Strain Fitness in Pseudomonas sp. DMC3 around GFF4676

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4675 and GFF4676 are separated by 28 nucleotidesGFF4676 and GFF4677 are separated by 13 nucleotides GFF4675 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 165,506 to 167,713 GFF4675 GFF4676 - Histidinol-phosphate aminotransferase, at 167,742 to 168,854 GFF4676 GFF4677 - Bifunctional chorismate mutase/prephenate dehydratase, at 168,868 to 169,962 GFF4677 Position (kb) 167 168 169Strain fitness (log2 ratio) -1 0 1at 166.840 kb on - strand, within GFF4675at 166.840 kb on - strand, within GFF4675at 168.023 kb on - strand, within GFF4676at 168.161 kb on - strand, within GFF4676at 168.257 kb on - strand, within GFF4676at 168.439 kb on - strand, within GFF4676at 168.439 kb on - strand, within GFF4676at 168.439 kb on - strand, within GFF4676at 168.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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166,840 - GFF4675 0.60 -0.7
166,840 - GFF4675 0.60 +0.4
168,023 - GFF4676 0.25 -0.9
168,161 - GFF4676 0.38 +1.2
168,257 - GFF4676 0.46 +0.5
168,439 - GFF4676 0.63 +1.7
168,439 - GFF4676 0.63 -0.6
168,439 - GFF4676 0.63 +0.1
168,870 - +0.3

Or see this region's nucleotide sequence