFF4733 - hypothetical protein, at 233,362 to 233,619
GFF4733
GFF4734 - hypothetical protein, at 233,681 to 234,061
GFF4734
GFF4735 - Ribokinase, at 234,176 to 235,105
GFF4735
Position (kb) 232
233
234 Strain fitness (log2 ratio) -1
0
1
2 at 232.004 kb on + strand at 232.005 kb on - strand at 232.014 kb on + strand at 232.014 kb on + strand at 232.014 kb on + strand at 232.015 kb on - strand at 232.015 kb on - strand at 232.015 kb on - strand at 232.015 kb on - strand at 232.017 kb on + strand at 232.018 kb on - strand at 232.018 kb on - strand at 232.210 kb on + strand at 232.210 kb on + strand at 232.210 kb on + strand at 232.211 kb on - strand at 232.211 kb on - strand at 232.219 kb on + strand at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.640 kb on + strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.641 kb on - strand, within GFF4731 at 232.706 kb on + strand, within GFF4731 at 232.706 kb on + strand, within GFF4731 at 232.707 kb on - strand, within GFF4731 at 232.707 kb on - strand, within GFF4731 at 232.752 kb on + strand, within GFF4731 at 232.752 kb on + strand, within GFF4731 at 232.752 kb on + strand, within GFF4731 at 232.752 kb on + strand, within GFF4731 at 232.753 kb on - strand, within GFF4731 at 232.753 kb on - strand, within GFF4731 at 232.753 kb on - strand, within GFF4731 at 232.945 kb on + strand at 232.945 kb on + strand at 232.945 kb on + strand at 232.945 kb on + strand at 232.945 kb on + strand at 232.972 kb on + strand at 232.972 kb on + strand at 232.998 kb on + strand at 232.999 kb on - strand at 232.999 kb on - strand at 233.096 kb on - strand, within GFF4732 at 233.096 kb on - strand, within GFF4732 at 233.096 kb on - strand, within GFF4732 at 233.316 kb on - strand at 233.316 kb on - strand at 233.316 kb on - strand at 233.316 kb on - strand at 233.337 kb on + strand at 233.357 kb on + strand at 233.357 kb on + strand at 233.357 kb on + strand at 233.358 kb on - strand at 233.610 kb on + strand at 233.705 kb on + strand at 233.705 kb on + strand at 233.706 kb on - strand at 233.706 kb on - strand at 233.751 kb on - strand, within GFF4734 at 233.998 kb on + strand, within GFF4734 at 234.120 kb on - strand at 234.128 kb on + strand at 234.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 232,004 + -0.8 232,005 - -0.3 232,014 + -0.1 232,014 + -0.1 232,014 + -0.4 232,015 - -0.6 232,015 - +0.2 232,015 - -1.1 232,015 - -1.0 232,017 + +0.7 232,018 - -0.8 232,018 - -0.1 232,210 + +0.2 232,210 + +0.2 232,210 + +0.8 232,211 - -0.1 232,211 - -0.7 232,219 + +0.3 232,640 + GFF4731 0.66 -0.1 232,640 + GFF4731 0.66 -0.4 232,640 + GFF4731 0.66 -0.0 232,640 + GFF4731 0.66 +0.1 232,640 + GFF4731 0.66 +0.2 232,640 + GFF4731 0.66 -1.0 232,640 + GFF4731 0.66 -0.7 232,640 + GFF4731 0.66 -0.0 232,640 + GFF4731 0.66 +0.7 232,641 - GFF4731 0.66 +0.9 232,641 - GFF4731 0.66 -0.8 232,641 - GFF4731 0.66 -0.6 232,641 - GFF4731 0.66 +0.2 232,641 - GFF4731 0.66 -1.1 232,641 - GFF4731 0.66 +0.7 232,641 - GFF4731 0.66 -0.1 232,706 + GFF4731 0.76 +0.0 232,706 + GFF4731 0.76 +1.1 232,707 - GFF4731 0.76 -0.1 232,707 - GFF4731 0.76 -0.2 232,752 + GFF4731 0.83 +0.0 232,752 + GFF4731 0.83 +0.1 232,752 + GFF4731 0.83 -0.2 232,752 + GFF4731 0.83 -0.3 232,753 - GFF4731 0.83 -1.4 232,753 - GFF4731 0.83 +2.0 232,753 - GFF4731 0.83 -1.4 232,945 + +0.0 232,945 + -0.6 232,945 + -0.7 232,945 + -1.0 232,945 + -0.6 232,972 + -0.3 232,972 + -0.6 232,998 + +0.3 232,999 - -0.4 232,999 - +0.1 233,096 - GFF4732 0.36 +2.1 233,096 - GFF4732 0.36 -0.3 233,096 - GFF4732 0.36 +0.2 233,316 - +0.4 233,316 - -0.6 233,316 - +0.6 233,316 - -0.9 233,337 + +0.3 233,357 + -0.1 233,357 + -0.7 233,357 + +0.0 233,358 - -0.7 233,610 + +0.8 233,705 + -0.0 233,705 + -1.6 233,706 - -0.2 233,706 - +0.4 233,751 - GFF4734 0.18 +1.7 233,998 + GFF4734 0.83 -0.1 234,120 - +0.9 234,128 + -0.3 234,200 - -1.1
Or see this region's nucleotide sequence